Wall clock time and date at job start Sat Apr 11 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47509 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47289 * 299.99878 * 3 2 1 6 6 H 1.48502 * 109.47377 * 59.99922 * 3 2 1 7 7 C 1.37881 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.47749 * 300.00335 * 9 7 2 11 11 O 1.42895 * 109.46664 * 60.00912 * 9 7 2 12 12 C 1.53004 * 109.46583 * 180.02562 * 9 7 2 13 13 S 1.81008 * 109.46798 * 180.02562 * 12 9 7 14 14 C 1.76197 * 99.99949 * 179.97438 * 13 12 9 15 15 N 1.31441 * 126.38270 * 359.68977 * 14 13 12 16 16 N 1.28507 * 110.07878 * 179.88120 * 15 14 13 17 17 C 1.31269 * 109.96020 * 0.38752 * 16 15 14 18 18 C 1.47843 * 126.46335 * 179.78703 * 17 16 15 19 19 C 1.39601 * 120.13221 * 197.06251 * 18 17 16 20 20 C 1.37942 * 119.87386 * 180.02562 * 19 18 17 21 21 C 1.38356 * 120.16315 * 0.02562 * 20 19 18 22 22 C 1.38451 * 120.27887 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 119.94100 * 180.02562 * 22 21 20 24 24 C 1.38100 * 120.11502 * 359.76063 * 22 21 20 25 25 N 1.36562 * 126.38022 * 179.97438 * 14 13 12 26 26 N 1.36597 * 127.17553 * 359.92520 * 25 14 13 27 27 H 0.96994 * 120.00351 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00835 * 59.99866 * 11 9 7 29 29 H 1.08993 * 109.47539 * 60.00615 * 12 9 7 30 30 H 1.08998 * 109.46982 * 300.00078 * 12 9 7 31 31 H 1.08001 * 120.06438 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.92056 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.86415 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.07961 * 180.27734 * 24 22 21 35 35 H 1.00900 * 110.99634 * 95.62916 * 26 25 14 36 36 H 1.00893 * 111.00571 * 219.58877 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8895 11 8 0.4292 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 16 1.3404 -5.2296 -0.0013 14 6 2.6901 -6.3622 -0.0019 15 7 3.9676 -6.0527 -0.0076 16 7 4.6806 -7.1218 -0.0037 17 6 3.9027 -8.1792 -0.0037 18 6 4.3398 -9.5915 -0.0043 19 6 3.4442 -10.6021 -0.3585 20 6 3.8575 -11.9182 -0.3568 21 6 5.1566 -12.2384 -0.0045 22 6 6.0502 -11.2413 0.3480 23 17 7.6784 -11.6530 0.7879 24 6 5.6502 -9.9195 0.3448 25 7 2.6040 -7.7251 -0.0021 26 7 1.4657 -8.4801 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 0.9210 -2.5291 -1.9984 29 1 2.8719 -3.6044 0.8894 30 1 2.8720 -3.6042 -0.8905 31 1 2.4294 -10.3541 -0.6326 32 1 3.1654 -12.7006 -0.6311 33 1 5.4749 -13.2704 -0.0043 34 1 6.3491 -9.1418 0.6155 35 1 1.2139 -8.7567 -0.9376 36 1 1.5665 -9.2851 0.5994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287320063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:20 Heat of formation + Delta-G solvation = 73.503972 kcal Electronic energy + Delta-G solvation = -23174.691390 eV Core-core repulsion = 19427.338911 eV Total energy + Delta-G solvation = -3747.352479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.98209 -39.72952 -37.04405 -36.63627 -35.95687 -32.93752 -32.20806 -31.37996 -30.11192 -29.91046 -29.30125 -25.44228 -24.26611 -23.61742 -22.38847 -21.62031 -21.01741 -18.84639 -17.81359 -17.53113 -17.24169 -16.71531 -16.28925 -15.65796 -15.21693 -14.82713 -14.66820 -14.36725 -14.28814 -14.16975 -14.00419 -13.74424 -12.57120 -12.52980 -12.22324 -12.17535 -12.00689 -11.65049 -11.46057 -11.25806 -11.25237 -10.95264 -10.92344 -10.71635 -10.50999 -10.23073 -9.97618 -9.79377 -9.43133 -9.21834 -9.09476 -8.65408 -8.35829 -7.25916 -6.08998 -4.28238 0.18451 0.58300 1.25225 1.59876 1.65420 2.08203 2.60703 2.72136 3.14413 3.25393 3.33970 3.38666 3.48642 4.08867 4.20940 4.32874 4.35646 4.46627 4.74001 4.92750 5.13502 5.14153 5.18591 5.39713 5.54124 5.60657 5.65313 5.82822 5.83690 6.00544 6.06783 6.09844 6.16464 6.66951 7.14381 7.51115 7.75848 8.01000 8.46111 8.73363 9.24678 9.47733 10.95166 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002150 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.804597 B =13020.406873 C =14043.952257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.567 4.567 8 H 0.062 0.938 9 C 0.244 3.756 10 H 0.068 0.932 11 O -0.560 6.560 12 C -0.126 4.126 13 S 0.036 5.964 14 C 0.206 3.794 15 N -0.290 5.290 16 N -0.246 5.246 17 C 0.161 3.839 18 C 0.013 3.987 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.103 4.103 22 C -0.027 4.027 23 Cl -0.059 7.059 24 C -0.070 4.070 25 N -0.309 5.309 26 N -0.581 5.581 27 H 0.262 0.738 28 H 0.349 0.651 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.366 0.634 36 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -27.448 -0.737 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.127 4.127 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.607 4.607 8 H 0.080 0.920 9 C 0.184 3.816 10 H 0.085 0.915 11 O -0.362 6.362 12 C -0.275 4.275 13 S 0.267 5.733 14 C -0.166 4.166 15 N -0.136 5.136 16 N -0.088 5.088 17 C -0.107 4.107 18 C 0.009 3.991 19 C -0.143 4.143 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.054 4.054 23 Cl -0.030 7.030 24 C -0.091 4.091 25 N -0.093 5.093 26 N -0.215 5.215 27 H 0.072 0.928 28 H 0.194 0.806 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.678 -26.111 0.061 26.721 hybrid contribution 1.751 -0.563 -0.704 1.969 sum 7.429 -26.673 -0.643 27.696 Atomic orbital electron populations 1.70079 1.05958 1.26672 1.46498 1.25036 0.94776 0.99263 0.93590 0.86516 0.80277 0.83305 0.77744 1.19512 1.20792 1.20778 1.21530 0.93432 0.90294 1.55399 0.91962 1.19257 0.87470 0.87875 0.86968 0.91465 1.86586 1.38226 1.96037 1.15390 1.25021 1.03488 0.92677 1.06341 1.86281 1.00585 0.96479 1.89942 1.27590 1.01017 0.84432 1.03565 1.74982 0.97890 1.18818 1.21936 1.74281 1.25360 0.93982 1.15151 1.23062 0.81528 0.95534 1.10531 1.17290 0.93948 0.86610 1.01211 1.21294 0.99257 0.92926 1.00851 1.20980 0.95618 0.95907 0.98834 1.21226 0.92902 0.99372 0.98782 1.20813 0.87400 0.94085 1.03082 1.98400 1.19636 1.93704 1.91212 1.21095 0.95182 0.95241 0.97575 1.44990 1.01724 1.05012 1.57533 1.59533 1.16168 1.28236 1.17596 0.92814 0.80643 0.88906 0.89488 0.86020 0.84130 0.84269 0.83232 0.81459 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.61 12.84 55.43 0.71 -23.90 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.08 8.76 -34.44 -0.30 -15.38 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.24 5.95 2.87 -27.88 -0.08 5.87 16 10 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.70 12.32 -35.23 -0.43 -14.13 16 12 C -0.13 -2.57 4.87 37.16 0.18 -2.39 16 13 S 0.04 0.63 21.90 -107.50 -2.35 -1.72 16 14 C 0.21 3.53 8.19 -88.18 -0.72 2.80 16 15 N -0.29 -5.48 11.59 30.71 0.36 -5.12 16 16 N -0.25 -4.24 11.98 32.60 0.39 -3.85 16 17 C 0.16 2.22 7.74 -153.75 -1.19 1.03 16 18 C 0.01 0.13 5.87 -104.98 -0.62 -0.49 16 19 C -0.12 -0.84 8.90 -39.18 -0.35 -1.19 16 20 C -0.10 -0.50 10.03 -39.65 -0.40 -0.90 16 21 C -0.10 -0.63 9.82 -39.46 -0.39 -1.02 16 22 C -0.03 -0.22 6.31 -39.55 -0.25 -0.47 16 23 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 24 C -0.07 -0.70 9.48 -39.15 -0.37 -1.07 16 25 N -0.31 -4.18 3.82 -10.37 -0.04 -4.22 16 26 N -0.58 -5.34 9.36 60.35 0.56 -4.77 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.35 7.58 9.04 45.56 0.41 8.00 16 29 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 30 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 31 H 0.12 0.57 5.22 -52.49 -0.27 0.30 16 32 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 34 H 0.15 1.61 7.95 -52.48 -0.42 1.19 16 35 H 0.37 2.43 8.59 -181.37 -1.56 0.87 16 36 H 0.37 2.41 7.34 -181.37 -1.33 1.08 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -32.64 346.62 -11.51 -44.15 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.82 Total: 5.63 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.58 Total: -11.12 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 1.98 Total: -41.86 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.43 Total: -14.13 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.35 Total: -1.72 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.64 -11.51 -44.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287320063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.657 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds