Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47325 * 65.03025 * 3 2 1 5 5 C 1.36935 * 120.00247 * 273.26246 * 4 3 2 6 6 H 1.07995 * 120.00405 * 186.69125 * 5 4 3 7 7 C 1.38815 * 119.99753 * 6.69081 * 5 4 3 8 8 N 1.31619 * 120.00048 * 25.19011 * 7 5 4 9 9 Si 1.86796 * 120.00012 * 205.19275 * 7 5 4 10 10 H 1.48494 * 109.47315 * 90.00009 * 9 7 5 11 11 H 1.48498 * 109.47141 * 210.00100 * 9 7 5 12 12 H 1.48501 * 109.46957 * 330.00065 * 9 7 5 13 13 S 1.65604 * 119.99991 * 93.25674 * 4 3 2 14 14 O 1.42096 * 106.40307 * 156.46045 * 13 4 3 15 15 O 1.42101 * 106.40254 * 23.54307 * 13 4 3 16 16 C 1.76199 * 107.22071 * 270.00422 * 13 4 3 17 17 C 1.38284 * 119.94463 * 89.99728 * 16 13 4 18 18 C 1.38125 * 120.05375 * 180.02562 * 17 16 13 19 19 C 1.38753 * 119.94649 * 359.97438 * 18 17 16 20 20 O 1.35897 * 120.05133 * 179.97438 * 19 18 17 21 21 C 1.42891 * 117.00504 * 359.97438 * 20 19 18 22 22 C 1.38707 * 119.88635 * 0.24728 * 19 18 17 23 23 N 1.48007 * 120.02810 * 179.74730 * 22 19 18 24 24 O 1.21794 * 119.99998 * 180.02562 * 23 22 19 25 25 O 1.21805 * 119.99506 * 0.02562 * 23 22 19 26 26 C 1.38166 * 119.94248 * 359.51886 * 22 19 18 27 27 H 4.40641 * 5.51301 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47117 * 305.02694 * 3 2 1 29 29 H 1.08999 * 109.47041 * 185.02759 * 3 2 1 30 30 H 0.97003 * 120.00115 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.97069 * 0.02772 * 17 16 13 32 32 H 1.08001 * 120.02424 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47244 * 179.97438 * 21 20 19 34 34 H 1.09000 * 109.47602 * 300.00023 * 21 20 19 35 35 H 1.09000 * 109.46994 * 60.00068 * 21 20 19 36 36 H 1.08006 * 119.96983 * 180.22997 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5822 -1.2521 5 6 3.2999 -1.9374 -1.3579 6 1 3.7607 -2.3581 -2.2394 7 6 2.8751 -2.7706 -0.3321 8 7 1.9121 -2.3809 0.4761 9 14 3.6703 -4.4446 -0.0986 10 1 4.8304 -4.3179 0.8196 11 1 2.6799 -5.3864 0.4822 12 1 4.1327 -4.9605 -1.4121 13 16 3.4871 0.3979 -2.5396 14 8 4.4126 -0.3170 -3.3466 15 8 3.7572 1.6852 -2.0018 16 6 2.0139 0.5563 -3.4932 17 6 1.1226 1.5781 -3.2221 18 6 -0.0331 1.7041 -3.9679 19 6 -0.2992 0.8045 -4.9902 20 8 -1.4359 0.9260 -5.7250 21 6 -2.3130 2.0032 -5.3900 22 6 0.5942 -0.2224 -5.2572 23 7 0.3108 -1.1871 -6.3433 24 8 1.0954 -2.0889 -6.5770 25 8 -0.7072 -1.0791 -7.0034 26 6 1.7513 -0.3412 -4.5114 27 1 -1.0499 0.0001 -0.0002 28 1 3.0096 -0.5890 0.8415 29 1 3.0089 1.0245 0.0901 30 1 1.6150 -2.9633 1.1928 31 1 1.3304 2.2784 -2.4265 32 1 -0.7291 2.5021 -3.7554 33 1 -3.1791 1.9858 -6.0516 34 1 -2.6424 1.8956 -4.3566 35 1 -1.7862 2.9503 -5.5066 36 1 2.4490 -1.1384 -4.7214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281295512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -5.531390 kcal Electronic energy + Delta-G solvation = -28068.307023 eV Core-core repulsion = 23844.525398 eV Total energy + Delta-G solvation = -4223.781625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86369 -40.17160 -37.66516 -36.59053 -36.11135 -36.03133 -34.60024 -32.31124 -31.94455 -31.38539 -30.50518 -27.75798 -26.84678 -26.13866 -24.09046 -22.69503 -22.38420 -19.60081 -18.73409 -18.35595 -18.19546 -17.85153 -17.24673 -16.92071 -16.69479 -16.32267 -16.06817 -15.98988 -14.89213 -14.66016 -14.50533 -14.04041 -13.72669 -13.44371 -13.08090 -13.05351 -12.61767 -12.27851 -12.06044 -11.73900 -11.50775 -11.42443 -11.17616 -11.16531 -10.95122 -10.89846 -10.78731 -10.74885 -10.62523 -10.48363 -10.21993 -9.88020 -9.54360 -9.43804 -9.11095 -8.74693 -8.55447 -6.88693 -4.19546 0.19384 0.90404 1.43294 1.63043 1.74599 2.79279 2.97797 3.04463 3.09340 3.26681 3.58219 3.81220 3.93022 4.33220 4.39188 4.44421 4.50547 4.86133 4.86351 4.88551 4.98222 5.18826 5.21198 5.32759 5.38332 5.46608 5.72736 5.84928 6.06479 6.20487 6.36903 6.51200 6.60573 6.76041 6.90808 6.94646 7.00318 7.90207 8.05412 8.26517 8.66234 8.70888 10.00981 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.004936 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.723399 B = 5671.661737 C = 6173.464857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.115 4.115 3 C 0.229 3.771 4 N -0.780 5.780 5 C -0.225 4.225 6 H 0.130 0.870 7 C 0.027 3.973 8 N -0.803 5.803 9 Si 0.937 3.063 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.259 1.259 13 S 2.494 3.506 14 O -0.978 6.978 15 O -0.995 6.995 16 C -0.686 4.686 17 C 0.058 3.942 18 C -0.235 4.235 19 C 0.213 3.787 20 O -0.285 6.285 21 C 0.019 3.981 22 C -0.101 4.101 23 N 0.042 4.958 24 O -0.177 6.177 25 O -0.154 6.154 26 C 0.071 3.929 27 H 0.196 0.804 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.282 0.718 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 6.079 -1.074 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.600 5.600 5 C -0.377 4.377 6 H 0.148 0.852 7 C -0.188 4.188 8 N -0.441 5.441 9 Si 0.761 3.239 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.182 1.182 13 S 2.592 3.408 14 O -0.967 6.967 15 O -0.984 6.984 16 C -0.761 4.761 17 C 0.039 3.961 18 C -0.255 4.255 19 C 0.164 3.836 20 O -0.195 6.195 21 C -0.075 4.075 22 C -0.187 4.187 23 N 0.558 4.442 24 O -0.388 6.388 25 O -0.371 6.371 26 C 0.051 3.949 27 H 0.213 0.787 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.456 7.084 -1.017 8.999 hybrid contribution -1.356 -0.904 -0.243 1.648 sum -6.812 6.180 -1.260 9.284 Atomic orbital electron populations 1.24219 0.95304 1.06691 1.02042 1.23386 0.94539 0.95110 0.98718 1.18618 0.83875 0.98113 0.88988 1.56012 1.69763 1.16641 1.17555 1.20483 1.28983 0.81697 1.06494 0.85221 1.25795 0.95060 1.00766 0.97159 1.70224 1.20362 1.37500 1.16013 0.85716 0.79031 0.79172 0.80011 1.19301 1.20452 1.18231 1.14254 0.79095 0.74381 0.73091 1.93357 1.62129 1.72166 1.69055 1.93327 1.85722 1.41566 1.77832 1.32976 1.29068 1.01990 1.12068 1.21072 0.89115 0.92469 0.93456 1.21362 1.01943 1.02701 0.99504 1.18710 0.84978 0.90909 0.89044 1.86388 1.28856 1.49922 1.54332 1.23276 0.93250 0.88527 1.02485 1.20710 1.01418 0.97004 0.99528 1.43311 0.99823 1.00477 1.00560 1.94538 1.44638 1.25935 1.73680 1.94522 1.15791 1.79285 1.47531 1.20686 0.91208 0.95386 0.87573 0.78691 0.86376 0.89618 0.90719 0.83252 0.83337 0.87294 0.91903 0.92039 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.89 19.25 29.55 0.57 -4.32 16 2 C -0.11 -2.29 11.25 -37.12 -0.42 -2.71 16 3 C 0.23 4.57 5.45 -6.83 -0.04 4.54 16 4 N -0.78 -16.79 2.88 -62.78 -0.18 -16.97 16 5 C -0.22 -5.00 9.48 -15.06 -0.14 -5.14 16 6 H 0.13 2.88 7.22 -52.49 -0.38 2.50 16 7 C 0.03 0.58 4.92 -17.43 -0.09 0.50 16 8 N -0.80 -17.38 8.96 55.49 0.50 -16.88 16 9 Si 0.94 17.06 29.62 -169.99 -5.04 12.03 16 10 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 11 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 13 S 2.49 53.63 5.65 -107.50 -0.61 53.02 16 14 O -0.98 -23.31 16.05 -57.17 -0.92 -24.22 16 15 O -1.00 -22.09 15.85 -57.17 -0.91 -23.00 16 16 C -0.69 -13.37 5.97 -39.56 -0.24 -13.60 16 17 C 0.06 0.97 9.52 -39.61 -0.38 0.59 16 18 C -0.24 -3.41 9.04 -39.43 -0.36 -3.77 16 19 C 0.21 3.51 6.67 -39.22 -0.26 3.25 16 20 O -0.28 -4.17 8.51 -41.54 -0.35 -4.53 16 21 C 0.02 0.17 9.81 101.05 0.99 1.16 16 22 C -0.10 -1.93 6.87 -79.81 -0.55 -2.48 16 23 N 0.04 0.83 4.45 34.03 0.15 0.98 16 24 O -0.18 -3.64 18.45 -29.46 -0.54 -4.18 16 25 O -0.15 -3.02 17.24 -36.49 -0.63 -3.65 16 26 C 0.07 1.41 9.03 -39.61 -0.36 1.05 16 27 H 0.20 3.00 7.80 -54.10 -0.42 2.57 16 28 H 0.12 2.37 6.41 -51.93 -0.33 2.04 16 29 H 0.09 1.57 6.95 -51.93 -0.36 1.21 16 30 H 0.28 5.77 8.31 -40.82 -0.34 5.43 16 31 H 0.15 2.27 7.61 -52.49 -0.40 1.87 16 32 H 0.15 1.54 6.30 -52.49 -0.33 1.21 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.17 3.30 7.16 -52.48 -0.38 2.93 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -28.85 337.48 -7.65 -36.50 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.95 Total: 6.74 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.26 Total: -20.93 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.47 Total: -32.87 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -3.35 Total: -59.58 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.04 Total: 12.03 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.61 Total: 53.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.85 -7.65 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281295512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.968 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds