Wall clock time and date at job start Sat Apr 11 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 119.99343 * 2 1 4 4 H 1.48507 * 109.47003 * 239.99782 * 3 2 1 5 5 H 1.48497 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46973 * 120.00170 * 3 2 1 7 7 C 1.40046 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99769 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00244 * 0.02562 * 9 7 2 11 11 N 1.34783 * 119.99894 * 179.97438 * 9 7 2 12 12 C 1.46497 * 119.99964 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47061 * 180.02562 * 12 11 9 14 14 N 1.46497 * 109.47061 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99748 * 179.97438 * 14 13 12 16 16 O 1.21558 * 120.00487 * 0.02562 * 15 14 13 17 17 C 1.47804 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.39607 * 120.13442 * 0.31906 * 17 15 14 19 19 C 1.37904 * 119.86225 * 180.25469 * 18 17 15 20 20 C 1.38487 * 120.13363 * 359.44841 * 19 18 17 21 21 Br 1.89097 * 119.86130 * 180.27846 * 20 19 18 22 22 C 1.38476 * 120.27188 * 0.25944 * 20 19 18 23 23 C 1.37906 * 120.13374 * 0.02562 * 22 20 19 24 24 H 0.97003 * 120.00802 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99422 * 0.02562 * 11 9 7 26 26 H 1.08998 * 109.47115 * 60.00384 * 12 11 9 27 27 H 1.09001 * 109.46951 * 299.99943 * 12 11 9 28 28 H 1.08999 * 109.46819 * 59.99648 * 13 12 11 29 29 H 1.09007 * 109.46612 * 300.00224 * 13 12 11 30 30 H 0.96996 * 120.00029 * 359.97438 * 14 13 12 31 31 H 1.07998 * 120.06709 * 359.97438 * 18 17 15 32 32 H 1.08002 * 119.93538 * 179.73250 * 19 18 17 33 33 H 1.07992 * 119.92962 * 180.02562 * 22 20 19 34 34 H 1.08004 * 120.06628 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6179 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2126 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0016 12 6 1.2167 -4.9164 -0.0022 13 6 2.2111 -6.0793 -0.0027 14 7 1.4787 -7.3480 -0.0026 15 6 2.1526 -8.5151 -0.0036 16 8 3.3682 -8.5151 -0.0040 17 6 1.4137 -9.7952 -0.0029 18 6 0.0176 -9.7986 -0.0081 19 6 -0.6661 -10.9961 -0.0022 20 6 0.0292 -12.1938 -0.0026 21 35 -0.9162 -13.8314 -0.0025 22 6 1.4140 -12.1969 -0.0037 23 6 2.1090 -11.0058 -0.0037 24 1 -0.4851 0.8400 -0.0004 25 1 2.9192 -3.6475 -0.0020 26 1 0.5898 -4.9736 -0.8920 27 1 0.5904 -4.9747 0.8881 28 1 2.8377 -6.0218 0.8873 29 1 2.8378 -6.0210 -0.8927 30 1 0.5087 -7.3481 -0.0019 31 1 -0.5257 -8.8652 -0.0122 32 1 -1.7462 -11.0001 -0.0018 33 1 1.9506 -13.1341 -0.0044 34 1 3.1891 -11.0096 -0.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132649027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:34 Heat of formation + Delta-G solvation = -76.306433 kcal Electronic energy + Delta-G solvation = -19621.289261 eV Core-core repulsion = 16177.967207 eV Total energy + Delta-G solvation = -3443.322053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38761 -39.66563 -39.27790 -36.74147 -34.93443 -34.36125 -33.51418 -32.21995 -30.97556 -29.81196 -27.96016 -24.93339 -24.00019 -23.31502 -22.02715 -21.33860 -19.57710 -18.95825 -17.62074 -17.33231 -16.88356 -16.76436 -16.21620 -16.06810 -15.79913 -15.66418 -15.58433 -14.82452 -14.42954 -14.42031 -14.32551 -14.07089 -13.11037 -12.92063 -12.89775 -12.75341 -12.58791 -12.57973 -12.36894 -12.04943 -11.92572 -11.35507 -11.24732 -10.91642 -10.33337 -10.18920 -9.91504 -9.82826 -9.54203 -8.29975 -6.86010 -0.51650 0.18714 0.49031 1.41876 1.44782 1.56460 1.60650 1.85722 2.27090 2.46381 2.62963 3.20489 3.55841 3.60385 3.61840 3.79893 3.81310 4.09102 4.13838 4.21010 4.41692 4.47384 4.83993 4.85880 4.90946 4.97295 5.03356 5.14704 5.21151 5.32573 5.57272 5.86163 6.17279 6.23677 6.35652 6.86715 7.01132 7.49819 8.46511 8.65784 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.038862 B = 0.001669 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.330711 B =16772.731568 C =17472.613876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.539 3.461 10 O -0.629 6.629 11 N -0.755 5.755 12 C 0.129 3.871 13 C 0.127 3.873 14 N -0.709 5.709 15 C 0.557 3.443 16 O -0.572 6.572 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.098 4.098 20 C -0.074 4.074 21 Br -0.038 7.038 22 C -0.098 4.098 23 C -0.061 4.061 24 H 0.275 0.725 25 H 0.398 0.602 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.415 0.585 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -28.668 -0.014 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.410 5.410 12 C 0.003 3.997 13 C 0.003 3.997 14 N -0.361 5.361 15 C 0.346 3.654 16 O -0.453 6.453 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.117 4.117 20 C -0.154 4.154 21 Br 0.048 6.952 22 C -0.117 4.117 23 C -0.081 4.081 24 H 0.085 0.915 25 H 0.232 0.768 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.253 0.747 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.921 -29.195 -0.014 29.210 hybrid contribution 0.351 1.108 0.001 1.162 sum -0.569 -28.087 -0.013 28.093 Atomic orbital electron populations 1.70162 1.09454 1.29085 1.36276 1.26961 0.95551 1.04936 0.91221 0.85073 0.78201 0.74773 0.80269 1.17890 1.19948 1.17880 1.21410 0.94853 0.90026 1.54709 0.89325 1.18564 0.86839 0.84154 0.76101 1.90554 1.16049 1.87857 1.57204 1.45664 1.09527 1.04352 1.81493 1.20973 0.94376 0.83514 1.00789 1.21281 0.94117 0.81257 1.03071 1.45669 1.11346 1.04829 1.74300 1.18525 0.86886 0.84291 0.75724 1.90772 1.14943 1.88057 1.51527 1.20021 0.94544 0.92815 1.06140 1.21588 0.92184 0.99700 0.95993 1.21351 1.01783 0.90021 0.98570 1.22276 0.95222 0.92770 1.05162 1.96790 1.74852 1.26166 1.97412 1.21295 0.92101 0.99376 0.98956 1.21372 1.01301 0.90458 0.94984 0.91493 0.76846 0.93296 0.93306 0.90714 0.90703 0.74724 0.82496 0.82212 0.82467 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.42 11.83 21.83 0.26 -49.16 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 40.24 29.56 68.60 2.03 42.27 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.57 -31.86 9.54 24.83 0.24 -31.63 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.54 30.46 7.75 86.36 0.67 31.13 16 10 O -0.63 -41.01 15.02 -4.31 -0.06 -41.08 16 11 N -0.75 -32.33 5.55 -467.40 -2.59 -34.92 16 12 C 0.13 4.48 5.79 86.38 0.50 4.98 16 13 C 0.13 3.45 5.79 86.38 0.50 3.95 16 14 N -0.71 -16.01 5.51 -466.01 -2.57 -18.57 16 15 C 0.56 13.81 7.77 86.77 0.67 14.48 16 16 O -0.57 -18.35 16.35 -3.90 -0.06 -18.42 16 17 C -0.13 -2.51 5.87 -20.08 -0.12 -2.63 16 18 C -0.08 -1.06 9.54 22.52 0.21 -0.85 16 19 C -0.10 -1.24 9.77 22.25 0.22 -1.03 16 20 C -0.07 -1.03 6.23 22.39 0.14 -0.89 16 21 Br -0.04 -0.48 33.69 -20.37 -0.69 -1.17 16 22 C -0.10 -1.36 9.77 22.25 0.22 -1.15 16 23 C -0.06 -1.07 9.59 22.52 0.22 -0.86 16 24 H 0.28 15.02 8.29 -92.71 -0.77 14.26 16 25 H 0.40 14.66 8.45 -92.70 -0.78 13.88 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.41 7.21 6.51 -92.71 -0.60 6.61 16 31 H 0.16 1.53 6.40 -2.91 -0.02 1.51 16 32 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.14 2.54 7.65 -2.91 -0.02 2.52 16 Total: -1.00 -77.85 325.57 0.02 -77.82 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.22 Total: 25.67 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 3.94 Total: 17.56 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.90 Total: -102.66 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -0.13 Total: -59.49 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.17 kcal Total: -77.85 0.02 -77.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132649027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.516 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds