Wall clock time and date at job start Sat Apr 11 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 116.99910 * 2 1 4 4 C 1.39190 * 120.38153 * 0.02562 * 3 2 1 5 5 C 1.38328 * 118.47022 * 179.97438 * 4 3 2 6 6 C 1.39522 * 119.15079 * 0.02562 * 5 4 3 7 7 C 1.47772 * 119.66360 * 179.97438 * 6 5 4 8 8 O 1.21593 * 119.99792 * 353.89535 * 7 6 5 9 9 N 1.34769 * 120.00076 * 173.89770 * 7 6 5 10 10 C 1.36824 * 120.00209 * 184.51485 * 9 7 6 11 11 H 1.08001 * 120.00121 * 221.43498 * 10 9 7 12 12 C 1.39073 * 119.99616 * 41.43931 * 10 9 7 13 13 N 1.31344 * 120.00286 * 13.72483 * 12 10 9 14 14 Si 1.86804 * 119.99703 * 193.73083 * 12 10 9 15 15 H 1.48503 * 109.47166 * 179.97438 * 14 12 10 16 16 H 1.48506 * 109.46655 * 299.99318 * 14 12 10 17 17 H 1.48493 * 109.47385 * 59.99287 * 14 12 10 18 18 C 1.46503 * 120.00091 * 4.51522 * 9 7 6 19 19 C 1.52995 * 117.50281 * 181.19990 * 18 9 7 20 20 C 1.52994 * 60.00285 * 252.51060 * 19 18 9 21 21 N 1.32890 * 120.67130 * 0.25055 * 6 5 4 22 22 C 1.31452 * 121.67453 * 359.48245 * 21 6 5 23 23 Br 1.89097 * 119.60748 * 180.24398 * 22 21 6 24 24 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46851 * 299.99378 * 1 2 3 26 26 H 1.08995 * 109.47419 * 59.99471 * 1 2 3 27 27 H 1.08004 * 120.76434 * 359.95427 * 4 3 2 28 28 H 1.08001 * 120.42484 * 180.02562 * 5 4 3 29 29 H 0.96996 * 119.99631 * 174.98082 * 13 12 10 30 30 H 1.09007 * 115.54650 * 326.90890 * 18 9 7 31 31 H 1.09007 * 117.49747 * 0.02562 * 19 18 9 32 32 H 1.08996 * 117.50282 * 145.01588 * 19 18 9 33 33 H 1.09004 * 117.49830 * 252.50898 * 20 19 18 34 34 H 1.08993 * 117.52319 * 107.47841 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2949 2.3818 0.0005 5 6 1.9636 3.5927 0.0011 6 6 3.3589 3.5985 0.0005 7 6 4.0848 4.8857 0.0005 8 8 3.4714 5.9296 -0.1110 9 7 5.4267 4.9025 0.1240 10 6 6.0903 6.0954 0.2169 11 1 7.0186 6.2399 -0.3158 12 6 5.5695 7.1218 0.9975 13 7 4.6027 6.8722 1.8508 14 14 6.2448 8.8556 0.8322 15 1 5.5257 9.7582 1.7669 16 1 7.6934 8.8558 1.1594 17 1 6.0521 9.3313 -0.5612 18 6 6.1750 3.6434 0.1588 19 6 7.6931 3.7282 0.3288 20 6 7.0956 3.3358 -1.0239 21 7 4.0415 2.4584 -0.0055 22 6 3.4364 1.2915 -0.0011 23 35 4.4657 -0.2948 -0.0031 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2154 2.3468 0.0002 28 1 1.4128 4.5217 0.0019 29 1 4.2892 7.5706 2.4464 30 1 5.6616 2.8043 0.6285 31 1 8.1352 4.7209 0.4153 32 1 8.1789 2.9450 0.9107 33 1 7.1884 2.2944 -1.3320 34 1 7.1443 4.0700 -1.8280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272725399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:17 Heat of formation + Delta-G solvation = 34.135808 kcal Electronic energy + Delta-G solvation = -21773.342743 eV Core-core repulsion = 18334.809825 eV Total energy + Delta-G solvation = -3438.532918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57795 -38.82522 -37.50994 -35.91925 -32.94342 -32.45731 -31.64219 -30.63032 -29.35212 -27.65696 -25.36668 -23.34302 -22.90322 -21.52345 -20.94891 -19.88125 -18.18400 -17.53709 -16.63597 -16.04550 -15.95645 -15.00154 -14.71920 -14.37689 -14.16797 -13.94305 -13.75096 -13.37027 -13.10574 -12.76348 -12.40416 -11.93633 -11.55350 -11.45268 -11.06663 -10.97176 -10.89015 -10.71168 -10.49557 -10.28561 -10.21972 -9.87653 -9.82305 -9.49122 -8.89992 -8.74721 -8.15753 -8.07393 -7.03177 -6.18919 -3.89732 1.04676 1.24247 1.57506 3.05171 3.27231 3.33779 3.36240 3.51850 4.18094 4.52922 4.62028 4.69781 4.76501 4.97226 4.98186 5.05795 5.12257 5.28632 5.30329 5.37100 5.62657 5.96831 5.99737 6.04311 6.11107 6.34967 6.43786 6.45595 6.67635 7.02046 7.06950 7.26626 7.51855 7.89543 8.18369 8.95734 9.10306 9.56792 10.24033 10.88087 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.004701 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.279069 B = 5954.369436 C = 7282.718252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.300 6.300 3 C 0.096 3.904 4 C -0.164 4.164 5 C -0.073 4.073 6 C 0.095 3.905 7 C 0.511 3.489 8 O -0.530 6.530 9 N -0.396 5.396 10 C -0.329 4.329 11 H 0.085 0.915 12 C 0.061 3.939 13 N -0.819 5.819 14 Si 0.920 3.080 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.074 3.926 19 C -0.188 4.188 20 C -0.199 4.199 21 N -0.400 5.400 22 C 0.089 3.911 23 Br -0.009 7.009 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.268 0.732 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 -15.258 -2.461 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.045 3.955 4 C -0.191 4.191 5 C -0.094 4.094 6 C -0.046 4.046 7 C 0.298 3.702 8 O -0.409 6.409 9 N -0.114 5.114 10 C -0.457 4.457 11 H 0.103 0.897 12 C -0.150 4.150 13 N -0.452 5.452 14 Si 0.747 3.253 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.198 1.198 18 C -0.031 4.031 19 C -0.226 4.226 20 C -0.238 4.238 21 N -0.114 5.114 22 C -0.130 4.130 23 Br 0.075 6.925 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.947 -15.338 -2.422 16.297 hybrid contribution -1.009 1.194 0.083 1.565 sum -5.956 -14.144 -2.338 15.524 Atomic orbital electron populations 1.23121 0.78250 1.04157 1.01565 1.86125 1.21341 1.25505 1.88166 1.19673 0.91770 0.85596 0.98435 1.21595 1.00618 0.91309 1.05564 1.22057 0.94507 0.98721 0.94121 1.22084 0.91764 0.92563 0.98154 1.17007 0.82850 0.85314 0.84996 1.90623 1.66229 1.31448 1.52570 1.42673 1.03924 1.03878 1.60891 1.19079 1.08064 0.89269 1.29284 0.89735 1.25312 0.95471 0.99993 0.94244 1.69811 1.24261 1.34193 1.16964 0.86136 0.78305 0.82415 0.78445 1.20999 1.20142 1.19819 1.22754 0.88989 0.90806 1.00591 1.23145 0.97464 1.02591 0.99371 1.23155 1.07321 1.00698 0.92613 1.68065 1.37130 0.96439 1.09770 1.22166 0.87958 0.93827 1.09041 1.96689 1.71850 1.26331 1.97623 0.87970 0.92433 0.92460 0.83608 0.82880 0.92218 0.83501 0.88071 0.89877 0.89764 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 101.05 0.99 1.19 16 2 O -0.30 -3.79 9.83 -18.92 -0.19 -3.98 16 3 C 0.10 1.46 6.71 -38.81 -0.26 1.20 16 4 C -0.16 -2.35 9.12 -39.19 -0.36 -2.71 16 5 C -0.07 -1.32 9.62 -39.07 -0.38 -1.69 16 6 C 0.10 2.07 6.67 -83.03 -0.55 1.51 16 7 C 0.51 13.50 6.79 -12.37 -0.08 13.41 16 8 O -0.53 -15.56 13.89 5.28 0.07 -15.49 16 9 N -0.40 -10.35 2.86 -108.82 -0.31 -10.66 16 10 C -0.33 -9.03 8.13 -15.01 -0.12 -9.15 16 11 H 0.09 2.22 6.99 -52.49 -0.37 1.85 16 12 C 0.06 1.70 4.54 -17.45 -0.08 1.62 16 13 N -0.82 -23.93 11.26 55.50 0.63 -23.30 16 14 Si 0.92 21.48 29.58 -169.99 -5.03 16.46 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.07 1.64 5.20 -67.93 -0.35 1.29 16 19 C -0.19 -3.68 9.79 -26.74 -0.26 -3.95 16 20 C -0.20 -3.83 10.38 -26.73 -0.28 -4.11 16 21 N -0.40 -7.96 5.90 -8.10 -0.05 -8.01 16 22 C 0.09 1.52 7.18 -17.30 -0.12 1.40 16 23 Br -0.01 -0.13 33.33 -68.01 -2.27 -2.39 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 26 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 27 H 0.15 1.51 6.43 -52.48 -0.34 1.17 16 28 H 0.15 2.74 7.65 -52.49 -0.40 2.34 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.15 3.21 5.15 -54.59 -0.28 2.93 16 31 H 0.10 2.10 6.60 -51.93 -0.34 1.76 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -32.35 311.01 -7.66 -40.01 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.35 Total: 2.66 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.86 Total: 0.01 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.27 Total: -41.97 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.11 Total: -19.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.27 Total: -2.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.35 -7.66 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272725399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.148 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds