Wall clock time and date at job start Sat Apr 11 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47417 * 345.81033 * 3 2 1 5 5 C 1.36940 * 120.00288 * 272.43940 * 4 3 2 6 6 H 1.07997 * 120.00234 * 186.17632 * 5 4 3 7 7 C 1.38812 * 119.99853 * 6.16936 * 5 4 3 8 8 N 1.31624 * 120.00218 * 19.94389 * 7 5 4 9 9 Si 1.86794 * 120.00112 * 199.94898 * 7 5 4 10 10 H 1.48501 * 109.47527 * 59.99486 * 9 7 5 11 11 H 1.48499 * 109.47495 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47200 * 299.99828 * 9 7 5 13 13 S 1.65599 * 119.99953 * 92.43023 * 4 3 2 14 14 O 1.42095 * 106.40286 * 341.83559 * 13 4 3 15 15 O 1.42096 * 106.40424 * 208.91191 * 13 4 3 16 16 C 1.76207 * 107.21611 * 95.37661 * 13 4 3 17 17 C 1.38283 * 119.94293 * 347.92640 * 16 13 4 18 18 C 1.38121 * 120.05614 * 180.27802 * 17 16 13 19 19 C 1.38755 * 119.94429 * 359.49868 * 18 17 16 20 20 O 1.35897 * 120.06144 * 180.25432 * 19 18 17 21 21 C 1.42900 * 116.99538 * 0.25326 * 20 19 18 22 22 C 1.38719 * 119.88384 * 0.50430 * 19 18 17 23 23 C 1.38162 * 119.94702 * 359.74904 * 22 19 18 24 24 N 1.48003 * 119.97282 * 180.02562 * 23 22 19 25 25 O 1.21793 * 120.00056 * 5.18607 * 24 23 22 26 26 O 1.21797 * 119.99718 * 185.18066 * 24 23 22 27 27 H 4.40638 * 5.51401 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.47043 * 225.81383 * 3 2 1 29 29 H 1.09000 * 109.47474 * 105.81156 * 3 2 1 30 30 H 0.96995 * 120.00191 * 180.02562 * 8 7 5 31 31 H 1.08000 * 119.97593 * 0.02562 * 17 16 13 32 32 H 1.07999 * 120.03253 * 179.74576 * 18 17 16 33 33 H 1.09005 * 109.47116 * 179.97438 * 21 20 19 34 34 H 1.08997 * 109.47152 * 299.99351 * 21 20 19 35 35 H 1.08997 * 109.47092 * 60.00142 * 21 20 19 36 36 H 1.08001 * 120.02319 * 179.77024 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.3381 0.3386 5 6 3.3158 -1.6898 1.6496 6 1 3.7693 -2.6383 1.8967 7 6 2.9162 -0.8271 2.6611 8 7 2.0342 0.1172 2.4105 9 14 3.6304 -1.0062 4.3778 10 1 5.1044 -0.8345 4.3212 11 1 3.0458 0.0289 5.2677 12 1 3.3093 -2.3552 4.9093 13 16 3.4688 -2.4264 -0.8642 14 8 2.8010 -1.9565 -2.0271 15 8 3.2500 -3.7165 -0.3102 16 6 5.1945 -2.3164 -1.2027 17 6 5.9338 -1.2681 -0.6862 18 6 7.2855 -1.1765 -0.9548 19 6 7.9037 -2.1432 -1.7350 20 8 9.2346 -2.0582 -1.9965 21 6 9.9372 -0.9496 -1.4313 22 6 7.1598 -3.1938 -2.2519 23 6 5.8069 -3.2780 -1.9847 24 7 5.0128 -4.3990 -2.5354 25 8 5.5671 -5.2966 -3.1440 26 8 3.8051 -4.4238 -2.3799 27 1 -1.0498 -0.0004 -0.0001 28 1 3.0089 0.7171 0.7369 29 1 3.0092 0.2808 -0.9888 30 1 1.7553 0.7202 3.1171 31 1 5.4530 -0.5181 -0.0757 32 1 7.8617 -0.3554 -0.5547 33 1 10.9880 -1.0020 -1.7162 34 1 9.5061 -0.0194 -1.8013 35 1 9.8536 -0.9821 -0.3450 36 1 7.6380 -3.9454 -2.8625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313389009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:35 Heat of formation + Delta-G solvation = -9.751301 kcal Electronic energy + Delta-G solvation = -28244.508207 eV Core-core repulsion = 24020.543593 eV Total energy + Delta-G solvation = -4223.964614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -43.69975 -41.54813 -38.89732 -38.33162 -38.05549 -37.94119 -36.67887 -33.62602 -33.41708 -32.79831 -32.15542 -28.75236 -28.31944 -27.63831 -25.67865 -24.61727 -23.64905 -21.25312 -20.47509 -20.11697 -19.76750 -19.22485 -19.03084 -18.47580 -18.29528 -17.99173 -17.40194 -16.97552 -16.56363 -16.17346 -15.89538 -15.35860 -15.24232 -14.94656 -14.67257 -14.38511 -14.24482 -13.74153 -13.42728 -13.23818 -13.13268 -13.05617 -12.86301 -12.73184 -12.62938 -12.46575 -12.44407 -12.37036 -12.26662 -12.07826 -11.96310 -11.50544 -10.96704 -10.92615 -10.58342 -10.06226 -10.02463 -8.09618 -5.82629 -1.68608 -0.62395 -0.49873 -0.08424 -0.01394 1.49859 1.53099 1.59856 1.85137 1.87173 1.99572 2.38770 2.49055 2.65945 2.77071 3.07686 3.16505 3.36616 3.54896 3.60699 3.75283 3.95355 4.00306 4.22966 4.30262 4.38498 4.39224 4.49256 4.61521 4.72201 4.79530 4.99734 5.02307 5.28697 5.52596 5.67605 5.90169 6.10714 6.45821 6.96620 7.22627 7.34752 8.86052 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.005400 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.174046 B = 5184.076517 C = 6429.605600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.141 4.141 3 C 0.244 3.756 4 N -0.854 5.854 5 C -0.350 4.350 6 H 0.097 0.903 7 C 0.013 3.987 8 N -0.883 5.883 9 Si 0.970 3.030 10 H -0.253 1.253 11 H -0.282 1.282 12 H -0.287 1.287 13 S 2.679 3.321 14 O -0.989 6.989 15 O -0.984 6.984 16 C -0.677 4.677 17 C 0.020 3.980 18 C -0.157 4.157 19 C 0.185 3.815 20 O -0.305 6.305 21 C 0.003 3.997 22 C -0.098 4.098 23 C 0.051 3.949 24 N 0.011 4.989 25 O -0.071 6.071 26 O -0.239 6.239 27 H 0.230 0.770 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.268 0.732 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.520 4.995 -4.701 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.144 4.144 3 C 0.119 3.881 4 N -0.687 5.687 5 C -0.480 4.480 6 H 0.114 0.886 7 C -0.191 4.191 8 N -0.522 5.522 9 Si 0.795 3.205 10 H -0.178 1.178 11 H -0.208 1.208 12 H -0.213 1.213 13 S 2.768 3.232 14 O -0.979 6.979 15 O -0.973 6.973 16 C -0.762 4.762 17 C 0.000 4.000 18 C -0.176 4.176 19 C 0.137 3.863 20 O -0.216 6.216 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.033 4.033 24 N 0.529 4.471 25 O -0.313 6.313 26 O -0.428 6.428 27 H 0.247 0.753 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.195 0.805 32 H 0.221 0.779 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 18.249 5.089 -4.820 19.549 hybrid contribution -0.277 -0.395 0.934 1.051 sum 17.972 4.694 -3.887 18.977 Atomic orbital electron populations 1.25154 0.96605 1.00765 1.06413 1.23788 0.95641 0.99509 0.95427 1.18307 0.84338 0.85698 0.99771 1.53142 1.73605 1.25126 1.16864 1.19281 1.42883 1.05268 0.80527 0.88554 1.25697 0.95289 0.96220 1.01924 1.70247 1.27108 1.20364 1.34465 0.85375 0.79684 0.77293 0.78196 1.17768 1.20767 1.21264 1.02299 0.75419 0.73059 0.72389 1.93458 1.72752 1.82191 1.49521 1.93460 1.84753 1.39800 1.79333 1.31161 1.30700 1.03631 1.10677 1.21195 0.94247 0.92813 0.91709 1.22261 0.94997 1.01028 0.99285 1.18713 0.84829 0.91676 0.91117 1.86158 1.15352 1.49738 1.70393 1.23762 0.98102 0.87030 1.00121 1.20342 0.88757 1.00637 1.02088 1.20213 0.92610 0.88430 1.02006 1.44051 1.01574 1.02314 0.99141 1.94384 1.72930 1.28576 1.35387 1.94654 0.97211 1.84975 1.65962 0.75335 0.85648 0.90033 0.92143 0.80547 0.77903 0.84991 0.89992 0.90287 0.79424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.28 19.25 74.32 1.43 -10.85 16 2 C -0.14 -6.90 11.48 31.13 0.36 -6.54 16 3 C 0.24 10.89 4.96 84.57 0.42 11.31 16 4 N -0.85 -40.92 1.85 -352.52 -0.65 -41.57 16 5 C -0.35 -17.59 9.42 84.03 0.79 -16.80 16 6 H 0.10 4.95 7.49 -2.91 -0.02 4.93 16 7 C 0.01 0.60 5.07 84.86 0.43 1.03 16 8 N -0.88 -43.88 8.73 21.65 0.19 -43.69 16 9 Si 0.97 38.33 29.60 68.60 2.03 40.36 16 10 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 13 S 2.68 131.20 3.91 -56.49 -0.22 130.98 16 14 O -0.99 -51.85 16.27 -120.75 -1.96 -53.81 16 15 O -0.98 -55.33 14.66 -118.50 -1.74 -57.07 16 16 C -0.68 -25.70 5.83 22.28 0.13 -25.57 16 17 C 0.02 0.55 9.56 22.25 0.21 0.76 16 18 C -0.16 -2.88 9.04 22.37 0.20 -2.68 16 19 C 0.19 3.63 6.69 22.51 0.15 3.78 16 20 O -0.30 -4.30 10.50 -92.39 -0.97 -5.27 16 21 C 0.00 0.02 9.81 113.37 1.11 1.13 16 22 C -0.10 -2.51 9.50 22.37 0.21 -2.29 16 23 C 0.05 1.83 6.82 36.36 0.25 2.08 16 24 N 0.01 0.47 4.45 -46.51 -0.21 0.26 16 25 O -0.07 -2.55 18.46 18.90 0.35 -2.20 16 26 O -0.24 -12.00 13.72 28.46 0.39 -11.61 16 27 H 0.23 8.30 7.80 -4.43 -0.03 8.27 16 28 H 0.13 5.45 6.12 -2.39 -0.01 5.44 16 29 H 0.08 3.16 7.55 -2.39 -0.02 3.14 16 30 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 31 H 0.18 4.59 7.15 -2.91 -0.02 4.57 16 32 H 0.20 1.64 6.30 -2.91 -0.02 1.62 16 33 H 0.13 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.08 0.19 7.65 -2.39 -0.02 0.17 16 35 H 0.08 0.24 7.67 -2.39 -0.02 0.22 16 36 H 0.19 3.82 7.62 -2.91 -0.02 3.80 16 Total: -1.00 -77.88 332.69 4.05 -73.83 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.14 Total: 14.43 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 5.70 Total: -44.64 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -0.67 Total: -85.00 kcal Atomic # 8 Polarization: -126.02 SS G_CDS: -3.93 Total: -129.96 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: 131.20 SS G_CDS: -0.22 Total: 130.98 kcal Total: -77.88 4.05 -73.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313389009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.080 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds