Wall clock time and date at job start Sat Apr 11 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40060 * 125.97506 * 179.70134 * 13 12 11 15 15 C 1.34771 * 120.00147 * 0.02562 * 14 13 12 16 16 O 1.21535 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.48135 * 120.00215 * 180.02562 * 15 14 13 18 18 C 1.39239 * 119.71153 * 179.72837 * 17 15 14 19 19 C 1.38771 * 119.06897 * 179.72860 * 18 17 15 20 20 Cl 1.73603 * 120.76141 * 180.26059 * 19 18 17 21 21 C 1.38708 * 118.47804 * 0.53041 * 19 18 17 22 22 C 1.38654 * 119.33154 * 359.72921 * 21 19 18 23 23 Cl 1.73606 * 119.55929 * 179.97438 * 22 21 19 24 24 N 1.31648 * 120.88933 * 0.02562 * 22 21 19 25 25 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 26 26 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 28 28 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 29 29 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 30 30 H 1.07995 * 126.06273 * 180.11922 * 12 11 10 31 31 H 0.97003 * 119.99929 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.46718 * 359.97438 * 18 17 15 33 33 H 1.08006 * 120.33482 * 179.70923 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9600 -5.4617 -1.3034 15 6 5.5262 -6.6026 -0.8629 16 8 5.0885 -7.1554 0.1270 17 6 6.6827 -7.1823 -1.5845 18 6 7.2666 -8.3583 -1.1208 19 6 8.3458 -8.8927 -1.8103 20 17 9.1028 -10.3603 -1.2749 21 6 8.8094 -8.2243 -2.9338 22 6 8.1825 -7.0545 -3.3351 23 17 8.7583 -6.2128 -4.7401 24 7 7.1571 -6.5728 -2.6644 25 7 3.2287 -3.8132 -0.9445 26 1 -0.4850 -0.8400 0.0004 27 1 0.6281 -2.5591 0.8866 28 1 0.6207 -2.5548 -0.8933 29 1 1.5912 -4.7502 1.7306 30 1 3.5580 -6.3462 1.0452 31 1 5.3096 -5.0203 -2.0932 32 1 6.8824 -8.8497 -0.2391 33 1 9.6504 -8.6110 -3.4903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185641431.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:25 Heat of formation + Delta-G solvation = 55.667830 kcal Electronic energy + Delta-G solvation = -22818.582079 eV Core-core repulsion = 18932.579366 eV Total energy + Delta-G solvation = -3886.002713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.023 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.51906 -41.84855 -40.30386 -38.12839 -37.77393 -36.56899 -35.64096 -33.83397 -32.97492 -32.38498 -31.07486 -28.40153 -26.61900 -25.06786 -24.88702 -23.23740 -22.24202 -21.27266 -19.56026 -19.23005 -18.68785 -18.16914 -17.36999 -17.02496 -16.87097 -16.75975 -16.12045 -15.74635 -15.67083 -15.52171 -15.44015 -14.99043 -14.20351 -13.96171 -13.78949 -13.78423 -13.74536 -13.24382 -12.78181 -12.61617 -12.59854 -12.29568 -12.12884 -11.98582 -11.84884 -11.56327 -11.07679 -11.02521 -10.87961 -10.69213 -10.46660 -9.89546 -9.27451 -8.78707 -6.56257 -0.95614 -0.50290 0.26519 0.72841 0.80216 1.14116 1.27595 1.50314 1.57989 1.77981 1.93478 2.05871 2.35346 2.47682 2.72836 3.00760 3.32071 3.35471 3.60681 3.78649 3.91768 3.99645 4.11863 4.48464 4.53978 4.65028 4.75230 4.78520 4.80628 4.97555 5.53702 5.73102 5.88321 5.91499 6.13906 6.25632 6.40788 6.70166 6.90149 7.18965 8.58225 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002351 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.935587 B =11908.796207 C =13248.260133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.286 4.286 13 C 0.263 3.737 14 N -0.608 5.608 15 C 0.584 3.416 16 O -0.518 6.518 17 C 0.108 3.892 18 C -0.090 4.090 19 C 0.015 3.985 20 Cl -0.008 7.008 21 C -0.103 4.103 22 C 0.179 3.821 23 Cl 0.000 7.000 24 N -0.467 5.467 25 N -0.342 5.342 26 H 0.262 0.738 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.207 0.793 30 H 0.177 0.823 31 H 0.427 0.573 32 H 0.178 0.822 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.816 -21.869 -5.191 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.942 3.058 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.317 4.317 13 C 0.008 3.992 14 N -0.255 5.255 15 C 0.369 3.631 16 O -0.392 6.392 17 C -0.030 4.030 18 C -0.111 4.111 19 C -0.020 4.020 20 Cl 0.021 6.979 21 C -0.125 4.125 22 C 0.012 3.988 23 Cl 0.028 6.972 24 N -0.182 5.182 25 N -0.173 5.173 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.223 0.777 30 H 0.194 0.806 31 H 0.266 0.734 32 H 0.195 0.805 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 19.840 -18.872 -5.641 27.957 hybrid contribution 0.453 -2.603 0.179 2.648 sum 20.293 -21.475 -5.462 30.047 Atomic orbital electron populations 1.70917 1.07402 1.30242 1.47352 1.27246 0.96451 1.06021 0.92090 0.82858 0.73821 0.71060 0.78061 1.19255 1.20691 1.20028 1.22300 0.94641 0.92161 1.56844 0.93776 1.19458 0.86367 0.82693 0.97547 1.48629 1.23835 1.20229 1.19580 1.23246 1.00550 0.88529 0.96620 1.21764 1.02056 1.06669 1.01203 1.19381 0.91530 0.93481 0.94783 1.42286 1.28361 1.24548 1.30353 1.17891 0.82104 0.79508 0.83584 1.90737 1.62377 1.60640 1.25416 1.20324 0.95978 0.93988 0.92754 1.22188 0.93781 0.94071 1.01105 1.21054 0.94642 0.91309 0.95027 1.98456 1.79709 1.30693 1.89036 1.22288 1.01536 0.92848 0.95802 1.21681 0.92726 0.92169 0.92236 1.98463 1.85747 1.77703 1.35247 1.66801 1.11823 1.33298 1.06292 1.77316 1.04654 1.18003 1.17348 0.92879 0.92478 0.96468 0.77671 0.80618 0.73422 0.80489 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 13.65 21.45 0.29 -53.66 16 2 C -0.02 -1.03 5.46 84.65 0.46 -0.56 16 3 Si 1.12 50.13 29.90 68.60 2.05 52.18 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.62 -35.52 9.24 25.60 0.24 -35.29 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.28 5.57 85.64 0.48 13.75 16 10 N -0.34 -16.01 3.67 -351.84 -1.29 -17.30 16 11 C 0.06 2.25 11.43 83.52 0.95 3.21 16 12 C -0.29 -10.82 9.60 22.11 0.21 -10.61 16 13 C 0.26 10.62 8.11 133.36 1.08 11.70 16 14 N -0.61 -19.83 5.43 -309.88 -1.68 -21.51 16 15 C 0.58 16.62 7.78 86.87 0.68 17.29 16 16 O -0.52 -16.25 13.45 -3.83 -0.05 -16.30 16 17 C 0.11 2.33 6.75 41.87 0.28 2.61 16 18 C -0.09 -1.45 9.45 22.64 0.21 -1.23 16 19 C 0.01 0.18 6.37 22.51 0.14 0.32 16 20 Cl -0.01 -0.08 29.02 -2.72 -0.08 -0.16 16 21 C -0.10 -1.10 9.70 22.48 0.22 -0.88 16 22 C 0.18 2.87 7.27 84.82 0.62 3.48 16 23 Cl 0.00 0.00 29.10 -2.72 -0.08 -0.08 16 24 N -0.47 -9.89 9.52 -175.93 -1.67 -11.56 16 25 N -0.34 -16.28 12.42 -54.49 -0.68 -16.96 16 26 H 0.26 15.09 7.22 -92.71 -0.67 14.42 16 27 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 28 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 29 H 0.21 6.03 8.06 -2.91 -0.02 6.01 16 30 H 0.18 6.12 5.91 -2.91 -0.02 6.11 16 31 H 0.43 12.92 8.15 -92.71 -0.76 12.16 16 32 H 0.18 2.57 7.64 -2.91 -0.02 2.55 16 33 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -69.38 333.01 2.93 -66.45 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.55 Total: 15.11 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.57 Total: 3.80 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -5.03 Total: -121.00 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.05 Total: -16.30 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.16 Total: -0.24 kcal Total: -69.38 2.93 -66.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185641431.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.115 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds