Wall clock time and date at job start Sat Apr 11 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34770 * 120.00446 * 2 1 4 4 O 1.21685 * 120.00517 * 180.02562 * 3 2 1 5 5 C 1.46381 * 119.99713 * 359.72498 * 3 2 1 6 6 H 1.07989 * 120.00129 * 0.27842 * 5 3 2 7 7 C 1.40054 * 119.99673 * 180.27689 * 5 3 2 8 8 N 1.30666 * 120.00250 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99749 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47144 * 89.99726 * 9 7 5 11 11 H 1.48501 * 109.47259 * 209.99797 * 9 7 5 12 12 H 1.48500 * 109.47316 * 329.99896 * 9 7 5 13 13 C 1.46505 * 119.99621 * 180.02562 * 2 1 3 14 14 H 1.09001 * 109.46565 * 235.55320 * 13 2 1 15 15 C 1.50697 * 109.47538 * 115.55861 * 13 2 1 16 16 N 1.34777 * 120.00414 * 179.97438 * 15 13 2 17 17 O 1.21288 * 119.99759 * 359.97438 * 15 13 2 18 18 C 1.50696 * 109.47219 * 355.55401 * 13 2 1 19 19 C 1.38265 * 119.99436 * 57.96518 * 18 13 2 20 20 C 1.38221 * 120.01686 * 179.72784 * 19 18 13 21 21 C 1.38237 * 120.00884 * 0.54507 * 20 19 18 22 22 C 1.38302 * 119.99407 * 359.72251 * 21 20 19 23 23 Br 1.89099 * 120.00983 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99494 * 238.23665 * 18 13 2 25 25 H 1.09005 * 109.47355 * 93.66034 * 1 2 3 26 26 H 1.08998 * 109.47592 * 213.66105 * 1 2 3 27 27 H 1.09005 * 109.46736 * 333.66487 * 1 2 3 28 28 H 0.96999 * 120.00406 * 180.02562 * 8 7 5 29 29 H 0.97000 * 119.99470 * 0.02562 * 16 15 13 30 30 H 0.96998 * 120.00205 * 179.97438 * 16 15 13 31 31 H 1.08003 * 119.98733 * 359.97438 * 19 18 13 32 32 H 1.08005 * 119.99037 * 180.26950 * 20 19 18 33 33 H 1.08006 * 120.00228 * 179.71119 * 21 20 19 34 34 H 1.07998 * 120.00505 * 0.02562 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3558 1.1671 -0.0005 5 6 1.4070 2.4348 -0.0061 6 1 0.3272 2.4349 -0.0060 7 6 2.1074 3.6476 -0.0119 8 7 3.4141 3.6476 -0.0115 9 14 1.1735 5.2654 -0.0190 10 1 0.9266 5.7005 1.3793 11 1 1.9758 6.2971 -0.7241 12 1 -0.1243 5.0847 -0.7177 13 6 2.1974 -1.2688 -0.0006 14 1 2.8825 -1.2932 0.8469 15 6 2.9794 -1.3969 -1.2823 16 7 3.7343 -2.4911 -1.5048 17 8 2.9295 -0.5153 -2.1139 18 6 1.2218 -2.4121 0.1091 19 6 0.2239 -2.5623 -0.8362 20 6 -0.6677 -3.6140 -0.7392 21 6 -0.5691 -4.5096 0.3092 22 6 0.4255 -4.3566 1.2580 23 35 0.5613 -5.5819 2.6918 24 6 1.3211 -3.3070 1.1574 25 1 -0.3634 -0.0656 -1.0256 26 1 -0.3634 -0.8553 0.5696 27 1 -0.3633 0.9211 0.4559 28 1 3.8992 4.4875 -0.0152 29 1 3.7739 -3.1963 -0.8399 30 1 4.2374 -2.5737 -2.3300 31 1 0.1437 -1.8599 -1.6527 32 1 -1.4444 -3.7334 -1.4802 33 1 -1.2688 -5.3287 0.3874 34 1 2.0976 -3.1868 1.8984 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186043713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:29 Heat of formation + Delta-G solvation = -57.366904 kcal Electronic energy + Delta-G solvation = -21735.749303 eV Core-core repulsion = 18293.248529 eV Total energy + Delta-G solvation = -3442.500774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.62816 -39.81526 -38.93022 -36.09847 -34.71494 -34.55788 -33.25014 -32.63672 -30.29844 -29.46543 -28.03445 -26.24798 -23.46209 -23.19593 -22.37743 -20.57033 -18.77234 -18.22475 -17.94923 -17.81533 -17.49843 -16.47675 -16.46869 -15.86236 -15.55089 -15.39765 -15.23780 -14.49305 -14.35372 -14.30015 -14.11660 -13.45562 -13.37644 -13.17230 -13.05557 -12.70600 -12.26749 -12.25840 -12.13821 -12.01363 -11.72810 -11.27808 -11.11659 -10.89797 -10.62918 -10.03935 -9.73249 -9.65408 -9.12846 -8.25672 -6.80570 0.01365 0.18789 0.61137 1.38787 1.41494 1.55831 1.70911 2.21305 2.36928 2.46152 2.61295 3.07652 3.41083 3.67901 3.81627 4.05189 4.11600 4.14668 4.28151 4.39035 4.48003 4.62312 4.84201 4.86227 4.97611 5.13226 5.28998 5.38877 5.43195 5.69066 5.73095 5.93187 6.09612 6.26159 6.53004 6.90543 7.39841 7.42949 8.51590 8.71581 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.003374 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.318588 B = 8297.155072 C = 8705.215108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.630 5.630 3 C 0.551 3.449 4 O -0.618 6.618 5 C -0.569 4.569 6 H 0.092 0.908 7 C 0.027 3.973 8 N -0.823 5.823 9 Si 0.995 3.005 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.249 1.249 13 C 0.182 3.818 14 H 0.083 0.917 15 C 0.507 3.493 16 N -0.835 5.835 17 O -0.570 6.570 18 C -0.086 4.086 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.075 4.075 22 C -0.094 4.094 23 Br -0.043 7.043 24 C -0.076 4.076 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.272 0.728 29 H 0.413 0.587 30 H 0.405 0.595 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 -22.202 3.726 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.367 5.367 3 C 0.357 3.643 4 O -0.504 6.504 5 C -0.605 4.605 6 H 0.110 0.890 7 C -0.187 4.187 8 N -0.452 5.452 9 Si 0.814 3.186 10 H -0.182 1.182 11 H -0.201 1.201 12 H -0.172 1.172 13 C 0.074 3.926 14 H 0.101 0.899 15 C 0.290 3.710 16 N -0.401 5.401 17 O -0.447 6.447 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.174 4.174 23 Br 0.043 6.957 24 C -0.096 4.096 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.244 0.756 30 H 0.236 0.764 31 H 0.134 0.866 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.980 -21.916 3.866 24.390 hybrid contribution 0.554 0.936 -0.466 1.183 sum -9.426 -20.980 3.400 23.250 Atomic orbital electron populations 1.21758 0.79528 1.02728 1.00446 1.47683 1.06699 1.03227 1.79043 1.18503 0.86656 0.83673 0.75457 1.90530 1.16093 1.87160 1.56568 1.21510 0.94754 0.89806 1.54461 0.89038 1.26997 0.95508 1.04943 0.91288 1.70210 1.09555 1.28629 1.36836 0.85064 0.78781 0.75186 0.79535 1.18166 1.20121 1.17215 1.19417 0.93344 0.85028 0.94848 0.89888 1.21296 0.79640 0.81277 0.88748 1.43525 1.50160 1.21451 1.24928 1.90747 1.64968 1.40932 1.48019 1.19280 0.97291 0.95016 0.97196 1.21330 0.93983 0.97687 0.97708 1.21396 0.99110 0.92881 0.98632 1.21470 0.96252 0.99575 0.92211 1.21791 1.00798 0.97555 0.97217 1.96739 1.98268 1.57383 1.43349 1.20987 0.98933 0.92778 0.96905 0.94139 0.90395 0.91255 0.91867 0.75635 0.76378 0.86601 0.81921 0.82220 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.64 8.45 127.77 1.08 4.72 16 2 N -0.63 -29.59 2.78 -836.14 -2.32 -31.91 16 3 C 0.55 33.36 6.67 86.36 0.58 33.94 16 4 O -0.62 -42.79 13.88 10.54 0.15 -42.64 16 5 C -0.57 -33.55 8.75 24.83 0.22 -33.33 16 6 H 0.09 4.82 5.92 -2.92 -0.02 4.80 16 7 C 0.03 1.58 5.50 85.31 0.47 2.05 16 8 N -0.82 -52.58 11.83 21.84 0.26 -52.32 16 9 Si 1.00 42.63 29.56 68.60 2.03 44.66 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 13 C 0.18 7.08 2.65 43.50 0.12 7.19 16 14 H 0.08 3.35 7.88 -2.39 -0.02 3.33 16 15 C 0.51 21.07 6.56 87.66 0.57 21.65 16 16 N -0.83 -23.77 8.77 -173.53 -1.52 -25.29 16 17 O -0.57 -30.99 15.85 11.79 0.19 -30.80 16 18 C -0.09 -2.35 3.51 -19.87 -0.07 -2.42 16 19 C -0.09 -2.14 6.89 22.27 0.15 -1.98 16 20 C -0.10 -1.69 10.05 22.27 0.22 -1.46 16 21 C -0.08 -1.15 9.79 22.28 0.22 -0.93 16 22 C -0.09 -1.75 6.22 22.31 0.14 -1.61 16 23 Br -0.04 -0.72 33.70 -20.37 -0.69 -1.40 16 24 C -0.08 -1.69 9.41 22.29 0.21 -1.48 16 25 H 0.04 1.43 7.04 -2.38 -0.02 1.41 16 26 H 0.08 2.36 5.88 -2.39 -0.01 2.34 16 27 H 0.07 2.68 5.90 -2.38 -0.01 2.67 16 28 H 0.27 15.77 8.29 -92.71 -0.77 15.01 16 29 H 0.41 8.59 8.72 -92.71 -0.81 7.78 16 30 H 0.40 10.38 8.93 -92.71 -0.83 9.55 16 31 H 0.12 3.28 6.75 -2.91 -0.02 3.26 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.14 2.95 7.95 -2.91 -0.02 2.93 16 Total: -1.00 -88.18 311.49 1.54 -86.64 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.45 Total: 26.75 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 3.91 Total: 26.33 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.59 Total: -109.53 kcal Atomic # 8 Polarization: -73.78 SS G_CDS: 0.33 Total: -73.44 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.40 kcal Total: -88.18 1.54 -86.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186043713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.275 kcal (2) G-P(sol) polarization free energy of solvation -88.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds