Wall clock time and date at job start Sat Apr 11 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46941 * 97.28533 * 3 2 1 5 5 N 1.46495 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99774 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00058 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47013 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46808 * 120.00120 * 11 9 7 14 14 H 1.48501 * 109.46891 * 240.00253 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 N 1.46496 * 109.47106 * 179.97438 * 17 15 5 19 19 C 1.35022 * 126.03269 * 125.00027 * 18 17 15 20 20 C 1.35365 * 107.72935 * 179.97438 * 19 18 17 21 21 Br 1.89100 * 126.04449 * 179.97438 * 20 19 18 22 22 C 1.39918 * 107.91328 * 359.97438 * 20 19 18 23 23 N 1.30850 * 108.20535 * 359.75941 * 22 20 19 24 24 H 1.08996 * 109.47200 * 337.28824 * 3 2 1 25 25 H 1.08997 * 109.46603 * 217.28607 * 3 2 1 26 26 H 1.09004 * 109.46898 * 59.99831 * 4 3 2 27 27 H 1.08993 * 109.47182 * 300.00170 * 4 3 2 28 28 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 29 29 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 30 30 H 0.97002 * 119.99965 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 32 32 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 33 33 H 1.07999 * 126.13839 * 359.93613 * 19 18 17 34 34 H 1.07996 * 125.90197 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 0.1838 -1.4309 5 7 4.5829 0.1851 -1.4308 6 6 5.3145 1.4441 -1.2701 7 6 5.5652 2.0560 -2.6242 8 1 5.2150 1.5567 -3.5156 9 6 6.2416 3.2532 -2.7254 10 7 6.6684 3.8609 -1.6400 11 14 6.5529 4.0112 -4.4040 12 1 5.9764 3.1366 -5.4567 13 1 5.9138 5.3500 -4.4688 14 1 8.0154 4.1497 -4.6210 15 6 5.2578 -0.9721 -1.5787 16 8 6.4706 -0.9711 -1.5792 17 6 4.5054 -2.2673 -1.7447 18 7 5.4583 -3.3709 -1.8863 19 6 5.4993 -4.4871 -1.1277 20 6 6.5201 -5.2540 -1.5775 21 35 7.0397 -6.9341 -0.8824 22 6 7.1227 -4.5837 -2.6476 23 7 6.4836 -3.4577 -2.8368 24 1 2.9719 -0.9471 0.3968 25 1 2.9710 0.8185 0.6226 26 1 2.7542 1.1316 -1.8277 27 1 2.7550 -0.6339 -2.0534 28 1 4.7248 2.1321 -0.6641 29 1 6.2670 1.2506 -0.7768 30 1 7.1446 4.7030 -1.7112 31 1 3.8785 -2.4381 -0.8695 32 1 3.8789 -2.2121 -2.6350 33 1 4.8369 -4.7252 -0.3085 34 1 7.9672 -4.9364 -3.2210 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299380735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:31 Heat of formation + Delta-G solvation = 58.075728 kcal Electronic energy + Delta-G solvation = -20730.470364 eV Core-core repulsion = 17325.268310 eV Total energy + Delta-G solvation = -3405.202054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27740 -40.61472 -37.97668 -36.71265 -35.01027 -34.34261 -32.52124 -32.16157 -30.55632 -29.42690 -27.75694 -25.32256 -24.69237 -22.35684 -21.88495 -20.05613 -18.88415 -18.42421 -18.31813 -17.82264 -16.96573 -16.51395 -16.14280 -15.67753 -15.60355 -15.14176 -14.83685 -14.48321 -14.30412 -14.23896 -14.04005 -13.61004 -13.52226 -13.31504 -13.16143 -12.91759 -12.70236 -12.55290 -12.19535 -11.95189 -11.90720 -11.79732 -11.65748 -11.01862 -10.93448 -10.60536 -10.33657 -9.51927 -9.36015 -8.20121 -6.31498 0.66009 0.84565 1.37086 1.40646 1.50112 1.60568 1.65451 1.68288 1.83024 1.89079 2.27763 2.42517 3.07690 3.13724 3.57479 3.68865 3.85965 4.00774 4.09067 4.13715 4.22175 4.52174 4.59410 4.66958 4.86815 5.06179 5.09740 5.32426 5.40726 5.57754 5.81730 5.89809 6.11199 6.60884 6.64142 6.69077 6.79446 7.31336 7.45595 8.86707 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.003149 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.592526 B = 8888.235297 C =10795.503141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.107 3.893 5 N -0.593 5.593 6 C 0.262 3.738 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.954 3.046 12 H -0.269 1.269 13 H -0.272 1.272 14 H -0.287 1.287 15 C 0.488 3.512 16 O -0.569 6.569 17 C 0.114 3.886 18 N -0.357 5.357 19 C 0.106 3.894 20 C -0.259 4.259 21 Br -0.015 7.015 22 C 0.061 3.939 23 N -0.306 5.306 24 H 0.145 0.855 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.039 0.961 29 H 0.001 0.999 30 H 0.265 0.735 31 H 0.182 0.818 32 H 0.139 0.861 33 H 0.227 0.773 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 -21.277 4.210 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.017 4.017 5 N -0.324 5.324 6 C 0.141 3.859 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.197 1.197 14 H -0.213 1.213 15 C 0.275 3.725 16 O -0.447 6.447 17 C -0.010 4.010 18 N -0.138 5.138 19 C -0.043 4.043 20 C -0.350 4.350 21 Br 0.068 6.932 22 C -0.127 4.127 23 N -0.126 5.126 24 H 0.163 0.837 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.199 0.801 32 H 0.157 0.843 33 H 0.244 0.756 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.325 -20.494 3.824 22.097 hybrid contribution 1.115 0.709 -0.552 1.432 sum -6.210 -19.784 3.272 20.993 Atomic orbital electron populations 1.81288 1.14594 1.11039 1.10000 1.29145 0.94919 0.91318 0.91734 1.19863 0.79961 1.08371 0.99731 1.21649 0.78489 1.05862 0.95727 1.48034 1.06949 1.06903 1.70523 1.18789 0.91499 0.80134 0.95451 1.21785 1.36315 1.05663 0.94000 0.92962 1.25679 0.95281 0.97700 1.00030 1.70016 1.39213 1.17862 1.29410 0.85563 0.77631 0.78538 0.80263 1.19367 1.19697 1.21341 1.21131 0.88085 0.86211 0.77115 1.90772 1.16368 1.86930 1.50582 1.22101 0.88789 0.80997 1.09110 1.48280 1.25138 1.15616 1.24738 1.23075 0.98607 0.85682 0.96918 1.21906 1.06429 0.99467 1.07176 1.96581 1.91599 1.19791 1.85224 1.24210 1.00178 0.91110 0.97230 1.77655 1.01935 1.19754 1.13300 0.83711 0.86269 0.89685 0.86837 0.94281 0.98071 0.92607 0.80098 0.84342 0.75617 0.78404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.91 18.54 20.01 0.37 -11.54 16 2 C 0.25 4.27 15.43 89.44 1.38 5.65 16 3 C -0.04 -0.49 6.03 28.79 0.17 -0.31 16 4 C 0.11 2.08 5.17 86.38 0.45 2.52 16 5 N -0.59 -19.03 2.46 -826.16 -2.03 -21.06 16 6 C 0.26 12.11 5.16 85.63 0.44 12.55 16 7 C -0.54 -28.60 9.39 25.60 0.24 -28.36 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 11 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 15 C 0.49 16.11 7.70 87.66 0.68 16.78 16 16 O -0.57 -26.65 15.30 -3.02 -0.05 -26.69 16 17 C 0.11 2.15 5.54 85.64 0.47 2.63 16 18 N -0.36 -8.80 3.40 -351.69 -1.19 -9.99 16 19 C 0.11 1.98 11.41 83.54 0.95 2.94 16 20 C -0.26 -5.70 6.53 22.01 0.14 -5.55 16 21 Br -0.01 -0.26 34.08 -20.37 -0.69 -0.96 16 22 C 0.06 1.64 12.01 85.25 1.02 2.66 16 23 N -0.31 -10.01 11.66 -56.99 -0.66 -10.67 16 24 H 0.15 0.76 7.22 -2.39 -0.02 0.75 16 25 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.96 8.07 -2.38 -0.02 1.94 16 27 H 0.11 1.37 6.44 -2.39 -0.02 1.36 16 28 H 0.04 1.77 8.07 -2.38 -0.02 1.75 16 29 H 0.00 0.06 7.42 -2.39 -0.02 0.05 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.18 1.13 7.12 -2.39 -0.02 1.11 16 32 H 0.14 2.02 7.40 -2.39 -0.02 2.01 16 33 H 0.23 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.20 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -82.83 331.53 5.61 -77.22 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: 1.14 Total: -1.79 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.42 Total: 12.64 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.23 Total: -106.16 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.96 kcal Total: -82.83 5.61 -77.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299380735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.300 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds