Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35224 * 107.86971 * 179.89501 * 11 10 9 13 13 C 1.40427 * 107.86759 * 0.36573 * 12 11 10 14 14 N 1.40074 * 125.97868 * 179.75172 * 13 12 11 15 15 C 1.34768 * 120.00005 * 0.02562 * 14 13 12 16 16 O 1.21540 * 120.00131 * 359.97438 * 15 14 13 17 17 C 1.48045 * 120.00188 * 180.02562 * 15 14 13 18 18 C 1.39833 * 120.92323 * 359.71664 * 17 15 14 19 19 C 1.38247 * 119.00477 * 179.77887 * 18 17 15 20 20 Cl 1.73598 * 119.55057 * 180.27508 * 19 18 17 21 21 N 1.31935 * 120.90462 * 0.50843 * 19 18 17 22 22 C 1.31793 * 122.05805 * 359.73791 * 21 19 18 23 23 C 1.38308 * 120.88813 * 0.02562 * 22 21 19 24 24 Cl 1.73596 * 120.49987 * 179.97438 * 23 22 21 25 25 N 1.31241 * 108.04491 * 359.77729 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.08005 * 126.06211 * 0.02562 * 11 10 9 30 30 H 1.08002 * 126.06872 * 180.14357 * 12 11 10 31 31 H 0.97005 * 119.99859 * 180.02562 * 14 13 12 32 32 H 1.08005 * 120.49774 * 0.02796 * 18 17 15 33 33 H 1.07999 * 119.55829 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2633 -5.4433 0.5311 13 6 3.8673 -4.9129 -0.6203 14 7 4.9606 -5.4613 -1.3030 15 6 5.5271 -6.6019 -0.8621 16 8 5.0897 -7.1545 0.1281 17 6 6.6829 -7.1813 -1.5833 18 6 7.1987 -6.5644 -2.7273 19 6 8.2821 -7.1373 -3.3671 20 17 8.9384 -6.3794 -4.7844 21 7 8.8213 -8.2545 -2.9180 22 6 8.3634 -8.8710 -1.8469 23 6 7.2858 -8.3651 -1.1427 24 17 6.6906 -9.1857 0.2665 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5907 -4.7506 1.7301 30 1 3.5589 -6.3455 1.0461 31 1 5.3099 -5.0201 -2.0931 32 1 6.7599 -5.6519 -3.1031 33 1 8.8354 -9.7839 -1.5150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153810746.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = 84.067295 kcal Electronic energy + Delta-G solvation = -23090.579419 eV Core-core repulsion = 19205.808199 eV Total energy + Delta-G solvation = -3884.771219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39245 -40.64803 -39.24203 -37.33075 -36.90221 -35.15638 -33.95853 -33.28155 -31.49563 -30.89750 -29.51984 -26.74185 -25.53448 -24.29323 -23.14725 -22.03330 -20.77942 -19.96053 -18.58273 -17.68565 -17.26517 -16.86593 -16.61822 -16.15190 -15.84925 -15.25284 -15.06431 -14.92386 -14.29508 -14.08058 -13.82877 -13.29742 -13.14450 -12.97525 -12.56122 -12.36176 -12.05396 -11.90081 -11.78487 -11.49943 -11.24059 -10.88670 -10.74744 -10.63648 -10.57523 -10.19901 -10.13988 -9.71498 -9.41806 -9.07788 -8.63409 -8.35155 -7.67110 -6.63436 -4.38071 -0.15350 0.08544 1.09849 1.59054 2.13470 2.33910 2.65309 2.96173 3.34583 3.35965 3.46481 3.54369 3.55686 3.66281 3.93714 4.02103 4.11957 4.36654 4.64628 4.77902 4.90802 5.10240 5.33372 5.44836 5.56529 5.97525 6.26489 6.33567 6.48650 6.66654 6.85450 7.10294 7.28591 7.59705 7.72395 7.85143 8.27242 8.40186 8.55013 9.30237 10.74297 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002677 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.048509 B =10456.598253 C =12129.400936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.314 5.314 11 C 0.053 3.947 12 C -0.282 4.282 13 C 0.256 3.744 14 N -0.619 5.619 15 C 0.560 3.440 16 O -0.479 6.479 17 C -0.061 4.061 18 C -0.112 4.112 19 C 0.172 3.828 20 Cl -0.010 7.010 21 N -0.447 5.447 22 C 0.132 3.868 23 C -0.042 4.042 24 Cl 0.001 6.999 25 N -0.296 5.296 26 H 0.267 0.733 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.411 0.589 32 H 0.161 0.839 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.064 -18.005 -4.628 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.095 5.095 11 C -0.097 4.097 12 C -0.313 4.313 13 C 0.003 3.997 14 N -0.267 5.267 15 C 0.344 3.656 16 O -0.350 6.350 17 C -0.073 4.073 18 C -0.134 4.134 19 C 0.008 3.992 20 Cl 0.019 6.981 21 N -0.159 5.159 22 C -0.027 4.027 23 C -0.072 4.072 24 Cl 0.030 6.970 25 N -0.127 5.127 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.187 0.813 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.178 0.822 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 16.068 -16.035 -5.171 23.282 hybrid contribution -0.237 -1.687 0.472 1.768 sum 15.831 -17.722 -4.699 24.223 Atomic orbital electron populations 1.70857 1.06788 1.30456 1.45780 1.25926 0.96295 1.02821 0.93061 0.83424 0.74833 0.74556 0.76876 1.20484 1.21206 1.21094 1.22092 0.95379 0.90396 1.56931 0.91807 1.19801 0.86268 0.82764 0.98114 1.48832 1.23159 1.19500 1.18031 1.22584 1.00401 0.90025 0.96690 1.21524 1.02099 1.06327 1.01348 1.18966 0.91383 0.94526 0.94820 1.42173 1.29948 1.24352 1.30200 1.17648 0.82625 0.80638 0.84667 1.90834 1.61097 1.59214 1.23877 1.20100 0.96816 0.94895 0.95504 1.22118 0.95645 1.01456 0.94190 1.21610 0.92930 0.92494 0.92121 1.98452 1.85678 1.78282 1.35691 1.67076 1.29042 1.07398 1.12347 1.22798 0.91680 0.99191 0.88986 1.22288 0.96999 0.94461 0.93498 1.98463 1.86733 1.76175 1.35626 1.77371 1.03399 1.15924 1.16022 0.92252 0.93506 0.94647 0.81313 0.81968 0.75280 0.82198 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.65 55.43 0.76 -25.11 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 24.43 29.90 -169.99 -5.08 19.35 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.61 -16.74 9.24 -34.44 -0.32 -17.06 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.25 6.10 5.57 -5.19 -0.03 6.07 16 10 N -0.31 -7.02 3.67 -62.56 -0.23 -7.25 16 11 C 0.05 1.00 11.43 -17.25 -0.20 0.80 16 12 C -0.28 -5.21 9.60 -39.83 -0.38 -5.60 16 13 C 0.26 4.81 8.11 -154.45 -1.25 3.55 16 14 N -0.62 -8.78 5.40 -11.94 -0.06 -8.84 16 15 C 0.56 7.42 7.76 -12.24 -0.09 7.33 16 16 O -0.48 -7.39 11.29 5.33 0.06 -7.33 16 17 C -0.06 -0.62 5.91 -104.63 -0.62 -1.24 16 18 C -0.11 -0.95 9.38 -38.98 -0.37 -1.32 16 19 C 0.17 1.53 7.27 -17.50 -0.13 1.40 16 20 Cl -0.01 -0.08 29.10 -51.86 -1.51 -1.59 16 21 N -0.45 -4.09 10.31 -10.38 -0.11 -4.19 16 22 C 0.13 1.02 10.98 -17.54 -0.19 0.83 16 23 C -0.04 -0.39 6.38 -38.91 -0.25 -0.64 16 24 Cl 0.00 0.01 26.23 -51.86 -1.36 -1.35 16 25 N -0.30 -6.52 12.42 31.43 0.39 -6.13 16 26 H 0.27 7.46 7.22 -40.82 -0.29 7.17 16 27 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 28 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 29 H 0.17 2.59 8.06 -52.48 -0.42 2.16 16 30 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 31 H 0.41 4.63 6.96 -40.82 -0.28 4.35 16 32 H 0.16 1.02 6.54 -52.48 -0.34 0.68 16 33 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -32.24 326.88 -8.25 -40.50 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.11 Total: 2.34 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.92 Total: -5.32 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.75 Total: -51.53 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.06 Total: -7.33 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -2.87 Total: -2.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.24 -8.25 -40.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153810746.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.566 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds