Wall clock time and date at job start Sat Apr 11 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47417 * 345.81033 * 3 2 1 5 5 C 1.36940 * 120.00288 * 272.43940 * 4 3 2 6 6 H 1.07997 * 120.00234 * 186.17632 * 5 4 3 7 7 C 1.38812 * 119.99853 * 6.16936 * 5 4 3 8 8 N 1.31624 * 120.00218 * 19.94389 * 7 5 4 9 9 Si 1.86794 * 120.00112 * 199.94898 * 7 5 4 10 10 H 1.48501 * 109.47527 * 59.99486 * 9 7 5 11 11 H 1.48499 * 109.47495 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47200 * 299.99828 * 9 7 5 13 13 S 1.65599 * 119.99953 * 92.43023 * 4 3 2 14 14 O 1.42095 * 106.40286 * 341.83559 * 13 4 3 15 15 O 1.42096 * 106.40424 * 208.91191 * 13 4 3 16 16 C 1.76207 * 107.21611 * 95.37661 * 13 4 3 17 17 C 1.38283 * 119.94293 * 347.92640 * 16 13 4 18 18 C 1.38121 * 120.05614 * 180.27802 * 17 16 13 19 19 C 1.38755 * 119.94429 * 359.49868 * 18 17 16 20 20 O 1.35897 * 120.06144 * 180.25432 * 19 18 17 21 21 C 1.42900 * 116.99538 * 0.25326 * 20 19 18 22 22 C 1.38719 * 119.88384 * 0.50430 * 19 18 17 23 23 C 1.38162 * 119.94702 * 359.74904 * 22 19 18 24 24 N 1.48003 * 119.97282 * 180.02562 * 23 22 19 25 25 O 1.21793 * 120.00056 * 5.18607 * 24 23 22 26 26 O 1.21797 * 119.99718 * 185.18066 * 24 23 22 27 27 H 4.40638 * 5.51401 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47043 * 225.81383 * 3 2 1 29 29 H 1.09000 * 109.47474 * 105.81156 * 3 2 1 30 30 H 0.96995 * 120.00191 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.97593 * 0.02562 * 17 16 13 32 32 H 1.07999 * 120.03253 * 179.74576 * 18 17 16 33 33 H 1.09005 * 109.47116 * 179.97438 * 21 20 19 34 34 H 1.08997 * 109.47152 * 299.99351 * 21 20 19 35 35 H 1.08997 * 109.47092 * 60.00142 * 21 20 19 36 36 H 1.08001 * 120.02319 * 179.77024 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.3381 0.3386 5 6 3.3158 -1.6898 1.6496 6 1 3.7693 -2.6383 1.8967 7 6 2.9162 -0.8271 2.6611 8 7 2.0342 0.1172 2.4105 9 14 3.6304 -1.0062 4.3778 10 1 5.1044 -0.8345 4.3212 11 1 3.0458 0.0289 5.2677 12 1 3.3093 -2.3552 4.9093 13 16 3.4688 -2.4264 -0.8642 14 8 2.8010 -1.9565 -2.0271 15 8 3.2500 -3.7165 -0.3102 16 6 5.1945 -2.3164 -1.2027 17 6 5.9338 -1.2681 -0.6862 18 6 7.2855 -1.1765 -0.9548 19 6 7.9037 -2.1432 -1.7350 20 8 9.2346 -2.0582 -1.9965 21 6 9.9372 -0.9496 -1.4313 22 6 7.1598 -3.1938 -2.2519 23 6 5.8069 -3.2780 -1.9847 24 7 5.0128 -4.3990 -2.5354 25 8 5.5671 -5.2966 -3.1440 26 8 3.8051 -4.4238 -2.3799 27 1 -1.0498 -0.0004 -0.0001 28 1 3.0089 0.7171 0.7369 29 1 3.0092 0.2808 -0.9888 30 1 1.7553 0.7202 3.1171 31 1 5.4530 -0.5181 -0.0757 32 1 7.8617 -0.3554 -0.5547 33 1 10.9880 -1.0020 -1.7162 34 1 9.5061 -0.0194 -1.8013 35 1 9.8536 -0.9821 -0.3450 36 1 7.6380 -3.9454 -2.8625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313389009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:37 Heat of formation + Delta-G solvation = 11.619483 kcal Electronic energy + Delta-G solvation = -28243.581500 eV Core-core repulsion = 24020.543593 eV Total energy + Delta-G solvation = -4223.037907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.15374 -40.51308 -37.82335 -36.66442 -36.31341 -36.10150 -34.70755 -32.14825 -31.90484 -31.17345 -30.93843 -27.93393 -26.62441 -26.39232 -23.94952 -23.37689 -22.32843 -19.85497 -18.82327 -18.56500 -18.07760 -17.68471 -17.45346 -17.28371 -16.91624 -16.31830 -16.23545 -16.09617 -14.74722 -14.58728 -14.54449 -14.25231 -13.60893 -13.51678 -13.27723 -13.17634 -12.95213 -12.58701 -11.74242 -11.72172 -11.69993 -11.48149 -11.33231 -11.18769 -11.07993 -11.03949 -10.99929 -10.74143 -10.49152 -10.40229 -10.28234 -9.82612 -9.73459 -9.19061 -8.95219 -8.85114 -8.31824 -6.43848 -4.00523 -0.26029 0.70360 1.13010 1.34275 1.37848 2.74016 3.04619 3.09022 3.15488 3.17039 3.67739 4.06326 4.18174 4.25362 4.33601 4.41703 4.52423 4.66883 4.72657 4.77374 4.79496 4.97533 5.04360 5.15914 5.34550 5.54665 5.65614 5.69409 5.70904 5.92409 6.05946 6.43137 6.68320 6.74904 6.95141 7.21759 7.36667 7.70198 8.17957 8.66342 8.97308 9.05642 10.51131 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.005400 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.174046 B = 5184.076517 C = 6429.605600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.099 4.099 3 C 0.240 3.760 4 N -0.832 5.832 5 C -0.312 4.312 6 H 0.113 0.887 7 C 0.046 3.954 8 N -0.845 5.845 9 Si 0.911 3.089 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.271 1.271 13 S 2.631 3.369 14 O -0.961 6.961 15 O -0.940 6.940 16 C -0.647 4.647 17 C 0.015 3.985 18 C -0.179 4.179 19 C 0.160 3.840 20 O -0.307 6.307 21 C 0.022 3.978 22 C -0.107 4.107 23 C 0.074 3.926 24 N 0.015 4.985 25 O -0.139 6.139 26 O -0.136 6.136 27 H 0.199 0.801 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.272 0.728 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 3.921 -4.030 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.101 4.101 3 C 0.115 3.885 4 N -0.664 5.664 5 C -0.447 4.447 6 H 0.130 0.870 7 C -0.162 4.162 8 N -0.484 5.484 9 Si 0.737 3.263 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.196 1.196 13 S 2.715 3.285 14 O -0.950 6.950 15 O -0.929 6.929 16 C -0.721 4.721 17 C -0.004 4.004 18 C -0.198 4.198 19 C 0.113 3.887 20 O -0.219 6.219 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.009 4.009 24 N 0.536 4.464 25 O -0.359 6.359 26 O -0.350 6.350 27 H 0.216 0.784 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.183 0.817 32 H 0.169 0.831 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.653 3.889 -4.342 14.845 hybrid contribution 0.688 0.132 1.151 1.347 sum 14.341 4.020 -3.191 15.232 Atomic orbital electron populations 1.24236 0.95385 1.01707 1.07083 1.22863 0.94097 0.98527 0.94630 1.18088 0.85179 0.86549 0.98645 1.53737 1.68704 1.26081 1.17848 1.19401 1.41153 1.04309 0.79822 0.86973 1.25149 0.95325 0.96163 0.99589 1.70140 1.25097 1.19023 1.34141 0.86247 0.79349 0.78627 0.82101 1.19879 1.20737 1.19584 1.05862 0.75161 0.74465 0.73056 1.93492 1.71359 1.81916 1.48226 1.93506 1.83427 1.37449 1.78527 1.32362 1.34420 0.99741 1.05605 1.20895 0.92654 0.94207 0.92642 1.21799 0.96625 1.00287 1.01136 1.18665 0.83637 0.93174 0.93209 1.86103 1.17152 1.47945 1.70734 1.23244 0.97175 0.87823 0.99064 1.20030 0.90630 0.99493 1.02607 1.20075 0.91368 0.88965 1.00506 1.43692 1.01655 1.01683 0.99349 1.94471 1.73538 1.29210 1.38632 1.94617 0.95795 1.83165 1.61429 0.78370 0.86274 0.92019 0.91667 0.81664 0.83075 0.87475 0.91904 0.91840 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.82 19.25 29.55 0.57 -5.25 16 2 C -0.10 -2.31 11.48 -37.12 -0.43 -2.74 16 3 C 0.24 5.18 4.96 -6.83 -0.03 5.15 16 4 N -0.83 -19.10 1.85 -62.78 -0.12 -19.22 16 5 C -0.31 -7.47 9.42 -15.06 -0.14 -7.61 16 6 H 0.11 2.70 7.49 -52.49 -0.39 2.30 16 7 C 0.05 1.07 5.07 -17.43 -0.09 0.98 16 8 N -0.85 -20.18 8.73 55.49 0.48 -19.69 16 9 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 13 S 2.63 61.50 3.91 -107.50 -0.42 61.08 16 14 O -0.96 -23.94 16.27 -64.75 -1.05 -24.99 16 15 O -0.94 -24.72 14.66 -67.11 -0.98 -25.71 16 16 C -0.65 -12.41 5.83 -39.56 -0.23 -12.64 16 17 C 0.02 0.23 9.56 -39.61 -0.38 -0.15 16 18 C -0.18 -2.14 9.04 -39.43 -0.36 -2.50 16 19 C 0.16 2.02 6.69 -39.21 -0.26 1.75 16 20 O -0.31 -3.17 10.50 -19.42 -0.20 -3.37 16 21 C 0.02 0.13 9.81 101.05 0.99 1.12 16 22 C -0.11 -1.59 9.50 -39.43 -0.37 -1.97 16 23 C 0.07 1.38 6.82 -79.98 -0.55 0.84 16 24 N 0.02 0.32 4.45 33.95 0.15 0.47 16 25 O -0.14 -2.63 18.46 -29.46 -0.54 -3.17 16 26 O -0.14 -3.22 13.72 -39.47 -0.54 -3.76 16 27 H 0.20 3.55 7.80 -54.10 -0.42 3.13 16 28 H 0.12 2.50 6.12 -51.93 -0.32 2.18 16 29 H 0.06 1.16 7.55 -51.93 -0.39 0.77 16 30 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 31 H 0.17 2.31 7.15 -52.49 -0.38 1.93 16 32 H 0.15 1.19 6.30 -52.49 -0.33 0.86 16 33 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 35 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 36 H 0.16 2.07 7.62 -52.49 -0.40 1.67 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -32.38 332.69 -7.51 -39.88 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.98 Total: 3.30 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -1.28 Total: -23.00 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.52 Total: -38.44 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -3.33 Total: -61.00 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: 61.50 SS G_CDS: -0.42 Total: 61.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.38 -7.51 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313389009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.502 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds