Wall clock time and date at job start Sat Apr 11 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.47078 * 296.39075 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.38137 * 119.96982 * 104.99896 * 14 13 11 16 16 C 1.39955 * 118.92161 * 180.02562 * 15 14 13 17 17 O 1.22098 * 120.51920 * 180.02562 * 16 15 14 18 18 N 1.35024 * 118.96382 * 0.02562 * 16 15 14 19 19 C 1.36214 * 119.64583 * 180.02562 * 18 16 15 20 20 C 1.35299 * 120.72085 * 180.02562 * 19 18 16 21 21 Cl 1.73611 * 119.93545 * 179.97438 * 20 19 18 22 22 C 1.40280 * 120.13134 * 359.96096 * 20 19 18 23 23 C 1.36255 * 119.55343 * 0.02562 * 22 20 19 24 24 C 1.36689 * 119.87410 * 359.97438 * 18 16 15 25 25 N 1.32366 * 119.97370 * 284.73374 * 14 13 11 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 32 32 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 33 33 H 1.08003 * 120.54088 * 359.97438 * 15 14 13 34 34 H 1.07991 * 119.63742 * 0.02562 * 19 18 16 35 35 H 1.08001 * 120.22293 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.26643 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2331 0.0002 12 8 0.5864 -5.3452 1.2007 13 6 2.6651 -6.4701 -0.0007 14 6 2.0636 -7.8519 0.0005 15 6 2.0710 -8.6087 -1.1551 16 6 1.5059 -9.8888 -1.1294 17 8 1.4970 -10.5829 -2.1339 18 7 0.9707 -10.3443 0.0235 19 6 0.4176 -11.5884 0.0643 20 6 -0.1252 -12.0664 1.2078 21 17 -0.8254 -13.6547 1.2366 22 6 -0.1230 -11.2811 2.3702 23 6 0.4284 -10.0355 2.3388 24 6 0.9883 -9.5564 1.1403 25 7 1.5334 -8.3414 1.1102 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 3.2807 -6.3422 -0.8910 32 1 3.2820 -6.3421 0.8890 33 1 2.5049 -8.2185 -2.0639 34 1 0.4122 -12.1999 -0.8258 35 1 -0.5563 -11.6610 3.2837 36 1 0.4366 -9.4214 3.2271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190788949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:38 Heat of formation + Delta-G solvation = -29.047548 kcal Electronic energy + Delta-G solvation = -23288.225752 eV Core-core repulsion = 19504.133555 eV Total energy + Delta-G solvation = -3784.092197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.88719 -39.66890 -39.00931 -37.74472 -36.71071 -35.70840 -35.20748 -33.58388 -32.85048 -31.01153 -29.81502 -27.32297 -26.36422 -24.95658 -24.14592 -22.99099 -20.34160 -19.98138 -18.84618 -18.73300 -18.24499 -17.85893 -17.18688 -16.80891 -16.55138 -16.24726 -16.05341 -15.68386 -15.64396 -15.21509 -14.87998 -14.68533 -14.47767 -14.23808 -13.93987 -13.85884 -13.48059 -13.41734 -12.96553 -12.92239 -12.71929 -12.57319 -12.27219 -11.97155 -11.90394 -11.67540 -11.62407 -11.49104 -11.24270 -10.93464 -10.57799 -10.31072 -9.14276 -8.96219 -8.20006 -6.32937 -1.11192 -0.84979 0.37997 0.41943 0.86828 1.16309 1.40741 1.41831 1.42911 1.53440 1.79296 2.41314 2.54383 2.64191 2.86055 3.03683 3.12319 3.21817 3.37088 3.49972 3.90775 4.04085 4.22853 4.31882 4.34506 4.51369 4.59743 4.60031 4.66895 4.75777 4.91268 5.04801 5.09917 5.28437 5.45231 5.53615 5.78980 6.19078 6.40740 6.53529 6.82364 7.36410 8.90909 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.029390 B = 0.002091 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.464066 B =13388.784403 C =13892.001935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.418 4.418 11 S 1.283 4.717 12 O -0.894 6.894 13 C -0.406 4.406 14 C 0.228 3.772 15 C -0.325 4.325 16 C 0.502 3.498 17 O -0.560 6.560 18 N -0.426 5.426 19 C 0.094 3.906 20 C -0.074 4.074 21 Cl -0.012 7.012 22 C -0.008 4.008 23 C -0.121 4.121 24 C 0.379 3.621 25 N -0.560 5.560 26 H 0.265 0.735 27 H 0.023 0.977 28 H -0.024 1.024 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.185 0.815 32 H 0.109 0.891 33 H 0.189 0.811 34 H 0.193 0.807 35 H 0.203 0.797 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -28.685 0.812 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.556 4.556 11 S 1.484 4.516 12 O -0.889 6.889 13 C -0.541 4.541 14 C 0.098 3.902 15 C -0.352 4.352 16 C 0.310 3.690 17 O -0.442 6.442 18 N -0.129 5.129 19 C -0.030 4.030 20 C -0.104 4.104 21 Cl 0.017 6.983 22 C -0.032 4.032 23 C -0.142 4.142 24 C 0.136 3.864 25 N -0.285 5.285 26 H 0.073 0.927 27 H 0.041 0.959 28 H -0.006 1.006 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.127 0.873 33 H 0.207 0.793 34 H 0.210 0.790 35 H 0.220 0.780 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.766 -28.642 0.758 28.662 hybrid contribution 1.394 0.801 1.214 2.014 sum 2.160 -27.841 1.972 27.995 Atomic orbital electron populations 1.70102 1.07862 1.27951 1.51430 1.26053 0.95832 1.03579 0.94745 0.85397 0.78376 0.78148 0.78822 1.18957 1.21180 1.18994 1.21656 0.93737 0.91706 1.50716 0.91528 1.18652 0.93715 0.92368 0.95605 1.27551 1.08636 1.11883 1.07542 1.70199 0.85976 0.85302 1.10112 1.93016 1.58788 1.84479 1.52662 1.26862 1.14615 1.01213 1.11390 1.20764 0.87376 0.94146 0.87882 1.22839 1.15431 0.94211 1.02670 1.17423 0.80671 0.89584 0.81355 1.90978 1.61334 1.60033 1.31889 1.44377 1.41681 1.14018 1.12866 1.22243 0.93716 0.85676 1.01328 1.20399 1.03939 0.91683 0.94404 1.98442 1.81720 1.19582 1.98525 1.21847 0.91944 0.90753 0.98651 1.21283 0.99813 0.97328 0.95746 1.21072 0.91799 0.86391 0.87101 1.68850 1.20574 1.09911 1.29145 0.92652 0.95860 1.00561 0.83733 0.91647 0.79784 0.87263 0.79349 0.78961 0.78041 0.79418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.81 4.98 29.85 0.15 1.96 16 10 C -0.42 -15.47 5.86 71.98 0.42 -15.05 16 11 S 1.28 39.74 13.14 -56.49 -0.74 39.00 16 12 O -0.89 -40.12 18.14 -148.98 -2.70 -42.82 16 13 C -0.41 -9.10 6.30 71.24 0.45 -8.65 16 14 C 0.23 5.78 6.06 42.45 0.26 6.04 16 15 C -0.32 -7.53 9.69 22.66 0.22 -7.31 16 16 C 0.50 12.94 7.36 84.62 0.62 13.56 16 17 O -0.56 -16.76 16.69 -5.64 -0.09 -16.85 16 18 N -0.43 -9.23 2.76 -478.53 -1.32 -10.55 16 19 C 0.09 1.50 9.84 83.33 0.82 2.32 16 20 C -0.07 -0.81 6.28 22.09 0.14 -0.67 16 21 Cl -0.01 -0.10 28.94 -2.72 -0.08 -0.18 16 22 C -0.01 -0.07 9.87 22.30 0.22 0.15 16 23 C -0.12 -1.74 9.96 22.41 0.22 -1.52 16 24 C 0.38 8.45 7.33 133.98 0.98 9.43 16 25 N -0.56 -15.61 10.25 -181.00 -1.86 -17.46 16 26 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 28 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 29 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.18 2.34 7.96 -2.39 -0.02 2.32 16 32 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.19 3.32 8.02 -2.91 -0.02 3.29 16 34 H 0.19 2.85 7.34 -2.92 -0.02 2.83 16 35 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 36 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -86.95 348.35 1.83 -85.12 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.12 Total: 4.04 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 5.20 Total: -29.49 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.89 Total: -84.68 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -2.80 Total: -59.68 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 39.74 SS G_CDS: -0.74 Total: 39.00 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -86.95 1.83 -85.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190788949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.072 kcal (2) G-P(sol) polarization free energy of solvation -86.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds