Wall clock time and date at job start Sat Apr 11 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46846 * 299.28259 * 3 2 1 5 5 C 1.36937 * 119.99713 * 273.47897 * 4 3 2 6 6 H 1.07999 * 119.99832 * 186.61981 * 5 4 3 7 7 C 1.38811 * 120.00123 * 6.62844 * 5 4 3 8 8 N 1.31623 * 120.00141 * 25.14440 * 7 5 4 9 9 Si 1.86797 * 119.99976 * 205.13549 * 7 5 4 10 10 H 1.48504 * 109.47030 * 90.00414 * 9 7 5 11 11 H 1.48500 * 109.47315 * 210.00025 * 9 7 5 12 12 H 1.48497 * 109.47292 * 330.00571 * 9 7 5 13 13 S 1.65599 * 120.00110 * 93.48552 * 4 3 2 14 14 O 1.42108 * 106.39974 * 336.45611 * 13 4 3 15 15 O 1.42095 * 106.40102 * 203.53559 * 13 4 3 16 16 C 1.76197 * 107.21854 * 89.99439 * 13 4 3 17 17 C 1.38171 * 120.02583 * 114.99924 * 16 13 4 18 18 C 1.38250 * 120.05350 * 180.23358 * 17 16 13 19 19 C 1.38288 * 120.10982 * 359.49115 * 18 17 16 20 20 N 1.48003 * 119.96980 * 180.23433 * 19 18 17 21 21 O 1.21800 * 119.99915 * 180.27546 * 20 19 18 22 22 O 1.21795 * 119.99939 * 0.27530 * 20 19 18 23 23 C 1.38124 * 120.05751 * 0.51234 * 19 18 17 24 24 C 1.38712 * 120.02945 * 294.98134 * 16 13 4 25 25 O 1.35902 * 120.05631 * 359.97438 * 24 16 13 26 26 C 1.42897 * 117.00075 * 180.02562 * 25 24 16 27 27 H 4.40648 * 5.51442 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46929 * 179.28428 * 3 2 1 29 29 H 1.08997 * 109.46914 * 59.28158 * 3 2 1 30 30 H 0.96995 * 120.00363 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.97061 * 359.95938 * 17 16 13 32 32 H 1.08001 * 119.93798 * 179.72717 * 18 17 16 33 33 H 1.07995 * 120.02818 * 179.77268 * 23 19 18 34 34 H 1.08996 * 109.47481 * 179.97438 * 26 25 24 35 35 H 1.08999 * 109.47150 * 300.00363 * 26 25 24 36 36 H 1.09008 * 109.46865 * 59.99908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.6747 1.2048 5 6 3.2946 0.0304 2.3677 6 1 3.7543 -0.4390 3.2249 7 6 2.8659 1.3484 2.4448 8 7 1.9044 1.7751 1.6537 9 14 3.6533 2.5164 3.6717 10 1 4.8139 3.1918 3.0375 11 1 2.6585 3.5346 4.0945 12 1 4.1136 1.7514 4.8583 13 16 3.4935 -2.2907 1.1602 14 8 2.7432 -2.8389 0.0850 15 8 3.3932 -2.7611 2.4973 16 6 5.1902 -2.4359 0.7077 17 6 6.1018 -2.9627 1.6025 18 6 7.4340 -3.0724 1.2498 19 6 7.8559 -2.6652 -0.0026 20 7 9.2820 -2.7889 -0.3788 21 8 9.6550 -2.4257 -1.4799 22 8 10.0825 -3.2538 0.4128 23 6 6.9486 -2.1379 -0.9006 24 6 5.6118 -2.0218 -0.5472 25 8 4.7170 -1.5041 -1.4294 26 6 5.2220 -1.0990 -2.7033 27 1 -1.0500 -0.0003 0.0001 28 1 3.0089 1.0284 -0.0128 29 1 3.0096 -0.5241 -0.8835 30 1 1.6051 2.6961 1.7073 31 1 5.7740 -3.2849 2.5798 32 1 8.1457 -3.4804 1.9523 33 1 7.2793 -1.8166 -1.8772 34 1 4.4060 -0.7056 -3.3093 35 1 5.9781 -0.3261 -2.5654 36 1 5.6673 -1.9570 -3.2072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281273449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:53 Heat of formation + Delta-G solvation = 4.145640 kcal Electronic energy + Delta-G solvation = -28104.102526 eV Core-core repulsion = 23880.740528 eV Total energy + Delta-G solvation = -4223.361997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.29206 -40.37471 -37.80276 -36.66508 -36.38535 -36.18569 -34.85333 -32.20399 -32.00623 -31.20836 -30.61814 -27.88515 -26.63610 -26.54112 -23.98961 -22.80473 -22.65588 -19.79743 -18.92152 -18.80651 -18.15836 -17.83873 -17.65176 -17.08263 -16.74404 -16.37932 -16.24716 -15.86711 -14.78810 -14.69705 -14.48271 -14.16160 -13.73822 -13.52558 -13.22460 -13.12790 -12.51707 -12.15892 -12.01575 -11.82769 -11.65550 -11.50832 -11.37206 -11.31316 -11.24390 -11.12822 -11.09106 -11.00748 -10.62844 -10.45575 -10.34761 -9.90153 -9.71968 -9.21114 -8.84024 -8.77077 -8.38000 -6.59989 -4.00903 -0.40246 0.94073 1.07476 1.22324 1.32648 2.89913 3.04156 3.06193 3.13173 3.15313 3.68730 4.00830 4.23130 4.26523 4.36055 4.44373 4.49645 4.56369 4.82069 4.89909 5.00507 5.07114 5.18146 5.34292 5.37031 5.51633 5.60145 5.65540 5.90895 6.09370 6.15433 6.32044 6.67720 6.89219 6.91031 7.16363 7.24833 7.54818 8.07907 8.56123 8.93137 8.97210 10.33373 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012891 B = 0.004724 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.501488 B = 5925.265703 C = 6519.881677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.095 4.095 3 C 0.240 3.760 4 N -0.808 5.808 5 C -0.294 4.294 6 H 0.119 0.881 7 C 0.047 3.953 8 N -0.816 5.816 9 Si 0.905 3.095 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.265 1.265 13 S 2.594 3.406 14 O -0.961 6.961 15 O -0.966 6.966 16 C -0.653 4.653 17 C 0.008 3.992 18 C -0.115 4.115 19 C 0.022 3.978 20 N 0.027 4.973 21 O -0.163 6.163 22 O -0.155 6.155 23 C -0.173 4.173 24 C 0.220 3.780 25 O -0.291 6.291 26 C 0.017 3.983 27 H 0.198 0.802 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.275 0.725 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -2.385 -5.666 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.098 4.098 3 C 0.115 3.885 4 N -0.636 5.636 5 C -0.434 4.434 6 H 0.137 0.863 7 C -0.165 4.165 8 N -0.454 5.454 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.189 1.189 13 S 2.683 3.317 14 O -0.950 6.950 15 O -0.955 6.955 16 C -0.728 4.728 17 C -0.011 4.011 18 C -0.135 4.135 19 C -0.061 4.061 20 N 0.547 4.453 21 O -0.378 6.378 22 O -0.372 6.372 23 C -0.193 4.193 24 C 0.171 3.829 25 O -0.203 6.203 26 C -0.077 4.077 27 H 0.215 0.785 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.103 -3.004 -5.471 8.062 hybrid contribution 1.573 1.095 0.124 1.920 sum 6.676 -1.909 -5.347 8.764 Atomic orbital electron populations 1.24187 0.95304 1.05403 1.03639 1.22813 0.93999 0.96065 0.96885 1.18028 0.84860 0.99808 0.85761 1.54000 1.65174 1.30022 1.14371 1.19633 1.39311 0.95983 0.88452 0.86334 1.25243 0.95106 0.97462 0.98667 1.70215 1.19848 1.17361 1.37976 0.86263 0.79493 0.80273 0.80904 1.20095 1.20646 1.18924 1.07828 0.75657 0.74788 0.73440 1.93495 1.68507 1.77369 1.55608 1.93429 1.86137 1.80188 1.35766 1.32426 1.33746 1.08387 0.98252 1.20899 0.90007 0.91200 0.99011 1.21099 0.97700 1.00474 0.94253 1.20909 0.80291 1.07592 0.97332 1.43682 1.03437 0.97982 1.00223 1.94518 1.83441 1.51265 1.08573 1.94528 1.49734 1.45278 1.47651 1.21002 0.92095 1.04495 1.01728 1.18058 0.86900 0.89418 0.88558 1.86291 1.33988 1.74709 1.25294 1.23311 1.02213 1.00037 0.82152 0.78479 0.88223 0.90155 0.91364 0.81452 0.82540 0.82352 0.86793 0.91823 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.65 19.25 29.55 0.57 -5.08 16 2 C -0.09 -2.16 11.23 -37.12 -0.42 -2.58 16 3 C 0.24 5.15 4.93 -6.82 -0.03 5.11 16 4 N -0.81 -18.20 2.88 -62.77 -0.18 -18.38 16 5 C -0.29 -6.94 9.38 -15.06 -0.14 -7.08 16 6 H 0.12 2.74 7.39 -52.49 -0.39 2.35 16 7 C 0.05 1.08 4.93 -17.43 -0.09 0.99 16 8 N -0.82 -19.28 8.95 55.49 0.50 -18.79 16 9 Si 0.91 17.95 29.62 -169.99 -5.04 12.91 16 10 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 S 2.59 55.52 5.20 -107.50 -0.56 54.96 16 14 O -0.96 -22.10 16.30 -62.49 -1.02 -23.12 16 15 O -0.97 -22.31 15.84 -57.17 -0.91 -23.21 16 16 C -0.65 -11.56 5.92 -39.43 -0.23 -11.79 16 17 C 0.01 0.13 9.55 -39.60 -0.38 -0.25 16 18 C -0.12 -1.59 9.55 -39.56 -0.38 -1.97 16 19 C 0.02 0.32 6.85 -79.98 -0.55 -0.23 16 20 N 0.03 0.41 4.45 33.95 0.15 0.56 16 21 O -0.16 -2.47 18.45 -29.46 -0.54 -3.01 16 22 O -0.15 -2.35 18.45 -29.46 -0.54 -2.90 16 23 C -0.17 -2.45 8.54 -39.43 -0.34 -2.78 16 24 C 0.22 3.53 6.63 -39.22 -0.26 3.27 16 25 O -0.29 -4.46 6.46 -29.16 -0.19 -4.65 16 26 C 0.02 0.17 9.81 101.05 0.99 1.17 16 27 H 0.20 3.41 7.80 -54.09 -0.42 2.99 16 28 H 0.10 2.15 6.42 -51.93 -0.33 1.81 16 29 H 0.08 1.54 4.84 -51.93 -0.25 1.29 16 30 H 0.28 6.16 8.31 -40.82 -0.34 5.82 16 31 H 0.17 2.31 7.33 -52.49 -0.38 1.92 16 32 H 0.16 1.76 7.61 -52.49 -0.40 1.36 16 33 H 0.16 1.84 5.85 -52.49 -0.31 1.53 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 36 H 0.06 0.53 7.66 -51.92 -0.40 0.13 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -29.66 333.53 -7.39 -37.05 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -2.84 Total: 4.79 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.25 Total: -21.23 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.47 Total: -36.61 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -3.20 Total: -56.90 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.04 Total: 12.91 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.56 Total: 54.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.66 -7.39 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281273449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.192 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds