Wall clock time and date at job start Sat Apr 11 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35224 * 107.86971 * 179.89501 * 11 10 9 13 13 C 1.40427 * 107.86759 * 0.36573 * 12 11 10 14 14 N 1.40074 * 125.97868 * 179.75172 * 13 12 11 15 15 C 1.34768 * 120.00005 * 0.02562 * 14 13 12 16 16 O 1.21540 * 120.00131 * 359.97438 * 15 14 13 17 17 C 1.48045 * 120.00188 * 180.02562 * 15 14 13 18 18 C 1.39833 * 120.92323 * 359.71664 * 17 15 14 19 19 C 1.38247 * 119.00477 * 179.77887 * 18 17 15 20 20 Cl 1.73598 * 119.55057 * 180.27508 * 19 18 17 21 21 N 1.31935 * 120.90462 * 0.50843 * 19 18 17 22 22 C 1.31793 * 122.05805 * 359.73791 * 21 19 18 23 23 C 1.38308 * 120.88813 * 0.02562 * 22 21 19 24 24 Cl 1.73596 * 120.49987 * 179.97438 * 23 22 21 25 25 N 1.31241 * 108.04491 * 359.77729 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.08005 * 126.06211 * 0.02562 * 11 10 9 30 30 H 1.08002 * 126.06872 * 180.14357 * 12 11 10 31 31 H 0.97005 * 119.99859 * 180.02562 * 14 13 12 32 32 H 1.08005 * 120.49774 * 0.02796 * 18 17 15 33 33 H 1.07999 * 119.55829 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2633 -5.4433 0.5311 13 6 3.8673 -4.9129 -0.6203 14 7 4.9606 -5.4613 -1.3030 15 6 5.5271 -6.6019 -0.8621 16 8 5.0897 -7.1545 0.1281 17 6 6.6829 -7.1813 -1.5833 18 6 7.1987 -6.5644 -2.7273 19 6 8.2821 -7.1373 -3.3671 20 17 8.9384 -6.3794 -4.7844 21 7 8.8213 -8.2545 -2.9180 22 6 8.3634 -8.8710 -1.8469 23 6 7.2858 -8.3651 -1.1427 24 17 6.6906 -9.1857 0.2665 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5907 -4.7506 1.7301 30 1 3.5589 -6.3455 1.0461 31 1 5.3099 -5.0201 -2.0931 32 1 6.7599 -5.6519 -3.1031 33 1 8.8354 -9.7839 -1.5150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153810746.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:46 Heat of formation + Delta-G solvation = 64.220132 kcal Electronic energy + Delta-G solvation = -23091.440056 eV Core-core repulsion = 19205.808199 eV Total energy + Delta-G solvation = -3885.631857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50881 -41.80116 -40.35250 -38.03624 -37.62781 -36.54265 -35.68639 -34.27980 -32.58990 -32.15705 -31.06225 -28.39943 -26.65920 -25.21465 -24.77164 -23.20788 -22.23778 -21.26562 -19.60165 -19.23274 -18.60931 -17.92690 -17.57399 -17.11735 -16.94963 -16.68168 -16.07760 -15.79477 -15.67975 -15.53532 -15.22643 -14.96736 -14.20455 -13.99408 -13.79169 -13.75535 -13.66918 -13.23576 -12.69979 -12.61424 -12.47879 -12.30519 -12.11102 -11.95686 -11.72805 -11.49138 -11.37703 -11.02217 -10.73625 -10.69191 -10.11004 -9.88601 -9.26618 -8.78004 -6.56063 -0.95288 -0.57888 0.41888 0.83823 0.88652 1.10756 1.37001 1.51972 1.57816 1.79205 1.98469 2.07418 2.31338 2.48888 2.94493 3.01412 3.11755 3.28290 3.33109 3.81932 3.92336 4.08753 4.18599 4.22568 4.52954 4.64237 4.76915 4.79853 4.83816 5.01284 5.54297 5.74118 5.89957 6.02117 6.18523 6.25468 6.40531 6.70854 6.90513 7.19641 8.58824 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002677 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.048509 B =10456.598253 C =12129.400936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.118 2.882 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.047 0.953 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.056 3.944 12 C -0.285 4.285 13 C 0.268 3.732 14 N -0.614 5.614 15 C 0.565 3.435 16 O -0.500 6.500 17 C -0.070 4.070 18 C -0.104 4.104 19 C 0.167 3.833 20 Cl -0.004 7.004 21 N -0.456 5.456 22 C 0.144 3.856 23 C -0.044 4.044 24 Cl -0.007 7.007 25 N -0.340 5.340 26 H 0.261 0.739 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.202 0.798 30 H 0.174 0.826 31 H 0.424 0.576 32 H 0.179 0.821 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.775 -18.775 -4.768 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.065 0.935 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.092 4.092 12 C -0.316 4.316 13 C 0.013 3.987 14 N -0.264 5.264 15 C 0.351 3.649 16 O -0.373 6.373 17 C -0.082 4.082 18 C -0.126 4.126 19 C 0.004 3.996 20 Cl 0.025 6.975 21 N -0.167 5.167 22 C -0.015 4.015 23 C -0.075 4.075 24 Cl 0.022 6.978 25 N -0.170 5.170 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.219 0.781 30 H 0.191 0.809 31 H 0.263 0.737 32 H 0.196 0.804 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 17.804 -16.841 -5.328 25.079 hybrid contribution -0.667 -1.619 0.484 1.817 sum 17.137 -18.460 -4.843 25.649 Atomic orbital electron populations 1.70949 1.07499 1.30224 1.47336 1.27244 0.96411 1.06050 0.92086 0.82895 0.74162 0.71165 0.77847 1.20138 1.19650 1.19953 1.22291 0.94748 0.92088 1.56851 0.93496 1.19436 0.86391 0.82748 0.97444 1.48589 1.23917 1.20157 1.19618 1.23203 1.00640 0.88715 0.96644 1.21745 1.01957 1.06552 1.01363 1.19272 0.91459 0.93343 0.94611 1.42256 1.28916 1.24738 1.30513 1.18057 0.82773 0.79794 0.84321 1.90811 1.61882 1.59648 1.24931 1.19832 0.96352 0.95685 0.96326 1.22229 0.95262 1.01765 0.93300 1.21719 0.92985 0.92560 0.92341 1.98457 1.85558 1.78175 1.35314 1.67157 1.29252 1.07574 1.12745 1.23253 0.90693 0.99596 0.87920 1.22419 0.97437 0.94217 0.93411 1.98464 1.86902 1.76281 1.36156 1.77286 1.04575 1.17923 1.17256 0.92923 0.92785 0.96455 0.78117 0.80857 0.73741 0.80413 0.76806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 13.65 21.45 0.29 -53.00 16 2 C -0.02 -1.00 5.46 84.65 0.46 -0.53 16 3 Si 1.12 48.79 29.90 68.60 2.05 50.84 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.62 -34.59 9.24 25.60 0.24 -34.35 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 12.96 5.57 85.64 0.48 13.44 16 10 N -0.34 -15.38 3.67 -351.85 -1.29 -16.67 16 11 C 0.06 2.08 11.43 83.52 0.95 3.04 16 12 C -0.29 -10.29 9.60 22.11 0.21 -10.08 16 13 C 0.27 9.91 8.11 133.35 1.08 10.99 16 14 N -0.61 -16.78 5.40 -309.96 -1.67 -18.46 16 15 C 0.56 14.23 7.76 86.85 0.67 14.90 16 16 O -0.50 -14.86 11.29 -3.84 -0.04 -14.90 16 17 C -0.07 -1.31 5.91 -19.87 -0.12 -1.43 16 18 C -0.10 -1.56 9.38 22.66 0.21 -1.35 16 19 C 0.17 2.62 7.27 84.68 0.62 3.24 16 20 Cl 0.00 -0.05 29.10 -2.72 -0.08 -0.13 16 21 N -0.46 -7.24 10.31 -186.76 -1.93 -9.17 16 22 C 0.14 1.86 10.98 84.72 0.93 2.79 16 23 C -0.04 -0.75 6.38 22.70 0.14 -0.60 16 24 Cl -0.01 -0.14 26.23 -2.72 -0.07 -0.21 16 25 N -0.34 -15.06 12.42 -54.48 -0.68 -15.73 16 26 H 0.26 14.86 7.22 -92.71 -0.67 14.20 16 27 H 0.05 2.59 7.94 -2.39 -0.02 2.57 16 28 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 29 H 0.20 5.83 8.06 -2.91 -0.02 5.81 16 30 H 0.17 5.88 5.91 -2.91 -0.02 5.86 16 31 H 0.42 9.05 6.96 -92.70 -0.65 8.40 16 32 H 0.18 1.89 6.54 -2.91 -0.02 1.88 16 33 H 0.22 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -69.14 326.88 3.13 -66.01 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.66 Total: 11.37 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.88 Total: 0.05 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -5.27 Total: -113.03 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.04 Total: -14.90 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.15 Total: -0.35 kcal Total: -69.14 3.13 -66.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153810746.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.235 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds