Wall clock time and date at job start Sat Apr 11 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34770 * 120.00446 * 2 1 4 4 O 1.21685 * 120.00517 * 180.02562 * 3 2 1 5 5 C 1.46381 * 119.99713 * 359.72498 * 3 2 1 6 6 H 1.07989 * 120.00129 * 0.27842 * 5 3 2 7 7 C 1.40054 * 119.99673 * 180.27689 * 5 3 2 8 8 N 1.30666 * 120.00250 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99749 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47144 * 89.99726 * 9 7 5 11 11 H 1.48501 * 109.47259 * 209.99797 * 9 7 5 12 12 H 1.48500 * 109.47316 * 329.99896 * 9 7 5 13 13 C 1.46505 * 119.99621 * 180.02562 * 2 1 3 14 14 H 1.09001 * 109.46565 * 235.55320 * 13 2 1 15 15 C 1.50697 * 109.47538 * 115.55861 * 13 2 1 16 16 N 1.34777 * 120.00414 * 179.97438 * 15 13 2 17 17 O 1.21288 * 119.99759 * 359.97438 * 15 13 2 18 18 C 1.50696 * 109.47219 * 355.55401 * 13 2 1 19 19 C 1.38265 * 119.99436 * 57.96518 * 18 13 2 20 20 C 1.38221 * 120.01686 * 179.72784 * 19 18 13 21 21 C 1.38237 * 120.00884 * 0.54507 * 20 19 18 22 22 C 1.38302 * 119.99407 * 359.72251 * 21 20 19 23 23 Br 1.89099 * 120.00983 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99494 * 238.23665 * 18 13 2 25 25 H 1.09005 * 109.47355 * 93.66034 * 1 2 3 26 26 H 1.08998 * 109.47592 * 213.66105 * 1 2 3 27 27 H 1.09005 * 109.46736 * 333.66487 * 1 2 3 28 28 H 0.96999 * 120.00406 * 180.02562 * 8 7 5 29 29 H 0.97000 * 119.99470 * 0.02562 * 16 15 13 30 30 H 0.96998 * 120.00205 * 179.97438 * 16 15 13 31 31 H 1.08003 * 119.98733 * 359.97438 * 19 18 13 32 32 H 1.08005 * 119.99037 * 180.26950 * 20 19 18 33 33 H 1.08006 * 120.00228 * 179.71119 * 21 20 19 34 34 H 1.07998 * 120.00505 * 0.02562 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3558 1.1671 -0.0005 5 6 1.4070 2.4348 -0.0061 6 1 0.3272 2.4349 -0.0060 7 6 2.1074 3.6476 -0.0119 8 7 3.4141 3.6476 -0.0115 9 14 1.1735 5.2654 -0.0190 10 1 0.9266 5.7005 1.3793 11 1 1.9758 6.2971 -0.7241 12 1 -0.1243 5.0847 -0.7177 13 6 2.1974 -1.2688 -0.0006 14 1 2.8825 -1.2932 0.8469 15 6 2.9794 -1.3969 -1.2823 16 7 3.7343 -2.4911 -1.5048 17 8 2.9295 -0.5153 -2.1139 18 6 1.2218 -2.4121 0.1091 19 6 0.2239 -2.5623 -0.8362 20 6 -0.6677 -3.6140 -0.7392 21 6 -0.5691 -4.5096 0.3092 22 6 0.4255 -4.3566 1.2580 23 35 0.5613 -5.5819 2.6918 24 6 1.3211 -3.3070 1.1574 25 1 -0.3634 -0.0656 -1.0256 26 1 -0.3634 -0.8553 0.5696 27 1 -0.3633 0.9211 0.4559 28 1 3.8992 4.4875 -0.0152 29 1 3.7739 -3.1963 -0.8399 30 1 4.2374 -2.5737 -2.3300 31 1 0.1437 -1.8599 -1.6527 32 1 -1.4444 -3.7334 -1.4802 33 1 -1.2688 -5.3287 0.3874 34 1 2.0976 -3.1868 1.8984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186043713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:29 Heat of formation + Delta-G solvation = -28.848374 kcal Electronic energy + Delta-G solvation = -21734.512647 eV Core-core repulsion = 18293.248529 eV Total energy + Delta-G solvation = -3441.264117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29116 -38.51127 -36.99896 -34.39161 -33.16569 -32.45028 -32.23866 -31.42369 -29.34886 -28.02632 -26.02584 -24.64906 -22.52636 -22.02098 -20.64730 -18.92939 -17.28510 -16.73845 -16.47795 -16.35880 -15.64871 -15.22054 -15.06723 -14.36829 -14.18271 -13.83697 -13.61683 -13.38374 -13.24951 -12.89784 -12.36897 -12.05681 -11.65062 -11.50012 -11.21608 -11.18893 -11.07198 -10.84040 -10.81315 -10.45188 -10.23783 -10.08221 -9.57185 -9.17492 -9.01032 -8.79967 -8.69209 -7.54874 -7.28091 -6.13890 -4.58366 0.95359 1.10283 1.45600 3.17320 3.23826 3.26773 3.27510 3.42595 3.82941 4.16583 4.55158 4.62775 4.65031 4.72594 4.94776 5.14864 5.22210 5.37737 5.53219 5.70717 5.77887 5.86784 5.96369 6.01196 6.20442 6.38210 6.46222 6.53738 6.63984 7.21933 7.44439 7.49875 7.78379 8.11404 8.33210 8.87754 9.07529 9.41829 10.63062 10.81830 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.003374 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.318588 B = 8297.155072 C = 8705.215108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.626 5.626 3 C 0.567 3.433 4 O -0.565 6.565 5 C -0.539 4.539 6 H 0.072 0.928 7 C 0.088 3.912 8 N -0.766 5.766 9 Si 0.907 3.093 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.183 3.817 14 H 0.094 0.906 15 C 0.510 3.490 16 N -0.864 5.864 17 O -0.501 6.501 18 C -0.075 4.075 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.090 4.090 22 C -0.092 4.092 23 Br -0.056 7.056 24 C -0.078 4.078 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.267 0.733 29 H 0.393 0.607 30 H 0.395 0.605 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -20.362 3.212 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.366 5.366 3 C 0.373 3.627 4 O -0.446 6.446 5 C -0.575 4.575 6 H 0.090 0.910 7 C -0.132 4.132 8 N -0.394 5.394 9 Si 0.731 3.269 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.074 3.926 14 H 0.112 0.888 15 C 0.292 3.708 16 N -0.430 5.430 17 O -0.373 6.373 18 C -0.076 4.076 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.171 4.171 23 Br 0.029 6.971 24 C -0.098 4.098 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.225 0.775 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.243 -19.958 3.325 21.490 hybrid contribution -0.279 0.612 -0.345 0.756 sum -7.521 -19.346 2.980 20.969 Atomic orbital electron populations 1.21650 0.81904 1.01812 0.99439 1.47998 1.05063 1.03020 1.80481 1.18180 0.86995 0.81616 0.75872 1.90593 1.13966 1.85649 1.54414 1.20928 0.93529 0.88915 1.54154 0.90989 1.25718 0.94608 1.00225 0.92666 1.70022 1.07038 1.27156 1.35222 0.86392 0.80218 0.81545 0.78723 1.19773 1.20492 1.18882 1.19362 0.92456 0.84850 0.95938 0.88801 1.21047 0.79535 0.81135 0.89061 1.43858 1.52222 1.22677 1.24222 1.90782 1.62400 1.38281 1.45806 1.19727 0.97092 0.95633 0.95174 1.21422 0.93265 0.96682 0.98351 1.21140 0.99662 0.94474 0.98171 1.21099 0.96834 0.99528 0.93494 1.21668 1.01007 0.97857 0.96556 1.96706 1.98274 1.58204 1.43912 1.21016 0.98410 0.92785 0.97587 0.94959 0.93662 0.90276 0.92195 0.77957 0.77518 0.84722 0.84942 0.85128 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 8.45 59.84 0.51 2.29 16 2 N -0.63 -14.26 2.78 -178.27 -0.50 -14.75 16 3 C 0.57 16.40 6.67 -12.99 -0.09 16.31 16 4 O -0.57 -18.46 13.88 -10.32 -0.14 -18.61 16 5 C -0.54 -15.43 8.75 -35.63 -0.31 -15.74 16 6 H 0.07 1.87 5.92 -52.49 -0.31 1.56 16 7 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 8 N -0.77 -23.44 11.83 55.55 0.66 -22.79 16 9 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.18 3.46 2.65 -70.23 -0.19 3.28 16 14 H 0.09 1.81 7.88 -51.93 -0.41 1.40 16 15 C 0.51 10.23 6.56 -10.99 -0.07 10.15 16 16 N -0.86 -12.28 8.77 31.22 0.27 -12.01 16 17 O -0.50 -12.93 15.85 -9.97 -0.16 -13.09 16 18 C -0.07 -1.05 3.51 -104.63 -0.37 -1.42 16 19 C -0.08 -1.02 6.89 -39.58 -0.27 -1.29 16 20 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 21 C -0.09 -0.88 9.79 -39.56 -0.39 -1.27 16 22 C -0.09 -1.00 6.22 -39.52 -0.25 -1.24 16 23 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.85 16 24 C -0.08 -0.94 9.41 -39.56 -0.37 -1.31 16 25 H 0.03 0.57 7.04 -51.93 -0.37 0.21 16 26 H 0.04 0.71 5.88 -51.93 -0.31 0.41 16 27 H 0.08 1.53 5.90 -51.93 -0.31 1.23 16 28 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 29 H 0.39 4.27 8.72 -40.82 -0.36 3.91 16 30 H 0.39 5.09 8.93 -40.82 -0.36 4.72 16 31 H 0.13 1.94 6.75 -52.48 -0.35 1.59 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.14 1.53 7.95 -52.49 -0.42 1.11 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -37.73 311.49 -7.94 -45.68 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.17 Total: 7.67 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -2.29 Total: 10.57 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.44 Total: -49.55 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.30 Total: -31.70 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.73 -7.94 -45.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186043713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.828 kcal (2) G-P(sol) polarization free energy of solvation -37.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds