Wall clock time and date at job start Sat Apr 11 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47389 * 2 1 4 4 C 1.50699 * 109.46971 * 120.00088 * 2 1 3 5 5 H 1.08003 * 119.99978 * 119.99830 * 4 2 1 6 6 C 1.37874 * 120.00235 * 299.99611 * 4 2 1 7 7 N 1.31517 * 119.99706 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00331 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46897 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47336 * 119.99923 * 8 6 4 11 11 H 1.48507 * 109.47123 * 240.00262 * 8 6 4 12 12 N 1.46498 * 109.47017 * 239.99845 * 2 1 3 13 13 C 1.34779 * 119.99863 * 85.00553 * 12 2 1 14 14 O 1.21351 * 120.00288 * 359.97438 * 13 12 2 15 15 C 1.49354 * 119.99912 * 180.27811 * 13 12 2 16 16 O 1.21381 * 120.00192 * 359.71842 * 15 13 12 17 17 N 1.34773 * 119.99960 * 179.72508 * 15 13 12 18 18 C 1.39730 * 120.00002 * 175.37987 * 17 15 13 19 19 C 1.38957 * 120.06892 * 214.82172 * 18 17 15 20 20 C 1.38087 * 119.93907 * 179.69917 * 19 18 17 21 21 C 1.38292 * 120.08858 * 0.57349 * 20 19 18 22 22 C 1.38366 * 120.13890 * 359.72442 * 21 20 19 23 23 Br 1.89109 * 119.96945 * 179.97438 * 22 21 20 24 24 C 1.38202 * 120.05860 * 359.97438 * 22 21 20 25 25 H 1.09004 * 109.47042 * 59.99529 * 1 2 3 26 26 H 1.09000 * 109.47389 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47412 * 300.00443 * 1 2 3 28 28 H 0.96999 * 119.99710 * 179.97438 * 7 6 4 29 29 H 0.97007 * 120.00144 * 265.00120 * 12 2 1 30 30 H 0.96997 * 120.00028 * 355.37329 * 17 15 13 31 31 H 1.08000 * 120.02949 * 0.02562 * 19 18 17 32 32 H 1.08001 * 119.95130 * 180.27601 * 20 19 18 33 33 H 1.07998 * 119.93084 * 179.74117 * 21 20 19 34 34 H 1.07998 * 120.04215 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1483 -2.2857 3.6037 10 1 3.1472 -0.1859 4.8160 11 1 1.1676 -1.5866 4.8165 12 7 2.0182 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8581 1.1591 -2.4117 15 6 2.6389 -0.7238 -3.5781 16 8 2.9276 -1.9016 -3.5236 17 7 2.7625 -0.0528 -4.7404 18 6 3.3131 -0.6861 -5.8576 19 6 4.0929 0.0355 -6.7531 20 6 4.6408 -0.5944 -7.8530 21 6 4.4047 -1.9396 -8.0706 22 6 3.6237 -2.6601 -7.1845 23 35 3.3033 -4.4991 -7.4871 24 6 3.0775 -2.0370 -6.0784 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7082 1.1608 3.4844 29 1 2.2489 -1.6319 -1.1526 30 1 2.4691 0.8697 -4.8013 31 1 4.2746 1.0870 -6.5862 32 1 5.2506 -0.0347 -8.5468 33 1 4.8311 -2.4287 -8.9339 34 1 2.4682 -2.5997 -5.3867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123171090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:24 Heat of formation + Delta-G solvation = -58.762884 kcal Electronic energy + Delta-G solvation = -20475.517105 eV Core-core repulsion = 17032.955797 eV Total energy + Delta-G solvation = -3442.561308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16800 -40.49722 -39.26659 -37.09492 -36.08423 -34.36358 -33.19996 -31.36414 -30.93394 -30.12931 -27.39884 -26.42060 -24.03732 -23.30606 -22.32724 -21.28924 -20.16005 -18.69977 -18.18205 -17.71476 -17.16335 -17.10144 -16.87451 -16.19248 -15.77874 -15.33842 -15.04790 -14.87005 -14.50320 -14.44599 -14.26478 -13.77293 -13.20839 -13.05383 -12.92831 -12.80290 -12.56533 -12.53791 -12.31826 -12.14598 -12.05761 -11.34774 -11.28897 -11.16474 -10.72830 -10.62632 -10.01386 -9.84244 -9.37054 -8.21896 -6.39089 -0.17475 0.11252 0.49722 0.58540 1.26014 1.43829 1.46264 1.57847 2.07132 2.37783 2.59034 2.68576 3.09193 3.42593 3.83419 4.02577 4.09610 4.27286 4.35679 4.65446 4.68300 4.86896 4.99868 5.04253 5.11932 5.18764 5.28148 5.29421 5.41524 5.57960 5.72459 5.77179 5.93431 6.02031 6.47915 6.62787 6.72968 7.03107 7.33252 8.84460 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.002540 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.803315 B =11022.580344 C =11915.985045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.670 5.670 13 C 0.497 3.503 14 O -0.555 6.555 15 C 0.517 3.483 16 O -0.517 6.517 17 N -0.633 5.633 18 C 0.128 3.872 19 C -0.118 4.118 20 C -0.084 4.084 21 C -0.102 4.102 22 C -0.087 4.087 23 Br -0.051 7.051 24 C -0.116 4.116 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.268 0.732 29 H 0.410 0.590 30 H 0.434 0.566 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -5.728 -24.779 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.434 6.434 15 C 0.299 3.701 16 O -0.392 6.392 17 N -0.281 5.281 18 C 0.033 3.967 19 C -0.138 4.138 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.167 4.167 23 Br 0.035 6.965 24 C -0.138 4.138 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.246 0.754 30 H 0.274 0.726 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.175 0.825 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.770 -6.291 -24.650 26.326 hybrid contribution -0.074 0.102 1.288 1.294 sum 6.696 -6.189 -23.362 25.078 Atomic orbital electron populations 1.21933 0.97401 0.99820 1.00397 1.18628 0.91718 0.92424 0.80617 0.96528 1.21525 1.33047 1.13767 0.90786 0.91225 1.25713 0.94723 0.95537 1.02041 1.70019 1.36553 1.23609 1.24810 0.85304 0.78169 0.78498 0.78429 1.18877 1.20620 1.20246 1.46281 1.61738 1.14815 1.09103 1.20063 0.80242 0.87023 0.85028 1.90713 1.51309 1.16204 1.85217 1.20281 0.78376 0.86746 0.84662 1.90750 1.47700 1.15602 1.85171 1.43026 1.59758 1.17718 1.07598 1.17896 0.97765 0.92462 0.88527 1.21473 0.95535 1.02035 0.94768 1.21422 0.98376 0.93596 0.96898 1.21498 0.96914 0.94906 0.98862 1.21761 1.04359 0.91651 0.98918 1.96717 1.95627 1.08145 1.96030 1.21186 1.00917 0.94689 0.97004 0.95985 0.94183 0.90745 0.92278 0.75439 0.72619 0.82083 0.80575 0.82513 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.27 13.58 2.56 44.24 0.11 13.70 16 3 H 0.02 0.97 7.58 -2.39 -0.02 0.95 16 4 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.67 11.32 21.45 0.24 -50.43 16 8 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.67 -28.59 5.06 -447.55 -2.27 -30.86 16 13 C 0.50 19.53 7.85 87.24 0.68 20.21 16 14 O -0.55 -24.00 16.14 -3.25 -0.05 -24.05 16 15 C 0.52 16.96 7.73 87.24 0.67 17.63 16 16 O -0.52 -18.47 13.91 -3.34 -0.05 -18.52 16 17 N -0.63 -16.06 5.32 -304.84 -1.62 -17.68 16 18 C 0.13 2.91 6.30 38.21 0.24 3.15 16 19 C -0.12 -1.79 9.97 22.41 0.22 -1.57 16 20 C -0.08 -0.98 10.04 22.25 0.22 -0.75 16 21 C -0.10 -1.50 9.78 22.31 0.22 -1.29 16 22 C -0.09 -1.83 6.22 22.29 0.14 -1.69 16 23 Br -0.05 -1.04 33.70 -20.37 -0.69 -1.72 16 24 C -0.12 -2.95 8.43 22.42 0.19 -2.76 16 25 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.41 16.27 8.01 -92.70 -0.74 15.53 16 30 H 0.43 9.35 8.30 -92.71 -0.77 8.58 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.13 3.81 6.22 -2.91 -0.02 3.79 16 Total: -1.00 -63.84 321.16 1.30 -62.54 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.34 Total: 23.78 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 4.04 Total: 13.22 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -3.64 Total: -98.96 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.10 Total: -42.57 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -0.69 Total: -1.72 kcal Total: -63.84 1.30 -62.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123171090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.781 kcal (2) G-P(sol) polarization free energy of solvation -63.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds