Wall clock time and date at job start Sat Apr 11 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47279 * 325.00167 * 13 12 11 15 15 C 1.50694 * 109.47106 * 85.00220 * 13 12 11 16 16 N 1.34778 * 120.00413 * 179.97438 * 15 13 12 17 17 O 1.21286 * 119.99825 * 359.97438 * 15 13 12 18 18 C 1.50701 * 109.46893 * 205.00308 * 13 12 11 19 19 C 1.38264 * 119.99409 * 140.00174 * 18 13 12 20 20 C 1.38218 * 120.02067 * 179.97438 * 19 18 13 21 21 C 1.38242 * 120.00740 * 359.97438 * 20 19 18 22 22 C 1.38298 * 119.99287 * 359.97438 * 21 20 19 23 23 Br 1.89101 * 120.01220 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99494 * 319.71925 * 18 13 12 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.00899 * 111.00283 * 303.95539 * 12 11 10 33 33 H 0.97002 * 119.99598 * 0.02562 * 16 15 13 34 34 H 0.96996 * 120.00328 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.98972 * 359.97438 * 19 18 13 36 36 H 1.07998 * 119.99614 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00041 * 180.02562 * 21 20 19 38 38 H 1.07992 * 120.00437 * 0.02562 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 1 0.8213 -7.3132 0.5880 15 6 1.3855 -7.7772 -1.4171 16 7 0.7352 -8.9320 -1.6626 17 8 1.6899 -7.0457 -2.3354 18 6 2.6270 -8.4506 0.5981 19 6 2.0948 -9.4079 1.4419 20 6 2.9129 -10.3766 1.9921 21 6 4.2637 -10.3890 1.6984 22 6 4.7964 -9.4323 0.8536 23 35 6.6439 -9.4491 0.4510 24 6 3.9764 -8.4651 0.3003 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 3.0690 -6.0367 -0.7836 33 1 0.4915 -9.5169 -0.9282 34 1 0.5104 -9.1778 -2.5736 35 1 1.0394 -9.3988 1.6712 36 1 2.4968 -11.1240 2.6514 37 1 4.9029 -11.1463 2.1280 38 1 4.3913 -7.7198 -0.3621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179222198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:09 Heat of formation + Delta-G solvation = -50.543547 kcal Electronic energy + Delta-G solvation = -20703.691210 eV Core-core repulsion = 17397.319414 eV Total energy + Delta-G solvation = -3306.371796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43778 -39.80109 -37.44560 -35.60643 -34.91450 -33.73300 -33.11278 -31.70314 -30.25762 -28.67336 -26.73271 -24.32336 -23.44922 -22.99173 -22.00195 -21.13435 -18.81395 -18.52354 -18.05921 -17.78410 -16.71058 -16.54672 -16.41519 -16.08554 -15.47618 -15.36392 -15.14396 -14.62899 -14.39502 -14.28168 -14.13352 -13.62498 -13.43630 -13.20766 -12.77720 -12.48439 -12.47416 -12.16563 -12.07514 -11.92099 -11.64078 -11.41422 -11.36899 -11.25233 -11.11474 -10.74706 -10.56083 -9.85912 -9.71083 -9.53827 -8.20679 -6.31402 0.10690 0.29367 0.67454 1.39311 1.39911 1.46775 1.53721 2.40652 2.41890 2.66595 3.12293 3.15071 3.55077 3.83838 3.98530 4.04226 4.19215 4.25365 4.31854 4.40359 4.50226 4.67029 4.72522 4.92054 4.96986 5.02851 5.21654 5.23534 5.36909 5.45825 5.50824 5.73211 5.75959 5.83416 5.85077 5.90624 6.15260 6.26220 6.36785 6.84940 7.22551 7.37562 8.91593 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002650 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.025789 B =10564.067764 C =11822.025853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.660 5.660 13 C 0.108 3.892 14 H 0.137 0.863 15 C 0.491 3.509 16 N -0.827 5.827 17 O -0.587 6.587 18 C -0.072 4.072 19 C -0.090 4.090 20 C -0.103 4.103 21 C -0.093 4.093 22 C -0.103 4.103 23 Br -0.062 7.062 24 C -0.083 4.083 25 H 0.264 0.736 26 H -0.014 1.014 27 H -0.002 1.002 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.344 0.656 33 H 0.418 0.582 34 H 0.407 0.593 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -31.233 4.630 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.290 5.290 13 C -0.006 4.006 14 H 0.155 0.845 15 C 0.274 3.726 16 N -0.391 5.391 17 O -0.467 6.467 18 C -0.073 4.073 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.183 4.183 23 Br 0.023 6.977 24 C -0.104 4.104 25 H 0.073 0.927 26 H 0.005 0.995 27 H 0.017 0.983 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.164 0.836 33 H 0.250 0.750 34 H 0.238 0.762 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.249 -30.537 4.710 31.737 hybrid contribution -0.566 0.941 -1.271 1.680 sum 6.683 -29.596 3.439 30.535 Atomic orbital electron populations 1.70104 1.07741 1.27714 1.51775 1.25992 0.95832 1.03373 0.94689 0.85380 0.78998 0.78669 0.77897 1.18776 1.20373 1.19979 1.21721 0.93494 0.92477 1.50435 0.92447 1.18943 0.94320 0.92936 0.94788 1.21348 0.98121 0.93062 1.00477 1.21909 0.93935 0.89932 0.99826 1.60872 1.18691 1.00027 1.49401 1.20686 0.98494 0.89578 0.91888 0.84520 1.21880 0.76742 0.81484 0.92474 1.43678 1.59531 1.22038 1.13900 1.90783 1.55542 1.52926 1.47419 1.19389 0.92787 0.95883 0.99285 1.21521 1.02209 0.92805 0.94343 1.21518 0.92085 0.99096 0.99420 1.21454 0.96974 0.97101 0.95749 1.21880 0.90650 1.01222 1.04528 1.96722 1.08006 1.98754 1.94172 1.20886 0.93707 0.96704 0.99064 0.92729 0.99545 0.98340 0.92354 0.94151 0.90261 0.96485 0.83614 0.75025 0.76174 0.81689 0.81315 0.83407 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 45.80 29.54 68.60 2.03 47.82 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -32.44 9.11 25.60 0.23 -32.21 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.09 -4.10 5.41 30.59 0.17 -3.93 16 11 C 0.07 2.64 5.38 86.30 0.46 3.10 16 12 N -0.66 -19.79 5.56 -499.34 -2.78 -22.57 16 13 C 0.11 2.34 2.60 43.42 0.11 2.45 16 14 H 0.14 2.36 7.66 -2.39 -0.02 2.35 16 15 C 0.49 11.74 7.23 87.65 0.63 12.37 16 16 N -0.83 -11.31 8.77 -173.53 -1.52 -12.84 16 17 O -0.59 -20.46 16.14 -3.05 -0.05 -20.51 16 18 C -0.07 -1.28 4.74 -19.87 -0.09 -1.37 16 19 C -0.09 -0.94 9.51 22.27 0.21 -0.73 16 20 C -0.10 -0.93 10.05 22.27 0.22 -0.70 16 21 C -0.09 -1.24 9.79 22.28 0.22 -1.02 16 22 C -0.10 -1.97 6.22 22.31 0.14 -1.83 16 23 Br -0.06 -1.22 33.70 -20.37 -0.69 -1.91 16 24 C -0.08 -1.81 9.06 22.29 0.20 -1.61 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 31 H 0.02 0.67 7.62 -2.39 -0.02 0.65 16 32 H 0.34 11.32 7.10 -89.69 -0.64 10.68 16 33 H 0.42 2.63 8.55 -92.71 -0.79 1.83 16 34 H 0.41 5.01 8.93 -92.71 -0.83 4.18 16 35 H 0.17 0.59 8.04 -2.91 -0.02 0.56 16 36 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.11 2.87 7.25 -2.91 -0.02 2.85 16 Total: -1.00 -77.08 345.80 -0.76 -77.84 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -1.15 Total: 13.53 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.12 Total: -23.40 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.02 Total: -93.38 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -0.69 Total: -1.91 kcal Total: -77.08 -0.76 -77.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179222198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.296 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds