Wall clock time and date at job start Sat Apr 11 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47509 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47289 * 299.99878 * 3 2 1 6 6 H 1.48502 * 109.47377 * 59.99922 * 3 2 1 7 7 C 1.37881 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.47749 * 300.00335 * 9 7 2 11 11 O 1.42895 * 109.46664 * 60.00912 * 9 7 2 12 12 C 1.53004 * 109.46583 * 180.02562 * 9 7 2 13 13 S 1.81008 * 109.46798 * 180.02562 * 12 9 7 14 14 C 1.76197 * 99.99949 * 179.97438 * 13 12 9 15 15 N 1.31441 * 126.38270 * 359.68977 * 14 13 12 16 16 N 1.28507 * 110.07878 * 179.88120 * 15 14 13 17 17 C 1.31269 * 109.96020 * 0.38752 * 16 15 14 18 18 C 1.47843 * 126.46335 * 179.78703 * 17 16 15 19 19 C 1.39601 * 120.13221 * 197.06251 * 18 17 16 20 20 C 1.37942 * 119.87386 * 180.02562 * 19 18 17 21 21 C 1.38356 * 120.16315 * 0.02562 * 20 19 18 22 22 C 1.38451 * 120.27887 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 119.94100 * 180.02562 * 22 21 20 24 24 C 1.38100 * 120.11502 * 359.76063 * 22 21 20 25 25 N 1.36562 * 126.38022 * 179.97438 * 14 13 12 26 26 N 1.36597 * 127.17553 * 359.92520 * 25 14 13 27 27 H 0.96994 * 120.00351 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00835 * 59.99866 * 11 9 7 29 29 H 1.08993 * 109.47539 * 60.00615 * 12 9 7 30 30 H 1.08998 * 109.46982 * 300.00078 * 12 9 7 31 31 H 1.08001 * 120.06438 * 359.97438 * 19 18 17 32 32 H 1.08002 * 119.92056 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.86415 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.07961 * 180.27734 * 24 22 21 35 35 H 1.00900 * 110.99634 * 95.62916 * 26 25 14 36 36 H 1.00893 * 111.00571 * 219.58877 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8895 11 8 0.4292 -2.5746 -1.1671 12 6 2.2454 -3.6620 -0.0005 13 16 1.3404 -5.2296 -0.0013 14 6 2.6901 -6.3622 -0.0019 15 7 3.9676 -6.0527 -0.0076 16 7 4.6806 -7.1218 -0.0037 17 6 3.9027 -8.1792 -0.0037 18 6 4.3398 -9.5915 -0.0043 19 6 3.4442 -10.6021 -0.3585 20 6 3.8575 -11.9182 -0.3568 21 6 5.1566 -12.2384 -0.0045 22 6 6.0502 -11.2413 0.3480 23 17 7.6784 -11.6530 0.7879 24 6 5.6502 -9.9195 0.3448 25 7 2.6040 -7.7251 -0.0021 26 7 1.4657 -8.4801 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 0.9210 -2.5291 -1.9984 29 1 2.8719 -3.6044 0.8894 30 1 2.8720 -3.6042 -0.8905 31 1 2.4294 -10.3541 -0.6326 32 1 3.1654 -12.7006 -0.6311 33 1 5.4749 -13.2704 -0.0043 34 1 6.3491 -9.1418 0.6155 35 1 1.2139 -8.7567 -0.9376 36 1 1.5665 -9.2851 0.5994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287320063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:19 Heat of formation + Delta-G solvation = 51.878664 kcal Electronic energy + Delta-G solvation = -23175.629133 eV Core-core repulsion = 19427.338911 eV Total energy + Delta-G solvation = -3748.290222 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.050 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.13558 -40.35318 -37.95851 -37.79407 -37.44241 -34.28474 -33.75982 -31.98317 -31.70521 -31.04656 -30.40713 -27.40048 -25.15085 -24.51351 -23.37769 -22.85520 -22.46228 -19.83291 -19.24933 -18.73327 -18.24862 -17.94431 -16.98053 -16.69815 -16.45080 -16.30262 -16.17612 -15.96346 -15.60421 -15.28537 -14.81412 -14.69377 -14.26856 -13.49069 -13.39193 -13.20754 -13.09023 -12.85322 -12.81281 -12.77760 -12.72122 -12.36476 -12.06074 -12.00421 -11.91505 -11.55118 -11.52201 -11.10574 -10.76314 -10.71911 -10.32593 -10.07269 -9.88771 -8.62615 -8.16457 -6.42266 -0.54704 -0.04504 -0.00394 0.61394 0.90782 1.08898 1.18743 1.41500 1.44148 1.49119 1.56010 2.40343 2.47047 2.66881 3.10164 3.31475 3.69381 3.73909 3.87236 3.91800 4.08937 4.15708 4.22493 4.27487 4.35603 4.42507 4.50924 4.73553 4.94184 4.98044 5.07751 5.15329 5.51792 5.52932 5.54526 5.66610 5.97954 6.22116 6.66537 7.26003 7.29457 7.46490 8.88217 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002150 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.804597 B =13020.406873 C =14043.952257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.581 4.581 8 H 0.061 0.939 9 C 0.248 3.752 10 H 0.039 0.961 11 O -0.570 6.570 12 C -0.115 4.115 13 S 0.056 5.944 14 C 0.186 3.814 15 N -0.323 5.323 16 N -0.293 5.293 17 C 0.189 3.811 18 C -0.019 4.019 19 C -0.109 4.109 20 C -0.082 4.082 21 C -0.089 4.089 22 C -0.038 4.038 23 Cl -0.063 7.063 24 C -0.083 4.083 25 N -0.302 5.302 26 N -0.580 5.580 27 H 0.264 0.736 28 H 0.361 0.639 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.129 0.871 35 H 0.384 0.616 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -30.604 -1.339 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.621 4.621 8 H 0.079 0.921 9 C 0.188 3.812 10 H 0.057 0.943 11 O -0.374 6.374 12 C -0.265 4.265 13 S 0.286 5.714 14 C -0.188 4.188 15 N -0.169 5.169 16 N -0.134 5.134 17 C -0.080 4.080 18 C -0.022 4.022 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.108 4.108 22 C -0.065 4.065 23 Cl -0.034 7.034 24 C -0.104 4.104 25 N -0.083 5.083 26 N -0.219 5.219 27 H 0.073 0.927 28 H 0.206 0.794 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.147 0.853 35 H 0.206 0.794 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.383 -29.295 -0.548 29.790 hybrid contribution 1.871 0.084 -0.522 1.945 sum 7.254 -29.211 -1.070 30.118 Atomic orbital electron populations 1.70190 1.07454 1.27611 1.47796 1.25844 0.95544 1.02716 0.93175 0.85477 0.79003 0.79058 0.77850 1.19086 1.20243 1.20328 1.21877 0.93572 0.91718 1.54905 0.92125 1.18965 0.87283 0.88937 0.85983 0.94345 1.86521 1.38776 1.96144 1.15968 1.24518 1.02378 0.93772 1.05824 1.85957 0.99768 0.94697 1.90940 1.27279 1.00292 0.85846 1.05426 1.74858 0.98912 1.20415 1.22710 1.74203 1.26332 0.94645 1.18211 1.23704 0.81198 0.96454 1.06644 1.17379 0.94938 0.85345 1.04567 1.21588 0.99588 0.92786 0.98991 1.21464 0.95724 0.95989 0.96828 1.21665 0.92763 1.00093 0.96320 1.20907 0.87767 0.93879 1.03930 1.98399 1.20108 1.93563 1.91324 1.21001 0.95070 0.95813 0.98525 1.44912 1.02812 1.04233 1.56357 1.59588 1.13987 1.28905 1.19398 0.92684 0.79385 0.89747 0.89700 0.83669 0.79917 0.81552 0.85316 0.79403 0.78644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.23 12.84 21.45 0.28 -51.96 16 2 C 0.03 1.69 5.40 84.66 0.46 2.15 16 3 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.58 -31.62 8.76 25.60 0.22 -31.39 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.25 12.47 2.87 29.85 0.09 12.56 16 10 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 11 O -0.57 -28.47 12.32 -148.98 -1.84 -30.31 16 12 C -0.12 -4.87 4.87 71.98 0.35 -4.52 16 13 S 0.06 2.01 21.90 -56.49 -1.24 0.77 16 14 C 0.19 6.42 8.19 179.50 1.47 7.89 16 15 N -0.32 -12.65 11.59 -56.75 -0.66 -13.31 16 16 N -0.29 -10.45 11.98 -50.79 -0.61 -11.06 16 17 C 0.19 5.16 7.74 136.21 1.05 6.21 16 18 C -0.02 -0.36 5.87 -20.09 -0.12 -0.48 16 19 C -0.11 -1.09 8.90 22.53 0.20 -0.89 16 20 C -0.08 -0.44 10.03 22.23 0.22 -0.22 16 21 C -0.09 -0.73 9.82 22.35 0.22 -0.51 16 22 C -0.04 -0.56 6.31 22.29 0.14 -0.42 16 23 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.03 16 24 C -0.08 -1.62 9.48 22.55 0.21 -1.41 16 25 N -0.30 -7.87 3.82 -186.72 -0.71 -8.58 16 26 N -0.58 -9.19 9.36 37.02 0.35 -8.84 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.36 15.93 9.04 -74.06 -0.67 15.26 16 29 H 0.08 3.65 8.14 -2.40 -0.02 3.63 16 30 H 0.08 3.57 8.14 -2.40 -0.02 3.55 16 31 H 0.15 0.69 5.22 -2.91 -0.02 0.67 16 32 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 34 H 0.13 2.97 7.95 -2.91 -0.02 2.94 16 35 H 0.38 3.85 8.59 -210.56 -1.81 2.04 16 36 H 0.39 3.73 7.34 -210.57 -1.55 2.18 16 Total: -1.00 -73.81 346.62 -0.80 -74.61 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -2.84 Total: 15.53 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.52 Total: -11.04 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -1.36 Total: -93.75 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.84 Total: -30.31 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.24 Total: 0.77 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -73.81 -0.80 -74.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287320063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.490 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds