Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47325 * 65.03025 * 3 2 1 5 5 C 1.36935 * 120.00247 * 273.26246 * 4 3 2 6 6 H 1.07995 * 120.00405 * 186.69125 * 5 4 3 7 7 C 1.38815 * 119.99753 * 6.69081 * 5 4 3 8 8 N 1.31619 * 120.00048 * 25.19011 * 7 5 4 9 9 Si 1.86796 * 120.00012 * 205.19275 * 7 5 4 10 10 H 1.48494 * 109.47315 * 90.00009 * 9 7 5 11 11 H 1.48498 * 109.47141 * 210.00100 * 9 7 5 12 12 H 1.48501 * 109.46957 * 330.00065 * 9 7 5 13 13 S 1.65604 * 119.99991 * 93.25674 * 4 3 2 14 14 O 1.42096 * 106.40307 * 156.46045 * 13 4 3 15 15 O 1.42101 * 106.40254 * 23.54307 * 13 4 3 16 16 C 1.76199 * 107.22071 * 270.00422 * 13 4 3 17 17 C 1.38284 * 119.94463 * 89.99728 * 16 13 4 18 18 C 1.38125 * 120.05375 * 180.02562 * 17 16 13 19 19 C 1.38753 * 119.94649 * 359.97438 * 18 17 16 20 20 O 1.35897 * 120.05133 * 179.97438 * 19 18 17 21 21 C 1.42891 * 117.00504 * 359.97438 * 20 19 18 22 22 C 1.38707 * 119.88635 * 0.24728 * 19 18 17 23 23 N 1.48007 * 120.02810 * 179.74730 * 22 19 18 24 24 O 1.21794 * 119.99998 * 180.02562 * 23 22 19 25 25 O 1.21805 * 119.99506 * 0.02562 * 23 22 19 26 26 C 1.38166 * 119.94248 * 359.51886 * 22 19 18 27 27 H 4.40641 * 5.51301 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47117 * 305.02694 * 3 2 1 29 29 H 1.08999 * 109.47041 * 185.02759 * 3 2 1 30 30 H 0.97003 * 120.00115 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.97069 * 0.02772 * 17 16 13 32 32 H 1.08001 * 120.02424 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47244 * 179.97438 * 21 20 19 34 34 H 1.09000 * 109.47602 * 300.00023 * 21 20 19 35 35 H 1.09000 * 109.46994 * 60.00068 * 21 20 19 36 36 H 1.08006 * 119.96983 * 180.22997 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5822 -1.2521 5 6 3.2999 -1.9374 -1.3579 6 1 3.7607 -2.3581 -2.2394 7 6 2.8751 -2.7706 -0.3321 8 7 1.9121 -2.3809 0.4761 9 14 3.6703 -4.4446 -0.0986 10 1 4.8304 -4.3179 0.8196 11 1 2.6799 -5.3864 0.4822 12 1 4.1327 -4.9605 -1.4121 13 16 3.4871 0.3979 -2.5396 14 8 4.4126 -0.3170 -3.3466 15 8 3.7572 1.6852 -2.0018 16 6 2.0139 0.5563 -3.4932 17 6 1.1226 1.5781 -3.2221 18 6 -0.0331 1.7041 -3.9679 19 6 -0.2992 0.8045 -4.9902 20 8 -1.4359 0.9260 -5.7250 21 6 -2.3130 2.0032 -5.3900 22 6 0.5942 -0.2224 -5.2572 23 7 0.3108 -1.1871 -6.3433 24 8 1.0954 -2.0889 -6.5770 25 8 -0.7072 -1.0791 -7.0034 26 6 1.7513 -0.3412 -4.5114 27 1 -1.0499 0.0001 -0.0002 28 1 3.0096 -0.5890 0.8415 29 1 3.0089 1.0245 0.0901 30 1 1.6150 -2.9633 1.1928 31 1 1.3304 2.2784 -2.4265 32 1 -0.7291 2.5021 -3.7554 33 1 -3.1791 1.9858 -6.0516 34 1 -2.6424 1.8956 -4.3566 35 1 -1.7862 2.9503 -5.5066 36 1 2.4490 -1.1384 -4.7214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281295512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -22.453639 kcal Electronic energy + Delta-G solvation = -28069.040827 eV Core-core repulsion = 23844.525398 eV Total energy + Delta-G solvation = -4224.515429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.36835 -41.42134 -38.93294 -38.17753 -37.85155 -37.63594 -36.42821 -33.86646 -33.32045 -32.93208 -31.83011 -28.62328 -28.40689 -27.59826 -25.71477 -24.02175 -23.78524 -21.08220 -20.34679 -19.86891 -19.67987 -19.17681 -18.77146 -18.54379 -18.25874 -17.65356 -17.59558 -16.99932 -16.48811 -16.16641 -15.81627 -15.33857 -15.22561 -14.96728 -14.38887 -14.38345 -14.09431 -13.61292 -13.50056 -13.13888 -12.84618 -12.75236 -12.72056 -12.69207 -12.63800 -12.47322 -12.33118 -12.31673 -12.18728 -12.03769 -11.83797 -11.44589 -11.00351 -10.85203 -10.60122 -10.17517 -10.02781 -8.47083 -5.88152 -1.26271 -0.51343 -0.19617 0.16642 0.27832 1.49738 1.54950 1.63032 1.71893 1.85025 2.08561 2.31221 2.43845 2.74195 2.82722 3.13371 3.18883 3.33267 3.50327 3.78684 3.89226 3.96081 4.14330 4.22582 4.28463 4.29639 4.51918 4.52866 4.69479 4.77741 4.95548 4.99460 5.19468 5.21111 5.36821 5.49390 5.80946 6.27005 6.49591 6.63574 7.07199 7.20915 8.42954 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.004936 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.723399 B = 5671.661737 C = 6173.464857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.148 4.148 3 C 0.229 3.771 4 N -0.791 5.791 5 C -0.262 4.262 6 H 0.116 0.884 7 C 0.006 3.994 8 N -0.821 5.821 9 Si 0.986 3.014 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.266 1.266 13 S 2.523 3.477 14 O -1.008 7.008 15 O -1.003 7.003 16 C -0.706 4.706 17 C 0.057 3.943 18 C -0.213 4.213 19 C 0.226 3.774 20 O -0.298 6.298 21 C 0.002 3.998 22 C -0.123 4.123 23 N 0.042 4.958 24 O -0.218 6.218 25 O -0.136 6.136 26 C 0.058 3.942 27 H 0.226 0.774 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.284 0.716 31 H 0.169 0.831 32 H 0.202 0.798 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 8.110 -0.809 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.105 3.895 4 N -0.613 5.613 5 C -0.411 4.411 6 H 0.134 0.866 7 C -0.207 4.207 8 N -0.458 5.458 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.191 1.191 13 S 2.623 3.377 14 O -0.998 6.998 15 O -0.992 6.992 16 C -0.785 4.785 17 C 0.038 3.962 18 C -0.233 4.233 19 C 0.175 3.825 20 O -0.208 6.208 21 C -0.091 4.091 22 C -0.209 4.209 23 N 0.555 4.445 24 O -0.419 6.419 25 O -0.360 6.360 26 C 0.038 3.962 27 H 0.243 0.757 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.186 0.814 32 H 0.219 0.781 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.990 9.045 -0.706 12.089 hybrid contribution -0.789 -1.271 -0.482 1.572 sum -8.779 7.774 -1.188 11.786 Atomic orbital electron populations 1.24950 0.96101 1.05227 1.00483 1.23516 0.94935 0.96463 1.00130 1.18595 0.84577 0.98314 0.88043 1.55586 1.71284 1.16301 1.18086 1.20387 1.31493 0.82211 1.07040 0.86637 1.26278 0.95094 1.02770 0.96587 1.70273 1.20866 1.38279 1.16430 0.85003 0.78431 0.76296 0.79408 1.18685 1.20167 1.19066 1.12460 0.78667 0.73695 0.72858 1.93325 1.63512 1.73012 1.69922 1.93313 1.86071 1.41635 1.78207 1.32504 1.29072 1.04029 1.12904 1.21384 0.89231 0.91577 0.93982 1.21823 1.01441 1.02718 0.97274 1.18859 0.85001 0.89722 0.88936 1.86397 1.28341 1.52054 1.54043 1.23805 0.93149 0.87722 1.04406 1.20833 1.02394 0.98032 0.99645 1.43479 0.99636 1.00570 1.00791 1.94544 1.45307 1.27210 1.74865 1.94474 1.15449 1.78841 1.47269 1.20533 0.91800 0.95452 0.88447 0.75686 0.87069 0.88513 0.90553 0.81400 0.78150 0.84953 0.89994 0.89768 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.65 19.25 74.32 1.43 -7.22 16 2 C -0.15 -5.75 11.25 31.13 0.35 -5.40 16 3 C 0.23 9.20 5.45 84.57 0.46 9.66 16 4 N -0.79 -34.84 2.88 -352.52 -1.02 -35.86 16 5 C -0.26 -12.13 9.48 84.03 0.80 -11.33 16 6 H 0.12 5.50 7.22 -2.91 -0.02 5.48 16 7 C 0.01 0.24 4.92 84.86 0.42 0.66 16 8 N -0.82 -35.80 8.96 21.65 0.19 -35.60 16 9 Si 0.99 35.67 29.62 68.60 2.03 37.70 16 10 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 11 H -0.28 -9.79 7.11 99.48 0.71 -9.08 16 12 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 13 S 2.52 110.20 5.65 -56.49 -0.32 109.88 16 14 O -1.01 -50.02 16.05 -128.00 -2.05 -52.07 16 15 O -1.00 -44.09 15.85 -128.00 -2.03 -46.11 16 16 C -0.71 -27.25 5.97 22.28 0.13 -27.12 16 17 C 0.06 1.76 9.52 22.25 0.21 1.97 16 18 C -0.21 -5.23 9.04 22.37 0.20 -5.03 16 19 C 0.23 6.75 6.67 22.51 0.15 6.90 16 20 O -0.30 -7.59 8.51 -71.24 -0.61 -8.19 16 21 C 0.00 0.03 9.81 113.37 1.11 1.14 16 22 C -0.12 -4.63 6.87 36.47 0.25 -4.38 16 23 N 0.04 1.67 4.45 -46.24 -0.21 1.46 16 24 O -0.22 -9.35 18.45 18.89 0.35 -9.00 16 25 O -0.14 -5.22 17.24 25.60 0.44 -4.77 16 26 C 0.06 2.34 9.03 22.25 0.20 2.54 16 27 H 0.23 6.06 7.80 -4.42 -0.03 6.03 16 28 H 0.11 4.56 6.41 -2.39 -0.02 4.55 16 29 H 0.10 3.53 6.95 -2.39 -0.02 3.52 16 30 H 0.28 11.63 8.31 -92.71 -0.77 10.86 16 31 H 0.17 4.52 7.61 -2.91 -0.02 4.49 16 32 H 0.20 2.77 6.30 -2.91 -0.02 2.75 16 33 H 0.13 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 35 H 0.08 0.72 7.66 -2.39 -0.02 0.71 16 36 H 0.15 6.37 7.16 -2.91 -0.02 6.35 16 Total: -1.00 -63.96 337.48 3.65 -60.31 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.15 Total: 19.87 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 5.72 Total: -37.61 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.03 Total: -70.00 kcal Atomic # 8 Polarization: -116.25 SS G_CDS: -3.90 Total: -120.15 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: 110.20 SS G_CDS: -0.32 Total: 109.88 kcal Total: -63.96 3.65 -60.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281295512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.857 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds