Wall clock time and date at job start Sat Apr 11 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34706 * 116.99626 * 2 1 4 4 O 1.21471 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.47739 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.39552 * 120.12097 * 179.97438 * 5 3 2 7 7 C 1.38580 * 119.77762 * 179.97438 * 6 5 3 8 8 N 1.39955 * 119.99871 * 180.02562 * 7 6 5 9 9 C 1.34766 * 120.00197 * 324.91541 * 8 7 6 10 10 O 1.21293 * 120.00051 * 4.61786 * 9 8 7 11 11 C 1.50698 * 120.00183 * 184.61961 * 9 8 7 12 12 S 1.81001 * 109.47386 * 179.97438 * 11 9 8 13 13 C 1.76197 * 100.00525 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99384 * 359.97438 * 13 12 11 15 15 C 1.38790 * 120.00528 * 179.97438 * 13 12 11 16 16 N 1.31637 * 119.99873 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00223 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46969 * 90.00241 * 17 15 13 19 19 H 1.48502 * 109.47156 * 210.00016 * 17 15 13 20 20 H 1.48498 * 109.46987 * 330.00215 * 17 15 13 21 21 C 1.38999 * 120.00543 * 0.02562 * 7 6 5 22 22 C 1.38226 * 120.23253 * 359.97438 * 21 7 6 23 23 N 1.48020 * 119.88607 * 179.97438 * 22 21 7 24 24 O 1.21807 * 119.99566 * 0.02562 * 23 22 21 25 25 O 1.21791 * 120.00226 * 179.97438 * 23 22 21 26 26 C 1.38005 * 120.22721 * 0.02562 * 22 21 7 27 27 H 1.08993 * 109.47547 * 60.00047 * 1 2 3 28 28 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46953 * 299.99552 * 1 2 3 30 30 H 1.07997 * 120.10766 * 0.25713 * 6 5 3 31 31 H 0.96998 * 119.99605 * 144.90965 * 8 7 6 32 32 H 1.08999 * 109.47307 * 299.99411 * 11 9 8 33 33 H 1.09004 * 109.47316 * 59.99703 * 11 9 8 34 34 H 0.96996 * 120.00206 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.88629 * 179.97438 * 21 7 6 36 36 H 1.08003 * 120.00108 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.1749 2.5198 -0.0011 7 6 5.5592 2.5842 -0.0011 8 7 6.2019 3.8274 -0.0011 9 6 5.6630 4.8646 -0.6719 10 8 4.5804 4.7450 -1.2055 11 6 6.4055 6.1731 -0.7592 12 16 5.4297 7.3578 -1.7185 13 6 6.5026 8.7543 -1.6628 14 1 7.4438 8.6915 -1.1366 15 6 6.1384 9.9351 -2.2949 16 7 4.9911 10.0118 -2.9357 17 14 7.2757 11.4158 -2.2351 18 1 8.2046 11.3735 -3.3928 19 1 6.4695 12.6617 -2.2925 20 1 8.0568 11.3893 -0.9724 21 6 6.3095 1.4141 -0.0011 22 6 5.6798 0.1836 -0.0006 23 7 6.4862 -1.0577 -0.0011 24 8 7.7026 -0.9935 -0.0016 25 8 5.9336 -2.1430 -0.0002 26 6 4.3018 0.1083 -0.0006 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.5903 3.4279 0.0031 31 1 7.0352 3.9425 0.4818 32 1 6.5695 6.5654 0.2445 33 1 7.3664 6.0137 -1.2485 34 1 4.7367 10.8368 -3.3778 35 1 7.3882 1.4664 -0.0015 36 1 3.8136 -0.8551 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265575114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:13 Heat of formation + Delta-G solvation = -85.902366 kcal Electronic energy + Delta-G solvation = -25634.795377 eV Core-core repulsion = 21407.528605 eV Total energy + Delta-G solvation = -4227.266772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52688 -41.23361 -40.43734 -38.74674 -36.87205 -36.84368 -35.22168 -32.62458 -32.55026 -31.41029 -28.99484 -28.17555 -26.93787 -25.62931 -24.83151 -23.24668 -21.65828 -21.03387 -19.45262 -19.06625 -18.26390 -17.89012 -17.84200 -17.32666 -16.95523 -16.78005 -16.62095 -16.47477 -15.85779 -14.96314 -14.91153 -14.32782 -14.12805 -14.05857 -13.69711 -13.34728 -13.00893 -12.85093 -12.72127 -12.48161 -12.40426 -11.86264 -11.61704 -11.42135 -11.19727 -11.17843 -11.14140 -11.09084 -10.97475 -10.87890 -10.18612 -9.97112 -9.83491 -9.18483 -8.91876 -8.43731 -6.67317 -6.33906 -4.07086 -0.56528 -0.04386 0.91796 0.96223 1.88938 2.09960 2.46178 2.55379 2.97548 3.14003 3.15056 3.22539 3.34959 3.84310 4.06858 4.12215 4.19746 4.32369 4.39607 4.54717 4.75812 4.81729 4.85553 5.01928 5.05971 5.16841 5.32000 5.35882 5.43215 5.58331 5.62776 5.87181 5.88033 5.98736 6.19065 6.98870 7.26245 7.32240 7.47804 7.96715 8.22694 9.11665 10.73446 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.002539 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.997956 B =11025.580455 C =12873.172798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.480 6.480 5 C -0.101 4.101 6 C -0.013 4.013 7 C 0.159 3.841 8 N -0.677 5.677 9 C 0.533 3.467 10 O -0.488 6.488 11 C -0.154 4.154 12 S -0.054 6.054 13 C -0.539 4.539 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.866 5.866 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.272 1.272 21 C -0.059 4.059 22 C -0.036 4.036 23 N 0.031 4.969 24 O -0.155 6.155 25 O -0.153 6.153 26 C -0.023 4.023 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.178 0.822 31 H 0.419 0.581 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.270 0.730 35 H 0.165 0.835 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -20.948 8.893 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.354 3.646 4 O -0.367 6.367 5 C -0.104 4.104 6 C -0.033 4.033 7 C 0.062 3.938 8 N -0.325 5.325 9 C 0.322 3.678 10 O -0.359 6.359 11 C -0.304 4.304 12 S 0.173 5.827 13 C -0.687 4.687 14 H 0.093 0.907 15 C -0.135 4.135 16 N -0.501 5.501 17 Si 0.747 3.253 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.081 4.081 22 C -0.119 4.119 23 N 0.552 4.448 24 O -0.372 6.372 25 O -0.370 6.370 26 C -0.043 4.043 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.195 0.805 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.182 0.818 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.843 -20.018 7.862 21.847 hybrid contribution 2.457 0.879 0.805 2.731 sum -1.386 -19.139 8.667 21.055 Atomic orbital electron populations 1.23374 0.75026 1.04146 1.03126 1.86515 1.24287 1.31921 1.84308 1.20665 0.88172 0.82039 0.73714 1.90946 1.66053 1.35752 1.43917 1.18778 0.90288 0.92899 1.08439 1.22018 0.93604 0.99018 0.88688 1.17235 0.90870 0.85500 1.00171 1.43750 1.27886 1.07636 1.53218 1.20780 0.86124 0.84629 0.76307 1.90754 1.19972 1.81836 1.43370 1.23558 1.04372 0.95582 1.06920 1.85497 1.26043 1.04951 1.66246 1.22830 1.07159 0.98112 1.40586 0.90709 1.25006 0.95675 0.98471 0.94363 1.70004 1.20504 1.27728 1.31867 0.86134 0.79896 0.80594 0.78694 1.20180 1.20675 1.19628 1.20936 1.02538 0.88745 0.95918 1.20551 0.91238 0.84576 1.15542 1.43451 1.01350 1.02378 0.97608 1.94563 0.95421 1.93914 1.53255 1.94559 1.74371 1.14906 1.53127 1.21213 0.90576 1.00748 0.91741 0.91358 0.87568 0.91478 0.80511 0.74358 0.88323 0.88311 0.92006 0.81783 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.32 9.81 -40.51 -0.40 -3.72 16 3 C 0.51 6.00 7.90 34.61 0.27 6.27 16 4 O -0.48 -7.13 16.13 -19.24 -0.31 -7.44 16 5 C -0.10 -1.10 5.87 -105.01 -0.62 -1.72 16 6 C -0.01 -0.16 8.23 -38.97 -0.32 -0.48 16 7 C 0.16 1.69 6.29 -83.74 -0.53 1.16 16 8 N -0.68 -7.15 5.34 -9.90 -0.05 -7.20 16 9 C 0.53 8.33 7.69 -10.99 -0.08 8.24 16 10 O -0.49 -9.51 13.30 5.55 0.07 -9.43 16 11 C -0.15 -2.67 6.16 36.00 0.22 -2.45 16 12 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 13 C -0.54 -14.49 9.50 30.94 0.29 -14.19 16 14 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 15 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -25.21 13.22 55.49 0.73 -24.47 16 17 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 C -0.06 -0.53 9.47 -39.30 -0.37 -0.90 16 22 C -0.04 -0.35 6.84 -80.04 -0.55 -0.90 16 23 N 0.03 0.35 4.45 33.92 0.15 0.50 16 24 O -0.16 -1.84 18.43 -29.46 -0.54 -2.38 16 25 O -0.15 -1.81 18.43 -29.46 -0.54 -2.35 16 26 C -0.02 -0.21 9.12 -39.15 -0.36 -0.57 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.18 2.62 5.82 -52.49 -0.31 2.32 16 31 H 0.42 2.84 8.82 -40.82 -0.36 2.48 16 32 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 33 H 0.10 1.54 8.14 -51.91 -0.42 1.12 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.16 1.13 7.59 -52.49 -0.40 0.73 16 36 H 0.17 1.33 7.14 -52.48 -0.37 0.95 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -34.26 349.90 -7.01 -41.28 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.10 Total: 0.22 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.06 Total: -2.27 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.83 Total: -31.17 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.72 Total: -25.32 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.26 -7.01 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265575114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.626 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds