Wall clock time and date at job start Sat Apr 11 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47279 * 325.00167 * 13 12 11 15 15 C 1.50694 * 109.47106 * 85.00220 * 13 12 11 16 16 N 1.34778 * 120.00413 * 179.97438 * 15 13 12 17 17 O 1.21286 * 119.99825 * 359.97438 * 15 13 12 18 18 C 1.50701 * 109.46893 * 205.00308 * 13 12 11 19 19 C 1.38264 * 119.99409 * 140.00174 * 18 13 12 20 20 C 1.38218 * 120.02067 * 179.97438 * 19 18 13 21 21 C 1.38242 * 120.00740 * 359.97438 * 20 19 18 22 22 C 1.38298 * 119.99287 * 359.97438 * 21 20 19 23 23 Br 1.89101 * 120.01220 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99494 * 319.71925 * 18 13 12 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.00899 * 111.00283 * 303.95539 * 12 11 10 33 33 H 0.97002 * 119.99598 * 0.02562 * 16 15 13 34 34 H 0.96996 * 120.00328 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.98972 * 359.97438 * 19 18 13 36 36 H 1.07998 * 119.99614 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00041 * 180.02562 * 21 20 19 38 38 H 1.07992 * 120.00437 * 0.02562 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8213 -7.3132 0.5880 15 6 1.3855 -7.7772 -1.4171 16 7 0.7352 -8.9320 -1.6626 17 8 1.6899 -7.0457 -2.3354 18 6 2.6270 -8.4506 0.5981 19 6 2.0948 -9.4079 1.4419 20 6 2.9129 -10.3766 1.9921 21 6 4.2637 -10.3890 1.6984 22 6 4.7964 -9.4323 0.8536 23 35 6.6439 -9.4491 0.4510 24 6 3.9764 -8.4651 0.3003 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 3.0690 -6.0367 -0.7836 33 1 0.4915 -9.5169 -0.9282 34 1 0.5104 -9.1778 -2.5736 35 1 1.0394 -9.3988 1.6712 36 1 2.4968 -11.1240 2.6514 37 1 4.9029 -11.1463 2.1280 38 1 4.3913 -7.7198 -0.3621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179222198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:09 Heat of formation + Delta-G solvation = -25.869472 kcal Electronic energy + Delta-G solvation = -20702.621262 eV Core-core repulsion = 17397.319414 eV Total energy + Delta-G solvation = -3305.301848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55372 -39.02015 -36.10581 -34.19656 -33.59013 -32.61955 -31.99087 -30.40393 -29.53513 -27.24878 -25.21407 -22.99491 -22.51949 -22.02986 -20.51260 -19.96678 -17.91586 -17.31770 -16.98611 -16.25580 -15.83466 -15.54904 -14.94988 -14.68699 -14.47358 -14.10671 -13.84696 -13.75642 -13.49597 -13.41098 -12.48830 -12.16429 -11.93144 -11.57366 -11.44129 -11.37175 -11.16121 -10.85311 -10.55234 -10.51653 -10.43823 -10.42599 -9.91446 -9.65891 -9.34627 -9.14369 -9.01098 -8.94800 -8.38148 -8.29266 -5.94649 -3.96108 0.75144 0.95665 1.37691 2.40125 3.15836 3.35437 3.41213 3.42611 3.47737 4.18370 4.36961 4.50044 4.53396 4.70875 4.74338 4.89804 4.99014 5.13760 5.32459 5.41425 5.56591 5.77305 5.86161 5.94330 5.96987 6.11877 6.35393 6.42734 6.52349 6.69784 6.77214 7.01848 7.17981 7.23999 7.47961 7.74438 7.89516 8.02264 8.06270 8.49772 9.11222 9.67615 11.16970 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002650 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.025789 B =10564.067764 C =11822.025853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.660 5.660 13 C 0.105 3.895 14 H 0.116 0.884 15 C 0.493 3.507 16 N -0.852 5.852 17 O -0.530 6.530 18 C -0.061 4.061 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.093 4.093 22 C -0.088 4.088 23 Br -0.051 7.051 24 C -0.061 4.061 25 H 0.259 0.741 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.351 0.649 33 H 0.400 0.600 34 H 0.400 0.600 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 -29.471 3.073 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.071 4.071 12 N -0.291 5.291 13 C -0.009 4.009 14 H 0.134 0.866 15 C 0.276 3.724 16 N -0.416 5.416 17 O -0.406 6.406 18 C -0.063 4.063 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.168 4.168 23 Br 0.034 6.966 24 C -0.082 4.082 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.172 0.828 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.522 -28.703 3.129 29.836 hybrid contribution -0.601 0.516 -0.814 1.136 sum 6.921 -28.187 2.315 29.116 Atomic orbital electron populations 1.69983 1.06056 1.26374 1.51286 1.25032 0.94850 0.99261 0.95446 0.86538 0.80189 0.83814 0.77495 1.19697 1.21083 1.21052 1.21301 0.93128 0.91025 1.49995 0.92583 1.19060 0.94001 0.91335 0.97100 1.21598 0.99244 0.92631 1.00875 1.22240 0.94208 0.90555 1.00139 1.60949 1.19233 0.99189 1.49728 1.20605 0.97554 0.90939 0.91845 0.86599 1.21760 0.76938 0.80988 0.92757 1.43909 1.61620 1.23408 1.12688 1.90802 1.52969 1.50875 1.45931 1.19500 0.93608 0.95270 0.97926 1.21156 1.00403 0.94192 0.96207 1.21091 0.92961 0.99037 1.00062 1.21128 0.95826 0.97593 0.96703 1.21791 0.91114 1.00440 1.03417 1.96744 1.07154 1.98721 1.93972 1.20966 0.92685 0.96257 0.98242 0.93153 0.96744 0.96606 0.92511 0.93381 0.91380 0.94809 0.82815 0.77192 0.76982 0.85113 0.84915 0.85078 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.01 5.38 -3.82 -0.02 0.99 16 12 N -0.66 -9.80 5.56 -109.18 -0.61 -10.41 16 13 C 0.11 1.20 2.60 -70.02 -0.18 1.02 16 14 H 0.12 1.15 7.66 -51.93 -0.40 0.75 16 15 C 0.49 6.02 7.23 -10.99 -0.08 5.94 16 16 N -0.85 -6.61 8.77 31.22 0.27 -6.34 16 17 O -0.53 -8.96 16.14 5.55 0.09 -8.87 16 18 C -0.06 -0.60 4.74 -104.63 -0.50 -1.10 16 19 C -0.10 -0.73 9.51 -39.58 -0.38 -1.10 16 20 C -0.11 -0.75 10.05 -39.59 -0.40 -1.15 16 21 C -0.09 -0.74 9.79 -39.56 -0.39 -1.13 16 22 C -0.09 -0.88 6.22 -39.52 -0.25 -1.13 16 23 Br -0.05 -0.51 33.70 -68.01 -2.29 -2.80 16 24 C -0.06 -0.68 9.06 -39.56 -0.36 -1.03 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 31 H 0.03 0.64 7.62 -51.93 -0.40 0.25 16 32 H 0.35 5.51 7.10 -39.29 -0.28 5.23 16 33 H 0.40 1.90 8.55 -40.82 -0.35 1.55 16 34 H 0.40 2.78 8.93 -40.82 -0.36 2.41 16 35 H 0.13 0.60 8.04 -52.49 -0.42 0.18 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 1.62 7.25 -52.49 -0.38 1.24 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -34.28 345.80 -9.93 -44.21 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.08 Total: 3.17 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.24 Total: -14.54 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.40 Total: -43.59 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.28 -9.93 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179222198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.341 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds