Wall clock time and date at job start Sat Apr 11 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47066 * 2 1 4 4 C 1.50701 * 109.46817 * 239.99857 * 2 1 3 5 5 H 1.08002 * 119.99980 * 239.99730 * 4 2 1 6 6 C 1.37875 * 120.00226 * 60.00162 * 4 2 1 7 7 N 1.31511 * 120.00142 * 179.71980 * 6 4 2 8 8 Si 1.86809 * 119.99866 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47073 * 269.72375 * 8 6 4 10 10 H 1.48497 * 109.46900 * 29.72456 * 8 6 4 11 11 H 1.48495 * 109.47090 * 149.72320 * 8 6 4 12 12 N 1.46505 * 109.46774 * 120.00041 * 2 1 3 13 13 C 1.34777 * 119.99632 * 274.99872 * 12 2 1 14 14 O 1.21355 * 120.00421 * 359.97438 * 13 12 2 15 15 C 1.49353 * 119.99691 * 180.02562 * 13 12 2 16 16 O 1.21375 * 119.99630 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00073 * 179.97438 * 15 13 12 18 18 C 1.39743 * 120.00112 * 175.37528 * 17 15 13 19 19 C 1.38932 * 120.07119 * 214.82560 * 18 17 15 20 20 C 1.38079 * 119.93800 * 179.76583 * 19 18 17 21 21 C 1.38382 * 120.06528 * 0.48465 * 20 19 18 22 22 Br 1.89103 * 119.93226 * 179.74307 * 21 20 19 23 23 C 1.38370 * 120.12989 * 359.76700 * 21 20 19 24 24 C 1.38086 * 120.07173 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.47027 * 59.99952 * 1 2 3 26 26 H 1.08998 * 109.47796 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47434 * 300.00363 * 1 2 3 28 28 H 0.97003 * 120.00025 * 180.27324 * 7 6 4 29 29 H 0.96994 * 119.99406 * 94.99866 * 12 2 1 30 30 H 0.96997 * 119.99701 * 355.37485 * 17 15 13 31 31 H 1.08008 * 120.02596 * 359.97438 * 19 18 17 32 32 H 1.07997 * 119.97061 * 180.20469 * 20 19 18 33 33 H 1.08002 * 119.96255 * 179.97438 * 23 21 20 34 34 H 1.08001 * 120.03905 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 2.1421 -0.8562 -3.5565 8 14 0.6247 1.2790 -2.6542 9 1 -0.8025 0.8721 -2.7065 10 1 0.8421 2.1733 -1.4888 11 1 0.9804 1.9987 -3.9034 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1594 2.4116 15 6 2.6453 -0.7222 3.5765 16 8 2.9339 -1.8998 3.5220 17 7 2.7745 -0.0497 4.7374 18 6 3.1477 -0.7286 5.9003 19 6 2.6297 -0.3405 7.1297 20 6 2.9967 -1.0163 8.2765 21 6 3.8873 -2.0730 8.2035 22 35 4.3930 -2.9912 9.7774 23 6 4.4090 -2.4585 6.9813 24 6 4.0417 -1.7899 5.8302 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9110 -0.5225 -4.4375 29 1 2.2489 -1.6318 1.1526 30 1 2.6083 0.9055 4.7655 31 1 1.9380 0.4870 7.1877 32 1 2.5918 -0.7172 9.2319 33 1 5.1042 -3.2833 6.9275 34 1 4.4495 -2.0910 4.8766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123170895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:21 Heat of formation + Delta-G solvation = -52.070093 kcal Electronic energy + Delta-G solvation = -20419.019719 eV Core-core repulsion = 16976.748632 eV Total energy + Delta-G solvation = -3442.271087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.20025 -40.56284 -39.31851 -37.20793 -36.13514 -34.43500 -32.64455 -32.16862 -31.90016 -29.74031 -27.28775 -26.32900 -24.24098 -23.42178 -22.25186 -21.35389 -20.25322 -18.84809 -18.47310 -17.63647 -17.39525 -17.08367 -16.79761 -16.23561 -15.90423 -15.32562 -15.19148 -14.93023 -14.82591 -14.51517 -14.27301 -14.14739 -13.75470 -13.29129 -13.17382 -12.79534 -12.68618 -12.55596 -12.16984 -12.13658 -11.58439 -11.34223 -11.26805 -11.11130 -10.90368 -10.72194 -10.14268 -10.09767 -9.27242 -8.38711 -6.47335 -0.27724 0.24715 0.40571 0.61651 1.20878 1.30503 1.38054 1.47125 2.02486 2.26244 2.55623 2.59107 2.96911 3.34660 3.74423 3.86016 4.18549 4.25185 4.36634 4.38994 4.51078 4.62489 4.77342 4.91477 4.93126 5.09387 5.15585 5.17487 5.20319 5.32639 5.44378 5.69466 5.82657 6.07328 6.44332 6.53924 6.66668 6.91245 7.20251 8.76600 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.044277 B = 0.002058 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.226328 B =13601.932792 C =14037.080375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.240 3.760 3 H 0.041 0.959 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.943 3.057 9 H -0.258 1.258 10 H -0.252 1.252 11 H -0.293 1.293 12 N -0.667 5.667 13 C 0.502 3.498 14 O -0.548 6.548 15 C 0.519 3.481 16 O -0.515 6.515 17 N -0.633 5.633 18 C 0.143 3.857 19 C -0.126 4.126 20 C -0.068 4.068 21 C -0.112 4.112 22 Br -0.046 7.046 23 C -0.076 4.076 24 C -0.131 4.131 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.272 0.728 29 H 0.413 0.587 30 H 0.434 0.566 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 -0.225 29.534 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.172 4.172 7 N -0.572 5.572 8 Si 0.769 3.231 9 H -0.184 1.184 10 H -0.176 1.176 11 H -0.221 1.221 12 N -0.316 5.316 13 C 0.282 3.718 14 O -0.428 6.428 15 C 0.301 3.699 16 O -0.389 6.389 17 N -0.281 5.281 18 C 0.049 3.951 19 C -0.146 4.146 20 C -0.089 4.089 21 C -0.192 4.192 22 Br 0.039 6.961 23 C -0.096 4.096 24 C -0.152 4.152 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.249 0.751 30 H 0.275 0.725 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.163 0.837 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.136 -0.574 29.837 29.919 hybrid contribution -0.270 0.506 -1.248 1.374 sum 1.866 -0.068 28.589 28.649 Atomic orbital electron populations 1.22378 0.96941 1.02062 1.00271 1.19024 0.91810 0.93616 0.81888 0.94157 1.21203 1.32885 1.13867 0.89993 0.92921 1.25626 0.96832 0.99667 0.95079 1.69984 1.46379 1.42022 0.98782 0.85948 0.79570 0.79909 0.77678 1.18393 1.17600 1.22063 1.45977 1.62099 1.15004 1.08548 1.19995 0.80097 0.86941 0.84783 1.90719 1.51142 1.15801 1.85097 1.20199 0.78420 0.86625 0.84683 1.90764 1.47477 1.16105 1.84586 1.43051 1.65634 1.13606 1.05793 1.18081 0.95712 0.95263 0.86082 1.21225 1.01037 1.02710 0.89655 1.21215 0.95002 0.92872 0.99769 1.21971 1.04130 1.00681 0.92427 1.96727 1.91536 1.76097 1.31712 1.21133 0.98944 0.99443 0.90085 1.21337 0.97357 0.96928 0.99603 0.93408 0.91750 0.92553 0.91914 0.75118 0.72531 0.81716 0.81989 0.83659 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.44 8.96 71.98 0.64 -5.79 16 2 C 0.24 10.86 2.15 44.25 0.10 10.96 16 3 H 0.04 1.95 6.63 -2.39 -0.02 1.93 16 4 C -0.54 -29.01 9.31 25.60 0.24 -28.77 16 5 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 6 C 0.03 1.54 5.45 84.65 0.46 2.01 16 7 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 8 Si 0.94 42.56 24.37 68.60 1.67 44.23 16 9 H -0.26 -10.93 6.88 99.48 0.68 -10.24 16 10 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 N -0.67 -26.01 5.06 -447.52 -2.27 -28.27 16 13 C 0.50 17.52 7.85 87.24 0.68 18.20 16 14 O -0.55 -20.62 16.14 -3.26 -0.05 -20.67 16 15 C 0.52 15.23 7.73 87.24 0.67 15.90 16 16 O -0.51 -16.82 13.91 -3.32 -0.05 -16.87 16 17 N -0.63 -14.11 5.32 -304.82 -1.62 -15.73 16 18 C 0.14 2.93 6.30 38.21 0.24 3.17 16 19 C -0.13 -1.85 9.97 22.40 0.22 -1.62 16 20 C -0.07 -0.95 9.78 22.27 0.22 -0.73 16 21 C -0.11 -1.88 6.23 22.34 0.14 -1.74 16 22 Br -0.05 -0.69 33.70 -20.37 -0.69 -1.38 16 23 C -0.08 -1.44 9.78 22.27 0.22 -1.22 16 24 C -0.13 -2.95 8.69 22.40 0.19 -2.75 16 25 H 0.05 1.97 3.28 -2.39 -0.01 1.97 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.41 15.53 8.01 -92.71 -0.74 14.79 16 30 H 0.43 7.95 8.30 -92.71 -0.77 7.18 16 31 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.13 3.43 6.22 -2.91 -0.02 3.42 16 Total: -1.00 -63.58 314.33 0.91 -62.67 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.42 Total: 23.38 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.03 Total: 7.61 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -3.59 Total: -98.98 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.69 Total: -1.38 kcal Total: -63.58 0.91 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123170895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.601 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds