Wall clock time and date at job start Sat Apr 11 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97506 * 179.70134 * 13 12 11 15 15 C 1.34771 * 120.00147 * 0.02562 * 14 13 12 16 16 O 1.21535 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.48135 * 120.00215 * 180.02562 * 15 14 13 18 18 C 1.39239 * 119.71153 * 179.72837 * 17 15 14 19 19 C 1.38771 * 119.06897 * 179.72860 * 18 17 15 20 20 Cl 1.73603 * 120.76141 * 180.26059 * 19 18 17 21 21 C 1.38708 * 118.47804 * 0.53041 * 19 18 17 22 22 C 1.38654 * 119.33154 * 359.72921 * 21 19 18 23 23 Cl 1.73606 * 119.55929 * 179.97438 * 22 21 19 24 24 N 1.31648 * 120.88933 * 0.02562 * 22 21 19 25 25 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 30 30 H 1.07995 * 126.06273 * 180.11922 * 12 11 10 31 31 H 0.97003 * 119.99929 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.46718 * 359.97438 * 18 17 15 33 33 H 1.08006 * 120.33482 * 179.70923 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9600 -5.4617 -1.3034 15 6 5.5262 -6.6026 -0.8629 16 8 5.0885 -7.1554 0.1270 17 6 6.6827 -7.1823 -1.5845 18 6 7.2666 -8.3583 -1.1208 19 6 8.3458 -8.8927 -1.8103 20 17 9.1028 -10.3603 -1.2749 21 6 8.8094 -8.2243 -2.9338 22 6 8.1825 -7.0545 -3.3351 23 17 8.7583 -6.2128 -4.7401 24 7 7.1571 -6.5728 -2.6644 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5912 -4.7502 1.7306 30 1 3.5580 -6.3462 1.0452 31 1 5.3096 -5.0203 -2.0932 32 1 6.8824 -8.8497 -0.2391 33 1 9.6504 -8.6110 -3.4903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185641431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:26 Heat of formation + Delta-G solvation = 75.296604 kcal Electronic energy + Delta-G solvation = -22817.730912 eV Core-core repulsion = 18932.579366 eV Total energy + Delta-G solvation = -3885.151545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39045 -40.61036 -39.13481 -37.54201 -37.12479 -35.09105 -33.79122 -33.01676 -32.03793 -30.82952 -29.46712 -26.70483 -25.44171 -24.26676 -23.14478 -22.00156 -20.71937 -19.89302 -18.51383 -17.83521 -17.21966 -16.90255 -16.48817 -15.94972 -15.91912 -15.29265 -14.98023 -14.86564 -14.41768 -14.04545 -13.80006 -13.27649 -13.20264 -13.13841 -12.52244 -12.35677 -12.05058 -11.98326 -11.88987 -11.72080 -11.19023 -10.84592 -10.79053 -10.55919 -10.26838 -10.23948 -10.17894 -9.85573 -9.75906 -9.03111 -8.59211 -8.28823 -7.61473 -6.59666 -4.33838 -0.20309 0.16708 0.90478 1.36087 1.98655 2.44836 2.67627 3.03976 3.35855 3.36862 3.41052 3.57753 3.62209 3.83247 3.99226 4.02733 4.35437 4.40083 4.59792 4.69794 5.10566 5.14106 5.35607 5.47859 5.65085 6.05108 6.29747 6.37086 6.52171 6.71247 6.77624 7.20627 7.35777 7.64806 7.77488 7.94270 8.32528 8.46872 8.59587 9.34323 10.78139 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002351 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.935587 B =11908.796207 C =13248.260133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.314 5.314 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.254 3.746 14 N -0.605 5.605 15 C 0.579 3.421 16 O -0.501 6.501 17 C 0.126 3.874 18 C -0.099 4.099 19 C 0.012 3.988 20 Cl -0.026 7.026 21 C -0.127 4.127 22 C 0.189 3.811 23 Cl -0.005 7.005 24 N -0.448 5.448 25 N -0.293 5.293 26 H 0.267 0.733 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.171 0.829 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.781 -20.434 -5.320 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.315 4.315 13 C 0.001 3.999 14 N -0.251 5.251 15 C 0.362 3.638 16 O -0.374 6.374 17 C -0.014 4.014 18 C -0.121 4.121 19 C -0.023 4.023 20 Cl 0.004 6.996 21 C -0.149 4.149 22 C 0.022 3.978 23 Cl 0.024 6.976 24 N -0.162 5.162 25 N -0.124 5.124 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.187 0.813 30 H 0.180 0.820 31 H 0.261 0.739 32 H 0.189 0.811 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 17.791 -17.391 -5.774 25.540 hybrid contribution 0.938 -2.836 0.264 2.999 sum 18.730 -20.227 -5.510 28.112 Atomic orbital electron populations 1.70826 1.06782 1.30460 1.45964 1.25925 0.96307 1.02825 0.93098 0.83388 0.74735 0.74312 0.76971 1.21200 1.21187 1.20695 1.22127 0.95436 0.90372 1.56712 0.91749 1.19802 0.86279 0.82793 0.98105 1.48856 1.23190 1.19491 1.18053 1.22578 1.00415 0.90045 0.96706 1.21523 1.02226 1.06317 1.01408 1.19034 0.91510 0.94535 0.94828 1.42134 1.29008 1.23833 1.30162 1.17427 0.81892 0.80572 0.83888 1.90774 1.61601 1.60397 1.24581 1.20879 0.95954 0.92748 0.91792 1.22135 0.93762 0.95100 1.01073 1.21061 0.95175 0.90842 0.95196 1.98440 1.80190 1.31835 1.89182 1.21968 1.01876 0.94430 0.96631 1.21496 0.92849 0.91369 0.92072 1.98459 1.85962 1.77603 1.35594 1.66959 1.10763 1.32485 1.06012 1.77408 1.03258 1.15887 1.15846 0.92243 0.93509 0.94629 0.81291 0.82028 0.73946 0.81140 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.65 55.43 0.76 -25.48 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.96 29.90 -169.99 -5.08 19.88 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.61 -17.03 9.24 -34.44 -0.32 -17.35 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.22 5.57 -5.19 -0.03 6.19 16 10 N -0.31 -7.26 3.67 -62.56 -0.23 -7.49 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.43 9.60 -39.83 -0.38 -5.81 16 13 C 0.25 5.08 8.11 -154.46 -1.25 3.83 16 14 N -0.60 -9.77 5.43 -11.91 -0.06 -9.83 16 15 C 0.58 8.33 7.78 -12.20 -0.09 8.24 16 16 O -0.50 -8.02 13.45 5.33 0.07 -7.95 16 17 C 0.13 1.41 6.75 -83.03 -0.56 0.85 16 18 C -0.10 -0.89 9.45 -39.01 -0.37 -1.25 16 19 C 0.01 0.09 6.37 -39.21 -0.25 -0.16 16 20 Cl -0.03 -0.16 29.02 -51.86 -1.50 -1.66 16 21 C -0.13 -0.86 9.70 -39.25 -0.38 -1.24 16 22 C 0.19 1.68 7.27 -17.48 -0.13 1.55 16 23 Cl 0.00 -0.04 29.10 -51.86 -1.51 -1.55 16 24 N -0.45 -4.94 9.52 -6.96 -0.07 -5.00 16 25 N -0.29 -6.79 12.42 31.43 0.39 -6.40 16 26 H 0.27 7.56 7.22 -40.82 -0.29 7.27 16 27 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 28 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 29 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 30 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 31 H 0.42 6.24 8.15 -40.82 -0.33 5.90 16 32 H 0.17 1.39 7.64 -52.48 -0.40 0.99 16 33 H 0.16 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.85 333.01 -8.50 -40.35 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.22 Total: 3.90 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -4.06 Total: -3.79 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.79 Total: -54.20 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -3.01 Total: -3.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.85 -8.50 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185641431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.643 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds