Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47473 * 34.99539 * 13 12 11 15 15 C 1.50703 * 109.46742 * 274.99779 * 13 12 11 16 16 N 1.34776 * 119.99629 * 179.97438 * 15 13 12 17 17 O 1.21272 * 120.00293 * 0.02562 * 15 13 12 18 18 C 1.50693 * 109.47182 * 155.00014 * 13 12 11 19 19 C 1.38263 * 119.99560 * 39.72482 * 18 13 12 20 20 C 1.38225 * 120.02124 * 179.73000 * 19 18 13 21 21 C 1.38235 * 120.00712 * 0.54403 * 20 19 18 22 22 C 1.38305 * 119.99370 * 359.72683 * 21 20 19 23 23 Br 1.89097 * 120.01439 * 180.02562 * 22 21 20 24 24 C 1.38196 * 119.99831 * 219.99815 * 18 13 12 25 25 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 27 27 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 28 28 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 29 29 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 30 30 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 31 31 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 32 32 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 33 33 H 0.97004 * 120.00252 * 0.02562 * 16 15 13 34 34 H 0.97003 * 119.99772 * 179.97438 * 16 15 13 35 35 H 1.08003 * 119.98931 * 359.97438 * 19 18 13 36 36 H 1.08002 * 119.99174 * 180.27408 * 20 19 18 37 37 H 1.07997 * 120.00718 * 179.70931 * 21 20 19 38 38 H 1.08006 * 119.99921 * 0.02562 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 1 0.8215 -7.3132 -0.5879 15 6 1.3857 -7.7771 1.4172 16 7 0.7346 -8.9314 1.6625 17 8 1.6900 -7.0457 2.3354 18 6 2.6271 -8.4505 -0.5980 19 6 3.9792 -8.4581 -0.3091 20 6 4.7975 -9.4295 -0.8546 21 6 4.2663 -10.3870 -1.6982 22 6 2.9149 -10.3765 -1.9921 23 35 2.1874 -11.6865 -3.1455 24 6 2.0953 -9.4075 -1.4414 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6043 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8538 -5.0445 0.8913 32 1 3.0696 -6.0362 0.7832 33 1 0.4908 -9.5163 0.9281 34 1 0.5104 -9.1776 2.5736 35 1 4.3954 -7.7073 0.3462 36 1 5.8528 -9.4376 -0.6250 37 1 4.9065 -11.1431 -2.1282 38 1 1.0399 -9.3985 -1.6709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179222185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = -26.026200 kcal Electronic energy + Delta-G solvation = -20644.948687 eV Core-core repulsion = 17339.640043 eV Total energy + Delta-G solvation = -3305.308644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55956 -39.02967 -36.12043 -34.18366 -33.61677 -32.60079 -32.01373 -30.59875 -29.42366 -27.25690 -25.20735 -23.03576 -22.39969 -22.22080 -20.44997 -19.95979 -17.90955 -17.32309 -16.98969 -16.27198 -15.86928 -15.56501 -14.96461 -14.64609 -14.49346 -14.11000 -13.85020 -13.77760 -13.49848 -13.44956 -12.52921 -12.16992 -11.88912 -11.56900 -11.47221 -11.38060 -11.19047 -10.82247 -10.64379 -10.54900 -10.50073 -10.43619 -9.91698 -9.66505 -9.35488 -9.20779 -9.04274 -8.92765 -8.39493 -8.29361 -5.94940 -3.96760 0.79111 0.89724 1.27918 2.39825 3.16392 3.37398 3.40982 3.41412 3.44274 4.16160 4.40246 4.48492 4.52543 4.70187 4.74227 4.93926 5.00094 5.08062 5.39656 5.40863 5.49465 5.76697 5.80371 5.92875 6.03804 6.14174 6.34535 6.44086 6.52061 6.68628 6.75976 7.01433 7.16968 7.22602 7.47245 7.73221 7.88852 8.01722 8.05649 8.48858 9.10111 9.66836 11.16599 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.002229 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.817736 B =12561.301920 C =13012.688848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.056 3.944 12 N -0.659 5.659 13 C 0.105 3.895 14 H 0.115 0.885 15 C 0.494 3.506 16 N -0.852 5.852 17 O -0.531 6.531 18 C -0.061 4.061 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.089 4.089 23 Br -0.054 7.054 24 C -0.087 4.087 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.351 0.649 33 H 0.400 0.600 34 H 0.400 0.600 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -30.437 -4.288 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.290 5.290 13 C -0.010 4.010 14 H 0.133 0.867 15 C 0.277 3.723 16 N -0.416 5.416 17 O -0.407 6.407 18 C -0.062 4.062 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.169 4.169 23 Br 0.031 6.969 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.172 0.828 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.474 -30.158 -4.939 30.885 hybrid contribution -0.034 0.779 1.136 1.378 sum 4.441 -29.379 -3.803 29.955 Atomic orbital electron populations 1.69957 1.06061 1.26625 1.51036 1.25025 0.94846 0.99233 0.95414 0.86655 0.79572 0.83140 0.78616 1.20233 1.21342 1.20260 1.21219 0.93033 0.91053 1.50347 0.92702 1.19051 0.93996 0.91291 0.97110 1.21593 0.99241 0.92632 1.00822 1.22244 0.94231 0.90536 1.00183 1.60924 1.19254 0.99146 1.49707 1.20586 0.97603 0.90914 0.91848 0.86714 1.21735 0.76934 0.80963 0.92709 1.43921 1.61535 1.23436 1.12714 1.90795 1.53090 1.50855 1.45926 1.19480 0.94456 0.94739 0.97574 1.21179 0.92805 0.97126 0.98132 1.21197 1.00357 0.94458 0.97052 1.21129 0.93148 0.99162 0.97688 1.21671 0.95796 0.97792 1.01605 1.96733 1.85038 1.52343 1.62758 1.20933 0.99941 0.93496 0.96397 0.93014 0.96615 0.96740 0.93409 0.92522 0.91364 0.94796 0.82832 0.77161 0.76966 0.84968 0.84892 0.85071 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.10 -2.24 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 0.99 5.38 -3.82 -0.02 0.97 16 12 N -0.66 -9.57 5.55 -109.19 -0.61 -10.17 16 13 C 0.11 1.20 2.60 -70.02 -0.18 1.02 16 14 H 0.12 1.19 7.66 -51.93 -0.40 0.79 16 15 C 0.49 5.99 7.24 -10.98 -0.08 5.92 16 16 N -0.85 -6.78 8.77 31.22 0.27 -6.51 16 17 O -0.53 -8.84 16.14 5.56 0.09 -8.75 16 18 C -0.06 -0.59 4.74 -104.63 -0.50 -1.09 16 19 C -0.07 -0.72 9.32 -39.58 -0.37 -1.09 16 20 C -0.11 -0.91 10.05 -39.59 -0.40 -1.31 16 21 C -0.09 -0.73 9.79 -39.56 -0.39 -1.12 16 22 C -0.09 -0.76 6.22 -39.52 -0.25 -1.00 16 23 Br -0.05 -0.42 33.70 -68.01 -2.29 -2.72 16 24 C -0.09 -0.74 9.25 -39.56 -0.37 -1.11 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.03 0.64 7.62 -51.93 -0.40 0.25 16 32 H 0.35 5.28 7.09 -39.29 -0.28 5.00 16 33 H 0.40 2.13 8.56 -40.82 -0.35 1.78 16 34 H 0.40 2.82 8.93 -40.82 -0.36 2.45 16 35 H 0.13 1.32 7.24 -52.48 -0.38 0.94 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.90 8.04 -52.48 -0.42 0.47 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -33.65 345.77 -9.93 -43.58 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.08 Total: 3.63 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -3.24 Total: -14.58 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.40 Total: -43.49 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.65 -9.93 -43.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179222185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.552 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds