Wall clock time and date at job start Sat Apr 11 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.38137 * 119.96982 * 104.99896 * 14 13 11 16 16 C 1.39955 * 118.92161 * 180.02562 * 15 14 13 17 17 O 1.22098 * 120.51920 * 180.02562 * 16 15 14 18 18 N 1.35024 * 118.96382 * 0.02562 * 16 15 14 19 19 C 1.36214 * 119.64583 * 180.02562 * 18 16 15 20 20 C 1.35299 * 120.72085 * 180.02562 * 19 18 16 21 21 Cl 1.73611 * 119.93545 * 179.97438 * 20 19 18 22 22 C 1.40280 * 120.13134 * 359.96096 * 20 19 18 23 23 C 1.36255 * 119.55343 * 0.02562 * 22 20 19 24 24 C 1.36689 * 119.87410 * 359.97438 * 18 16 15 25 25 N 1.32366 * 119.97370 * 284.73374 * 14 13 11 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 32 32 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 33 33 H 1.08003 * 120.54088 * 359.97438 * 15 14 13 34 34 H 1.07991 * 119.63742 * 0.02562 * 19 18 16 35 35 H 1.08001 * 120.22293 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.26643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 2.0710 -8.6087 -1.1551 16 6 1.5059 -9.8888 -1.1294 17 8 1.4970 -10.5829 -2.1339 18 7 0.9707 -10.3443 0.0235 19 6 0.4176 -11.5884 0.0643 20 6 -0.1252 -12.0664 1.2078 21 17 -0.8254 -13.6547 1.2366 22 6 -0.1230 -11.2811 2.3702 23 6 0.4284 -10.0355 2.3388 24 6 0.9883 -9.5564 1.1403 25 7 1.5334 -8.3414 1.1102 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 3.2807 -6.3422 -0.8910 32 1 3.2820 -6.3421 0.8890 33 1 2.5049 -8.2185 -2.0639 34 1 0.4122 -12.1999 -0.8258 35 1 -0.5563 -11.6610 3.2837 36 1 0.4366 -9.4214 3.2271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190788949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:38 Heat of formation + Delta-G solvation = -2.889110 kcal Electronic energy + Delta-G solvation = -23287.091437 eV Core-core repulsion = 19504.133555 eV Total energy + Delta-G solvation = -3782.957882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.05273 -38.85258 -38.12046 -37.11994 -35.19135 -34.44770 -33.70001 -32.74431 -30.91705 -30.19574 -28.88496 -25.61201 -25.37329 -24.16932 -23.15135 -21.20716 -19.53968 -19.09454 -18.04164 -17.17077 -16.98012 -16.55532 -16.46288 -15.93692 -15.23906 -14.92046 -14.72047 -14.51143 -14.28863 -14.22235 -14.05653 -13.54180 -13.32628 -13.08609 -12.96429 -12.75043 -12.35482 -12.04340 -11.73237 -11.70389 -11.32113 -11.01009 -10.97558 -10.76018 -10.67209 -10.35806 -10.17660 -10.16302 -9.81305 -9.45020 -9.01061 -8.43540 -8.12340 -7.76822 -6.06503 -4.10857 -0.36114 -0.08215 1.07824 1.40205 1.90285 1.96863 2.14686 3.04902 3.28246 3.34895 3.37891 3.42091 3.43851 3.75865 3.91321 3.99435 4.12449 4.33183 4.41518 4.70907 4.85511 4.98727 5.06865 5.21843 5.28586 5.35068 5.45983 5.52918 5.64628 5.90974 5.96857 6.09627 6.11199 6.76353 7.34253 7.41262 7.46316 7.57546 7.88414 8.29146 8.93800 9.53427 11.04083 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002091 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.464066 B =13388.784403 C =13892.001935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.417 4.417 11 S 1.234 4.766 12 O -0.825 6.825 13 C -0.423 4.423 14 C 0.240 3.760 15 C -0.321 4.321 16 C 0.511 3.489 17 O -0.531 6.531 18 N -0.427 5.427 19 C 0.113 3.887 20 C -0.091 4.091 21 Cl -0.029 7.029 22 C -0.037 4.037 23 C -0.109 4.109 24 C 0.390 3.610 25 N -0.520 5.520 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.023 0.977 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.190 0.810 35 H 0.162 0.838 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -27.130 0.810 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.557 4.557 11 S 1.432 4.568 12 O -0.821 6.821 13 C -0.554 4.554 14 C 0.111 3.889 15 C -0.347 4.347 16 C 0.318 3.682 17 O -0.410 6.410 18 N -0.132 5.132 19 C -0.011 4.011 20 C -0.121 4.121 21 Cl 0.000 7.000 22 C -0.061 4.061 23 C -0.130 4.130 24 C 0.145 3.855 25 N -0.243 5.243 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.185 0.815 34 H 0.207 0.793 35 H 0.180 0.820 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.331 -27.097 0.731 27.109 hybrid contribution 1.803 0.650 1.129 2.224 sum 1.471 -26.447 1.860 26.553 Atomic orbital electron populations 1.69959 1.06047 1.26907 1.50193 1.25052 0.94930 0.99380 0.95160 0.86531 0.79745 0.83183 0.78174 1.20465 1.21154 1.19931 1.21137 0.93029 0.90345 1.51335 0.92421 1.18797 0.92974 0.90119 0.98167 1.27643 1.09710 1.12064 1.06275 1.70990 0.86402 0.86858 1.12502 1.93127 1.54997 1.83493 1.50437 1.27027 1.16118 1.03225 1.09036 1.20675 0.86817 0.93810 0.87586 1.22666 1.15339 0.94501 1.02213 1.17240 0.80494 0.89291 0.81210 1.91004 1.59859 1.59266 1.30902 1.44474 1.42039 1.13302 1.13347 1.22018 0.92683 0.86275 1.00160 1.20224 1.05858 0.91223 0.94812 1.98420 1.82216 1.20808 1.98597 1.21417 0.94579 0.92302 0.97821 1.21052 0.99204 0.96178 0.96526 1.20648 0.91854 0.86779 0.86210 1.68883 1.18865 1.08340 1.28239 0.92756 0.95319 0.95825 0.87413 0.90611 0.84507 0.87012 0.81454 0.79344 0.81994 0.80503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.81 16 10 C -0.42 -7.76 5.86 37.16 0.22 -7.54 16 11 S 1.23 19.09 13.14 -107.50 -1.41 17.68 16 12 O -0.83 -17.83 18.14 -35.23 -0.64 -18.47 16 13 C -0.42 -5.10 6.30 36.01 0.23 -4.87 16 14 C 0.24 3.13 6.06 -82.40 -0.50 2.63 16 15 C -0.32 -3.87 9.69 -38.98 -0.38 -4.25 16 16 C 0.51 6.66 7.36 -15.50 -0.11 6.54 16 17 O -0.53 -7.95 16.69 4.83 0.08 -7.87 16 18 N -0.43 -4.73 2.76 -65.33 -0.18 -4.91 16 19 C 0.11 0.96 9.84 -16.65 -0.16 0.80 16 20 C -0.09 -0.60 6.28 -39.86 -0.25 -0.85 16 21 Cl -0.03 -0.17 28.94 -51.86 -1.50 -1.67 16 22 C -0.04 -0.21 9.87 -39.53 -0.39 -0.60 16 23 C -0.11 -0.87 9.96 -39.37 -0.39 -1.26 16 24 C 0.39 4.45 7.33 -155.94 -1.14 3.30 16 25 N -0.52 -7.27 10.25 -8.56 -0.09 -7.36 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.11 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 31 H 0.14 1.13 7.96 -51.92 -0.41 0.72 16 32 H 0.11 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.17 1.64 8.02 -52.48 -0.42 1.22 16 34 H 0.19 1.46 7.34 -52.49 -0.39 1.07 16 35 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -38.05 348.35 -9.93 -47.98 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -3.72 Total: -2.71 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.44 Total: -18.46 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.47 Total: -38.04 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.56 Total: -26.33 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 19.09 SS G_CDS: -1.41 Total: 17.68 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.50 Total: -1.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.05 -9.93 -47.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190788949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.094 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds