Wall clock time and date at job start Sat Apr 11 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34706 * 116.99626 * 2 1 4 4 O 1.21471 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.47739 * 120.00081 * 180.02562 * 3 2 1 6 6 C 1.39552 * 120.12097 * 179.97438 * 5 3 2 7 7 C 1.38580 * 119.77762 * 179.97438 * 6 5 3 8 8 N 1.39955 * 119.99871 * 180.02562 * 7 6 5 9 9 C 1.34766 * 120.00197 * 324.91541 * 8 7 6 10 10 O 1.21293 * 120.00051 * 4.61786 * 9 8 7 11 11 C 1.50698 * 120.00183 * 184.61961 * 9 8 7 12 12 S 1.81001 * 109.47386 * 179.97438 * 11 9 8 13 13 C 1.76197 * 100.00525 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99384 * 359.97438 * 13 12 11 15 15 C 1.38790 * 120.00528 * 179.97438 * 13 12 11 16 16 N 1.31637 * 119.99873 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00223 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46969 * 90.00241 * 17 15 13 19 19 H 1.48502 * 109.47156 * 210.00016 * 17 15 13 20 20 H 1.48498 * 109.46987 * 330.00215 * 17 15 13 21 21 C 1.38999 * 120.00543 * 0.02562 * 7 6 5 22 22 C 1.38226 * 120.23253 * 359.97438 * 21 7 6 23 23 N 1.48020 * 119.88607 * 179.97438 * 22 21 7 24 24 O 1.21807 * 119.99566 * 0.02562 * 23 22 21 25 25 O 1.21791 * 120.00226 * 179.97438 * 23 22 21 26 26 C 1.38005 * 120.22721 * 0.02562 * 22 21 7 27 27 H 1.08993 * 109.47547 * 60.00047 * 1 2 3 28 28 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46953 * 299.99552 * 1 2 3 30 30 H 1.07997 * 120.10766 * 0.25713 * 6 5 3 31 31 H 0.96998 * 119.99605 * 144.90965 * 8 7 6 32 32 H 1.08999 * 109.47307 * 299.99411 * 11 9 8 33 33 H 1.09004 * 109.47316 * 59.99703 * 11 9 8 34 34 H 0.96996 * 120.00206 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.88629 * 179.97438 * 21 7 6 36 36 H 1.08003 * 120.00108 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.1749 2.5198 -0.0011 7 6 5.5592 2.5842 -0.0011 8 7 6.2019 3.8274 -0.0011 9 6 5.6630 4.8646 -0.6719 10 8 4.5804 4.7450 -1.2055 11 6 6.4055 6.1731 -0.7592 12 16 5.4297 7.3578 -1.7185 13 6 6.5026 8.7543 -1.6628 14 1 7.4438 8.6915 -1.1366 15 6 6.1384 9.9351 -2.2949 16 7 4.9911 10.0118 -2.9357 17 14 7.2757 11.4158 -2.2351 18 1 8.2046 11.3735 -3.3928 19 1 6.4695 12.6617 -2.2925 20 1 8.0568 11.3893 -0.9724 21 6 6.3095 1.4141 -0.0011 22 6 5.6798 0.1836 -0.0006 23 7 6.4862 -1.0577 -0.0011 24 8 7.7026 -0.9935 -0.0016 25 8 5.9336 -2.1430 -0.0002 26 6 4.3018 0.1083 -0.0006 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.5903 3.4279 0.0031 31 1 7.0352 3.9425 0.4818 32 1 6.5695 6.5654 0.2445 33 1 7.3664 6.0137 -1.2485 34 1 4.7367 10.8368 -3.3778 35 1 7.3882 1.4664 -0.0015 36 1 3.8136 -0.8551 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265575114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:11 Heat of formation + Delta-G solvation = -107.909267 kcal Electronic energy + Delta-G solvation = -25635.749668 eV Core-core repulsion = 21407.528605 eV Total energy + Delta-G solvation = -4228.221063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.39530 -42.17520 -41.43593 -39.77311 -37.75617 -37.73066 -36.29084 -34.59588 -33.49293 -32.50369 -30.18856 -28.84988 -27.81828 -27.67499 -25.65444 -24.22494 -22.55136 -22.08863 -20.37222 -20.09333 -19.80432 -18.84930 -18.70187 -18.47850 -17.84856 -17.73976 -17.58594 -17.41238 -16.89498 -16.88629 -16.05412 -16.03142 -15.11011 -14.90904 -14.84590 -14.53823 -14.23449 -13.91647 -13.67271 -13.64392 -13.18067 -13.11556 -12.90590 -12.75733 -12.64797 -12.50888 -12.32078 -12.09979 -11.94858 -11.92867 -11.76908 -11.26499 -11.15359 -10.91675 -10.30742 -9.84323 -8.69103 -8.36382 -6.14494 -1.43883 -0.88437 0.00929 0.09506 0.96638 1.14524 1.30390 1.38019 1.42345 1.45127 1.54580 1.88944 2.09693 2.25021 2.98859 3.04833 3.17238 3.33465 3.37653 3.46669 3.51893 3.74707 3.90687 4.23286 4.25312 4.28122 4.30073 4.46626 4.51967 4.55467 4.65442 4.71432 5.06872 5.07775 5.25077 5.41820 6.07828 6.18770 6.39122 6.41047 6.85095 7.05979 8.72538 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.002539 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.997956 B =11025.580455 C =12873.172798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.514 3.486 4 O -0.521 6.521 5 C -0.107 4.107 6 C -0.024 4.024 7 C 0.151 3.849 8 N -0.651 5.651 9 C 0.539 3.461 10 O -0.534 6.534 11 C -0.129 4.129 12 S -0.150 6.150 13 C -0.544 4.544 14 H 0.088 0.912 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.256 1.256 21 C -0.031 4.031 22 C -0.040 4.040 23 N 0.033 4.967 24 O -0.158 6.158 25 O -0.163 6.163 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.143 0.857 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.440 0.560 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.194 0.806 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 -22.442 10.072 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.359 3.641 4 O -0.411 6.411 5 C -0.110 4.110 6 C -0.045 4.045 7 C 0.055 3.945 8 N -0.300 5.300 9 C 0.327 3.673 10 O -0.409 6.409 11 C -0.280 4.280 12 S 0.078 5.922 13 C -0.691 4.691 14 H 0.106 0.894 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.180 1.180 21 C -0.052 4.052 22 C -0.123 4.123 23 N 0.553 4.447 24 O -0.375 6.375 25 O -0.378 6.378 26 C -0.022 4.022 27 H 0.081 0.919 28 H 0.161 0.839 29 H 0.085 0.915 30 H 0.165 0.835 31 H 0.282 0.718 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.211 0.789 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.415 -21.585 9.081 23.460 hybrid contribution 1.689 1.133 0.505 2.096 sum 0.274 -20.452 9.587 22.589 Atomic orbital electron populations 1.23706 0.73424 1.06452 1.02900 1.86515 1.25839 1.30432 1.83571 1.20862 0.88531 0.82110 0.72630 1.90931 1.66934 1.37158 1.46095 1.18650 0.90000 0.92938 1.09373 1.21850 0.94454 0.98539 0.89680 1.17114 0.90228 0.85745 1.01432 1.43245 1.28180 1.06535 1.52045 1.20417 0.85354 0.85080 0.76430 1.90766 1.21868 1.82575 1.45673 1.23363 1.03636 0.94238 1.06731 1.85688 1.29630 1.08023 1.68902 1.23200 1.07364 0.98423 1.40156 0.89441 1.26109 0.97244 1.01934 0.93888 1.70177 1.22790 1.28575 1.33307 0.84971 0.77627 0.76153 0.79364 1.19413 1.20660 1.17989 1.21075 1.03709 0.87434 0.92989 1.20561 0.91247 0.84418 1.16108 1.43533 1.01325 1.02534 0.97348 1.94563 0.95656 1.93985 1.53282 1.94568 1.74354 1.15289 1.53579 1.21299 0.90447 1.00756 0.89676 0.91941 0.83938 0.91479 0.83528 0.71776 0.85878 0.85855 0.92050 0.78910 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.23 9.81 -56.16 -0.55 -6.78 16 3 C 0.51 12.23 7.90 70.33 0.56 12.78 16 4 O -0.52 -16.35 16.13 19.93 0.32 -16.02 16 5 C -0.11 -2.27 5.87 -20.11 -0.12 -2.39 16 6 C -0.02 -0.60 8.23 22.67 0.19 -0.41 16 7 C 0.15 2.93 6.29 38.11 0.24 3.17 16 8 N -0.65 -12.30 5.34 -303.61 -1.62 -13.92 16 9 C 0.54 16.44 7.69 87.66 0.67 17.12 16 10 O -0.53 -21.47 13.30 -3.07 -0.04 -21.51 16 11 C -0.13 -4.29 6.16 71.24 0.44 -3.86 16 12 S -0.15 -7.70 20.57 -56.49 -1.16 -8.87 16 13 C -0.54 -29.25 9.50 67.95 0.65 -28.60 16 14 H 0.09 4.30 7.80 -2.91 -0.02 4.27 16 15 C 0.01 0.72 5.49 84.85 0.47 1.18 16 16 N -0.91 -54.53 13.22 21.65 0.29 -54.24 16 17 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.03 -0.45 9.47 22.45 0.21 -0.24 16 22 C -0.04 -0.67 6.84 36.32 0.25 -0.43 16 23 N 0.03 0.65 4.45 -46.60 -0.21 0.44 16 24 O -0.16 -3.28 18.43 18.88 0.35 -2.93 16 25 O -0.16 -3.46 18.43 18.90 0.35 -3.11 16 26 C 0.00 -0.03 9.12 22.55 0.21 0.17 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.15 4.65 5.82 -2.91 -0.02 4.63 16 31 H 0.44 4.36 8.82 -92.71 -0.82 3.54 16 32 H 0.12 3.52 8.14 -2.40 -0.02 3.50 16 33 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.19 1.75 7.59 -2.91 -0.02 1.73 16 36 H 0.19 2.45 7.14 -2.91 -0.02 2.43 16 Total: -1.00 -78.13 349.90 5.06 -73.07 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.35 Total: 9.79 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.95 Total: 0.04 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.54 Total: -67.72 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: 0.43 Total: -50.35 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.87 kcal Total: -78.13 5.06 -73.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265575114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.835 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds