Wall clock time and date at job start Sat Apr 11 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48493 * 109.47377 * 240.00105 * 3 2 1 5 5 H 1.48507 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47124 * 119.99961 * 3 2 1 7 7 C 1.37882 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99563 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47183 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47233 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00121 * 180.02562 * 11 10 9 13 13 O 1.21365 * 119.99652 * 359.97438 * 12 11 10 14 14 C 1.49349 * 120.00059 * 180.02562 * 12 11 10 15 15 O 1.21375 * 120.00296 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99809 * 180.27492 * 14 12 11 17 17 C 1.39755 * 120.00251 * 175.22201 * 16 14 12 18 18 C 1.38928 * 120.07751 * 34.72154 * 17 16 14 19 19 C 1.38082 * 119.92968 * 180.02562 * 18 17 16 20 20 C 1.38312 * 120.09703 * 359.97438 * 19 18 17 21 21 C 1.38264 * 120.16184 * 0.02562 * 20 19 18 22 22 C 1.38198 * 120.06158 * 359.67873 * 21 20 19 23 23 Br 1.89100 * 120.04710 * 180.29828 * 22 21 20 24 24 H 0.96993 * 120.00227 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47379 * 59.99933 * 9 7 2 26 26 H 1.08997 * 109.46930 * 299.99914 * 9 7 2 27 27 H 1.09004 * 109.46687 * 59.99914 * 10 9 7 28 28 H 1.08998 * 109.47010 * 300.00309 * 10 9 7 29 29 H 0.97002 * 120.00157 * 0.02562 * 11 10 9 30 30 H 0.97008 * 119.99934 * 355.21552 * 16 14 12 31 31 H 1.07999 * 120.03452 * 359.97438 * 18 17 16 32 32 H 1.08008 * 119.95530 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.91770 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.96625 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5129 -4.9308 -0.0033 12 6 2.1867 -6.0980 -0.0037 13 8 3.4004 -6.0980 -0.0041 14 6 1.4400 -7.3914 -0.0048 15 8 0.2262 -7.3915 -0.0058 16 7 2.1139 -8.5586 0.0004 17 6 1.4184 -9.7667 0.1002 18 6 0.1711 -9.9034 -0.4963 19 6 -0.5136 -11.0982 -0.3953 20 6 0.0406 -12.1588 0.2981 21 6 1.2817 -12.0271 0.8933 22 6 1.9755 -10.8362 0.7912 23 35 3.6765 -10.6593 1.5982 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5564 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8720 -3.6051 0.8873 28 1 2.8720 -3.6036 -0.8926 29 1 0.5428 -4.9309 -0.0033 30 1 3.0817 -8.5602 -0.0652 31 1 -0.2628 -9.0757 -1.0377 32 1 -1.4835 -11.2048 -0.8586 33 1 -0.4977 -13.0919 0.3756 34 1 1.7113 -12.8571 1.4344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273119758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:26 Heat of formation + Delta-G solvation = -63.881055 kcal Electronic energy + Delta-G solvation = -20087.777561 eV Core-core repulsion = 16644.994313 eV Total energy + Delta-G solvation = -3442.783248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.28150 -40.58272 -39.32141 -37.03559 -36.07675 -34.83522 -33.35955 -31.77181 -31.18416 -30.12433 -27.52915 -25.73577 -23.98960 -23.17961 -22.68318 -21.49613 -19.97556 -18.74103 -18.54811 -17.73500 -17.37950 -16.95381 -16.59987 -16.44874 -16.21490 -15.56697 -15.34060 -14.94635 -14.73032 -14.49258 -14.30852 -14.24728 -13.30788 -13.23437 -12.94031 -12.63712 -12.54802 -12.41079 -12.28815 -11.96378 -11.72347 -11.64595 -11.45833 -11.37387 -10.81800 -10.61829 -10.27027 -9.87167 -9.39263 -8.23940 -6.35102 -0.27416 0.12769 0.41572 0.49450 1.09591 1.43335 1.45300 1.53349 1.93453 2.35664 2.48693 2.60042 3.11197 3.22854 3.68462 4.01002 4.18256 4.28564 4.32730 4.36359 4.43616 4.72028 4.79758 4.94166 5.00267 5.08626 5.24149 5.40038 5.42513 5.54065 5.67841 5.77198 5.79493 6.11490 6.17633 6.48059 6.74540 6.81148 7.34491 8.87896 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.002371 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.841383 B =11804.589722 C =12820.100070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.137 3.863 11 N -0.682 5.682 12 C 0.504 3.496 13 O -0.542 6.542 14 C 0.519 3.481 15 O -0.508 6.508 16 N -0.639 5.639 17 C 0.145 3.855 18 C -0.133 4.133 19 C -0.083 4.083 20 C -0.116 4.116 21 C -0.073 4.073 22 C -0.128 4.128 23 Br -0.044 7.044 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.416 0.584 30 H 0.427 0.573 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -29.850 1.145 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.015 3.985 11 N -0.334 5.334 12 C 0.284 3.716 13 O -0.421 6.421 14 C 0.302 3.698 15 O -0.383 6.383 16 N -0.286 5.286 17 C 0.049 3.951 18 C -0.153 4.153 19 C -0.101 4.101 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.210 4.210 23 Br 0.041 6.959 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.253 0.747 30 H 0.267 0.733 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.762 -29.564 1.458 29.729 hybrid contribution -0.031 1.244 -0.194 1.259 sum 2.732 -28.320 1.264 28.480 Atomic orbital electron populations 1.70062 1.07676 1.28120 1.50887 1.25903 0.95761 1.03236 0.94404 0.85475 0.78240 0.77987 0.79214 1.19167 1.20868 1.19237 1.21424 0.93781 0.91561 1.51682 0.91682 1.19171 0.94321 0.91790 0.96552 1.21534 0.95145 0.80472 1.01385 1.46033 1.12006 1.05232 1.70089 1.19935 0.87473 0.85264 0.78895 1.90754 1.13767 1.87645 1.49902 1.20151 0.87419 0.85182 0.77092 1.90757 1.13527 1.87372 1.46624 1.43208 1.12190 1.03263 1.69972 1.17670 0.94397 0.84590 0.98436 1.21440 0.93825 0.99990 1.00077 1.21577 1.00478 0.91234 0.96853 1.21632 0.94713 1.00406 0.96774 1.21340 0.94709 0.95107 0.98136 1.21870 0.95640 0.98092 1.05350 1.96764 1.20403 1.98272 1.80455 0.92545 0.97257 0.97357 0.91879 0.91709 0.74697 0.73291 0.84695 0.82298 0.81301 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.02 0.95 5.09 29.85 0.15 1.10 16 10 C 0.14 5.63 5.61 86.38 0.48 6.12 16 11 N -0.68 -24.20 5.55 -464.51 -2.58 -26.77 16 12 C 0.50 16.92 7.89 87.24 0.69 17.61 16 13 O -0.54 -20.03 16.48 -3.29 -0.05 -20.08 16 14 C 0.52 15.29 7.73 87.24 0.67 15.96 16 15 O -0.51 -15.99 13.89 -3.33 -0.05 -16.04 16 16 N -0.64 -16.02 4.99 -304.77 -1.52 -17.55 16 17 C 0.15 3.26 6.30 38.22 0.24 3.50 16 18 C -0.13 -2.76 8.70 22.40 0.19 -2.56 16 19 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 20 C -0.12 -1.23 10.04 22.29 0.22 -1.01 16 21 C -0.07 -0.97 9.78 22.27 0.22 -0.75 16 22 C -0.13 -2.41 6.24 22.44 0.14 -2.27 16 23 Br -0.04 -0.83 32.48 -20.37 -0.66 -1.49 16 24 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.42 14.01 7.94 -92.71 -0.74 13.27 16 30 H 0.43 10.18 7.33 -92.70 -0.68 9.50 16 31 H 0.14 3.19 6.20 -2.91 -0.02 3.17 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -64.77 323.79 1.13 -63.64 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.25 Total: 19.41 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 3.94 Total: 7.94 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.81 Total: -98.50 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.10 Total: -36.12 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.66 Total: -1.49 kcal Total: -64.77 1.13 -63.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273119758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.239 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds