Wall clock time and date at job start Sat Apr 11 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28444 * 125.18181 * 2 1 4 4 C 1.30911 * 110.92582 * 179.97438 * 3 2 1 5 5 Br 1.89099 * 126.08026 * 179.97438 * 4 3 2 6 6 C 1.39756 * 107.83725 * 0.02562 * 4 3 2 7 7 C 1.36596 * 125.17808 * 179.97438 * 2 1 3 8 8 C 1.47161 * 126.88128 * 0.04615 * 7 2 1 9 9 O 1.21628 * 119.99590 * 350.71096 * 8 7 2 10 10 N 1.34768 * 120.00252 * 170.71270 * 8 7 2 11 11 C 1.46508 * 120.00055 * 180.91001 * 10 8 7 12 12 C 1.50700 * 109.46957 * 90.00002 * 11 10 8 13 13 H 1.08001 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99677 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99879 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00295 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47210 * 90.00031 * 16 14 12 18 18 H 1.48502 * 109.47188 * 210.00101 * 16 14 12 19 19 H 1.48507 * 109.46737 * 329.99931 * 16 14 12 20 20 C 1.46500 * 120.00423 * 0.90876 * 10 8 7 21 21 C 1.53006 * 109.46761 * 82.85879 * 20 10 8 22 22 C 1.47201 * 109.46663 * 184.92849 * 21 20 10 23 23 N 6.23436 * 157.89666 * 163.56200 * 2 1 3 24 24 H 1.08998 * 109.46862 * 95.13983 * 1 2 3 25 25 H 1.09002 * 109.47015 * 215.13635 * 1 2 3 26 26 H 1.08999 * 109.47184 * 335.14025 * 1 2 3 27 27 H 1.07999 * 127.32461 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47189 * 209.99713 * 11 10 8 29 29 H 1.08994 * 109.46730 * 329.99985 * 11 10 8 30 30 H 0.97001 * 120.00480 * 179.97438 * 15 14 12 31 31 H 1.08993 * 109.47514 * 202.86098 * 20 10 8 32 32 H 1.09002 * 109.46755 * 322.86742 * 20 10 8 33 33 H 1.08997 * 109.47435 * 304.93039 * 21 20 10 34 34 H 1.08999 * 109.46778 * 64.93136 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0498 0.0000 4 6 3.4738 0.7274 0.0005 5 35 4.9295 1.9344 0.0001 6 6 3.5611 -0.6674 0.0003 7 6 2.2519 -1.1165 0.0005 8 6 1.7986 -2.5165 0.0002 9 8 0.6222 -2.7748 0.1694 10 7 2.6870 -3.5125 -0.1876 11 6 2.2327 -4.9052 -0.2078 12 6 1.8763 -5.2969 -1.6187 13 1 1.9777 -4.5800 -2.4202 14 6 1.4199 -6.5701 -1.8863 15 7 1.1094 -6.9121 -3.1176 16 14 1.2440 -7.8098 -0.5001 17 1 -0.1188 -7.7116 0.0818 18 1 1.4579 -9.1800 -1.0312 19 1 2.2530 -7.5233 0.5512 20 6 4.1070 -3.2025 -0.3716 21 6 4.7672 -3.0061 0.9947 22 6 6.1635 -2.5793 0.8079 23 7 7.2412 -2.2500 0.6638 24 1 -0.3633 -0.0921 -1.0235 25 1 -0.3633 -0.8404 0.5915 26 1 -0.3633 0.9324 0.4320 27 1 4.4592 -1.2673 0.0003 28 1 3.0293 -5.5526 0.1588 29 1 1.3559 -5.0106 0.4310 30 1 0.7887 -7.8080 -3.3060 31 1 4.5936 -4.0252 -0.8954 32 1 4.2064 -2.2890 -0.9578 33 1 4.2256 -2.2430 1.5536 34 1 4.7451 -3.9455 1.5472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192327473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:48 Heat of formation + Delta-G solvation = 107.105168 kcal Electronic energy + Delta-G solvation = -21496.501393 eV Core-core repulsion = 18093.425415 eV Total energy + Delta-G solvation = -3403.075978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.79323 -39.38110 -37.24726 -35.70799 -33.68883 -33.09789 -31.61802 -31.05088 -30.70994 -28.09263 -26.71922 -24.53159 -23.56971 -22.26532 -20.86067 -19.21613 -17.90652 -17.12517 -16.93701 -16.70459 -16.41310 -15.46331 -15.25670 -14.64596 -14.23149 -13.89403 -13.73944 -13.53803 -13.18407 -13.13169 -12.72957 -12.61340 -12.38089 -12.18322 -11.99463 -11.73543 -11.33974 -11.20452 -11.15498 -10.94878 -10.65852 -10.38369 -10.31314 -9.76705 -9.56482 -9.20840 -8.98257 -8.71626 -8.14550 -6.20730 -4.22062 1.14939 1.23349 2.13947 2.42527 2.64170 2.71056 3.19761 3.24599 3.27217 3.33434 3.44125 3.95445 4.27648 4.40018 4.57047 4.86372 4.92250 5.04398 5.11392 5.15613 5.19840 5.26109 5.30655 5.54957 5.63146 5.92138 5.96985 6.40964 6.46599 6.69428 6.93970 7.42039 7.46894 7.66477 7.80425 8.26956 8.48134 8.82362 9.37208 10.92194 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003963 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.867067 B = 7063.419306 C = 8218.251420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.244 5.244 3 N -0.250 5.250 4 C 0.017 3.983 5 Br 0.027 6.973 6 C -0.193 4.193 7 C -0.009 4.009 8 C 0.583 3.417 9 O -0.527 6.527 10 N -0.568 5.568 11 C 0.216 3.784 12 C -0.537 4.537 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.892 5.892 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.092 3.908 21 C -0.063 4.063 22 C 0.207 3.793 23 N -0.426 5.426 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.186 0.814 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 14.629 9.002 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.033 5.033 3 N -0.087 5.087 4 C -0.218 4.218 5 Br 0.108 6.892 6 C -0.222 4.222 7 C -0.138 4.138 8 C 0.368 3.632 9 O -0.404 6.404 10 N -0.297 5.297 11 C 0.097 3.903 12 C -0.575 4.575 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.701 3.299 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.033 4.033 21 C -0.104 4.104 22 C -0.111 4.111 23 N -0.103 5.103 24 H 0.109 0.891 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.203 0.797 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.604 16.121 8.754 19.181 hybrid contribution -0.377 -1.701 0.516 1.817 sum 5.227 14.420 9.270 17.921 Atomic orbital electron populations 1.22503 0.71495 1.06031 1.05676 1.45677 1.08157 1.01445 1.47982 1.73215 1.02450 1.13899 1.19086 1.23391 0.91788 0.93403 1.13187 1.96719 1.34560 1.59798 1.98080 1.23104 0.97455 0.92998 1.08682 1.21763 0.90410 0.90706 1.10954 1.16737 0.85864 0.82228 0.78344 1.90783 1.16062 1.83585 1.49956 1.47588 1.05492 1.08016 1.68640 1.19880 0.96176 0.75156 0.99122 1.21262 1.45325 0.98706 0.92238 0.90497 1.24836 0.94395 0.98012 0.95491 1.69882 1.43960 1.20215 1.18944 0.86885 0.79401 0.81032 0.82562 1.19837 1.20998 1.18866 1.22035 0.82253 1.04909 0.94147 1.20092 0.83868 1.04926 1.01513 1.28875 0.94804 0.93579 0.93836 1.81235 1.12232 1.08942 1.07860 0.89131 0.86482 0.88602 0.79696 0.94257 0.93808 0.92362 0.87533 0.88531 0.86789 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.78 59.85 0.65 1.58 16 2 N -0.24 -3.48 3.75 -63.88 -0.24 -3.72 16 3 N -0.25 -3.63 11.90 31.88 0.38 -3.25 16 4 C 0.02 0.23 7.72 -17.38 -0.13 0.10 16 5 Br 0.03 0.32 34.11 -68.01 -2.32 -2.00 16 6 C -0.19 -2.58 7.45 -38.95 -0.29 -2.87 16 7 C -0.01 -0.13 6.71 -82.06 -0.55 -0.68 16 8 C 0.58 10.24 7.58 -12.64 -0.10 10.15 16 9 O -0.53 -10.73 14.36 5.25 0.08 -10.66 16 10 N -0.57 -9.68 2.47 -176.42 -0.44 -10.12 16 11 C 0.22 4.46 4.20 -5.19 -0.02 4.44 16 12 C -0.54 -13.84 9.94 -34.44 -0.34 -14.18 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 16 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 20 C 0.09 1.19 4.92 -4.04 -0.02 1.17 16 21 C -0.06 -0.62 5.00 -29.51 -0.15 -0.76 16 22 C 0.21 2.35 14.38 -20.76 -0.30 2.05 16 23 N -0.43 -5.85 18.54 42.15 0.78 -5.07 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.12 1.40 6.44 -51.93 -0.33 1.07 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.19 2.17 2.56 -52.49 -0.13 2.04 16 28 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 29 H 0.04 0.96 6.83 -51.93 -0.35 0.60 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.11 1.37 8.02 -51.93 -0.42 0.96 16 32 H 0.10 1.21 4.82 -51.93 -0.25 0.96 16 33 H 0.11 1.05 6.35 -51.93 -0.33 0.72 16 34 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -31.86 314.42 -5.32 -37.18 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.05 Total: 0.11 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.35 Total: 2.92 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 1.26 Total: -47.22 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -2.32 Total: -2.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.86 -5.32 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192327473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.283 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds