Wall clock time and date at job start Sat Apr 11 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28444 * 125.18181 * 2 1 4 4 C 1.30911 * 110.92582 * 179.97438 * 3 2 1 5 5 Br 1.89099 * 126.08026 * 179.97438 * 4 3 2 6 6 C 1.39756 * 107.83725 * 0.02562 * 4 3 2 7 7 C 1.36596 * 125.17808 * 179.97438 * 2 1 3 8 8 C 1.47161 * 126.88128 * 0.04615 * 7 2 1 9 9 O 1.21628 * 119.99590 * 350.71096 * 8 7 2 10 10 N 1.34768 * 120.00252 * 170.71270 * 8 7 2 11 11 C 1.46508 * 120.00055 * 180.91001 * 10 8 7 12 12 C 1.50700 * 109.46957 * 90.00002 * 11 10 8 13 13 H 1.08001 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99677 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99879 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00295 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47210 * 90.00031 * 16 14 12 18 18 H 1.48502 * 109.47188 * 210.00101 * 16 14 12 19 19 H 1.48507 * 109.46737 * 329.99931 * 16 14 12 20 20 C 1.46500 * 120.00423 * 0.90876 * 10 8 7 21 21 C 1.53006 * 109.46761 * 82.85879 * 20 10 8 22 22 C 1.47201 * 109.46663 * 184.92849 * 21 20 10 23 23 N 6.23436 * 157.89666 * 163.56200 * 2 1 3 24 24 H 1.08998 * 109.46862 * 95.13983 * 1 2 3 25 25 H 1.09002 * 109.47015 * 215.13635 * 1 2 3 26 26 H 1.08999 * 109.47184 * 335.14025 * 1 2 3 27 27 H 1.07999 * 127.32461 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47189 * 209.99713 * 11 10 8 29 29 H 1.08994 * 109.46730 * 329.99985 * 11 10 8 30 30 H 0.97001 * 120.00480 * 179.97438 * 15 14 12 31 31 H 1.08993 * 109.47514 * 202.86098 * 20 10 8 32 32 H 1.09002 * 109.46755 * 322.86742 * 20 10 8 33 33 H 1.08997 * 109.47435 * 304.93039 * 21 20 10 34 34 H 1.08999 * 109.46778 * 64.93136 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0498 0.0000 4 6 3.4738 0.7274 0.0005 5 35 4.9295 1.9344 0.0001 6 6 3.5611 -0.6674 0.0003 7 6 2.2519 -1.1165 0.0005 8 6 1.7986 -2.5165 0.0002 9 8 0.6222 -2.7748 0.1694 10 7 2.6870 -3.5125 -0.1876 11 6 2.2327 -4.9052 -0.2078 12 6 1.8763 -5.2969 -1.6187 13 1 1.9777 -4.5800 -2.4202 14 6 1.4199 -6.5701 -1.8863 15 7 1.1094 -6.9121 -3.1176 16 14 1.2440 -7.8098 -0.5001 17 1 -0.1188 -7.7116 0.0818 18 1 1.4579 -9.1800 -1.0312 19 1 2.2530 -7.5233 0.5512 20 6 4.1070 -3.2025 -0.3716 21 6 4.7672 -3.0061 0.9947 22 6 6.1635 -2.5793 0.8079 23 7 7.2412 -2.2500 0.6638 24 1 -0.3633 -0.0921 -1.0235 25 1 -0.3633 -0.8404 0.5915 26 1 -0.3633 0.9324 0.4320 27 1 4.4592 -1.2673 0.0003 28 1 3.0293 -5.5526 0.1588 29 1 1.3559 -5.0106 0.4310 30 1 0.7887 -7.8080 -3.3060 31 1 4.5936 -4.0252 -0.8954 32 1 4.2064 -2.2890 -0.9578 33 1 4.2256 -2.2430 1.5536 34 1 4.7451 -3.9455 1.5472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192327473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:47 Heat of formation + Delta-G solvation = 86.075964 kcal Electronic energy + Delta-G solvation = -21497.413288 eV Core-core repulsion = 18093.425415 eV Total energy + Delta-G solvation = -3403.987873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.90404 -40.71791 -38.34980 -36.92883 -35.03644 -34.62063 -33.06524 -32.06383 -31.79655 -29.76136 -27.72405 -25.67089 -25.15184 -23.45750 -22.19596 -20.41815 -19.19934 -18.63715 -18.21976 -17.89767 -17.51033 -16.95610 -16.37456 -16.08679 -15.58493 -15.26021 -14.80468 -14.58432 -14.52736 -14.27175 -14.07858 -13.77494 -13.61967 -13.37647 -13.24205 -13.01168 -12.71825 -12.42284 -12.31883 -12.15674 -11.99400 -11.96325 -11.67191 -11.38228 -11.03212 -10.74333 -10.36260 -10.03628 -9.60291 -8.25160 -6.31298 0.05072 0.12275 1.05012 1.30813 1.44959 1.47512 1.55276 1.69008 1.80963 2.04374 2.22781 2.39887 2.93769 3.11685 3.31569 3.48356 3.89140 3.97160 3.98021 4.13638 4.27081 4.31387 4.43378 4.64321 4.71655 4.84840 4.90962 4.96165 5.04327 5.38578 5.46302 5.52881 6.26205 6.37932 6.57872 6.63099 6.72512 7.06229 7.33685 8.91514 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003963 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.867067 B = 7063.419306 C = 8218.251420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.246 5.246 3 N -0.254 5.254 4 C 0.004 3.996 5 Br 0.046 6.954 6 C -0.176 4.176 7 C -0.025 4.025 8 C 0.582 3.418 9 O -0.563 6.563 10 N -0.569 5.569 11 C 0.223 3.777 12 C -0.537 4.537 13 H 0.029 0.971 14 C 0.012 3.988 15 N -0.949 5.949 16 Si 0.943 3.057 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.222 1.222 20 C 0.087 3.913 21 C -0.051 4.051 22 C 0.233 3.767 23 N -0.465 5.465 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.201 0.799 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 14.905 11.253 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.035 5.035 3 N -0.091 5.091 4 C -0.230 4.230 5 Br 0.127 6.873 6 C -0.205 4.205 7 C -0.154 4.154 8 C 0.369 3.631 9 O -0.442 6.442 10 N -0.298 5.298 11 C 0.102 3.898 12 C -0.575 4.575 13 H 0.048 0.952 14 C -0.186 4.186 15 N -0.589 5.589 16 Si 0.766 3.234 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.145 1.145 20 C -0.037 4.037 21 C -0.092 4.092 22 C -0.085 4.085 23 N -0.143 5.143 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.143 0.857 27 H 0.217 0.783 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.764 16.434 11.022 20.912 hybrid contribution -0.730 -1.655 -0.286 1.831 sum 6.034 14.779 10.736 19.238 Atomic orbital electron populations 1.22674 0.70280 1.07221 1.05929 1.45951 1.08992 1.01110 1.47476 1.73219 1.02884 1.13942 1.19060 1.23697 0.92158 0.94045 1.13062 1.96740 1.33330 1.59164 1.98024 1.23234 0.97202 0.92997 1.07106 1.21452 0.91267 0.89776 1.12940 1.17014 0.85397 0.83210 0.77507 1.90760 1.17551 1.84310 1.51596 1.47495 1.07129 1.06748 1.68442 1.19634 0.97082 0.77571 0.95496 1.21554 1.44435 0.97702 0.93821 0.95219 1.25823 0.94092 1.00532 0.98110 1.70060 1.46126 1.20880 1.21810 0.85792 0.80139 0.77599 0.79909 1.20233 1.21298 1.14459 1.22210 0.80141 1.05154 0.96203 1.20051 0.82547 1.06830 0.99787 1.28930 0.94599 0.92360 0.92634 1.81279 1.13544 1.10434 1.09012 0.88948 0.87368 0.85732 0.78284 0.90977 0.94483 0.92491 0.87347 0.88315 0.85544 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.70 10.78 127.77 1.38 3.07 16 2 N -0.25 -6.74 3.75 -356.03 -1.33 -8.08 16 3 N -0.25 -6.96 11.90 -53.05 -0.63 -7.60 16 4 C 0.00 0.11 7.72 85.20 0.66 0.76 16 5 Br 0.05 0.99 34.11 -20.37 -0.69 0.30 16 6 C -0.18 -4.37 7.45 22.68 0.17 -4.20 16 7 C -0.03 -0.73 6.71 40.79 0.27 -0.46 16 8 C 0.58 20.08 7.58 86.59 0.66 20.74 16 9 O -0.56 -23.02 14.36 -4.12 -0.06 -23.08 16 10 N -0.57 -18.62 2.47 -830.33 -2.05 -20.68 16 11 C 0.22 8.83 4.20 85.63 0.36 9.19 16 12 C -0.54 -27.98 9.94 25.60 0.25 -27.72 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 14 C 0.01 0.67 5.47 84.65 0.46 1.13 16 15 N -0.95 -56.65 13.96 21.45 0.30 -56.35 16 16 Si 0.94 39.56 27.47 68.60 1.88 41.45 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.22 -7.77 6.54 99.48 0.65 -7.12 16 20 C 0.09 2.05 4.92 86.38 0.43 2.48 16 21 C -0.05 -0.84 5.00 28.79 0.14 -0.69 16 22 C 0.23 4.61 14.38 89.44 1.29 5.90 16 23 N -0.47 -11.82 18.54 20.01 0.37 -11.45 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.11 2.59 6.44 -2.39 -0.02 2.58 16 26 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.20 4.20 2.56 -2.91 -0.01 4.19 16 28 H 0.07 2.43 7.13 -2.39 -0.02 2.41 16 29 H 0.04 1.55 6.83 -2.39 -0.02 1.53 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.11 2.56 8.02 -2.39 -0.02 2.54 16 32 H 0.10 2.30 4.82 -2.39 -0.01 2.29 16 33 H 0.13 1.87 6.35 -2.39 -0.02 1.86 16 34 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.92 314.42 4.96 -65.97 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.11 Total: 9.31 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.07 Total: 10.21 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.35 Total: -104.15 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.06 Total: -23.08 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.88 Total: 41.45 kcal Atomic # 35 Polarization: 0.99 SS G_CDS: -0.69 Total: 0.30 kcal Total: -70.92 4.96 -65.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192327473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.043 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds