Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38412 * 119.84497 * 2 1 4 4 C 1.37907 * 120.17509 * 179.97438 * 3 2 1 5 5 C 1.39621 * 119.86039 * 0.02562 * 4 3 2 6 6 C 1.47792 * 120.15028 * 179.97438 * 5 4 3 7 7 O 1.21561 * 119.99428 * 180.02562 * 6 5 4 8 8 N 1.34766 * 120.00154 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00296 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47457 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00243 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99805 * 179.97438 * 10 9 8 13 13 C 1.37110 * 119.99709 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99858 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99766 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00061 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99571 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47359 * 60.00372 * 17 15 13 19 19 H 1.48504 * 109.46800 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47470 * 299.99825 * 17 15 13 21 21 C 1.39667 * 119.69703 * 359.97438 * 5 4 3 22 22 Br 1.89100 * 120.08778 * 179.97438 * 21 5 4 23 23 C 1.38114 * 119.82165 * 0.25192 * 21 5 4 24 24 H 1.09004 * 109.46944 * 89.99944 * 1 2 3 25 25 H 1.09006 * 109.47309 * 209.99858 * 1 2 3 26 26 H 1.08997 * 109.47344 * 330.00001 * 1 2 3 27 27 H 1.07996 * 119.91400 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.07280 * 179.97438 * 4 3 2 29 29 H 0.97007 * 120.00173 * 359.97438 * 8 6 5 30 30 H 1.09008 * 109.46868 * 299.99596 * 9 8 6 31 31 H 1.09000 * 109.47500 * 59.99483 * 9 8 6 32 32 H 0.96996 * 120.00582 * 359.97438 * 12 10 9 33 33 H 0.97002 * 119.99917 * 180.02562 * 16 15 13 34 34 H 1.08000 * 119.93340 * 179.72532 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5748 1.2085 0.0005 5 6 4.2770 0.0017 0.0005 6 6 5.7549 0.0027 0.0005 7 8 6.3633 -1.0497 0.0001 8 7 6.4279 1.1703 0.0011 9 6 7.8929 1.1713 0.0005 10 6 8.3943 2.5925 0.0006 11 8 7.6055 3.5138 0.0006 12 7 9.7192 2.8396 0.0007 13 6 10.1753 4.1326 0.0013 14 1 9.4729 4.9530 0.0022 15 6 11.5413 4.3874 0.0019 16 7 12.3959 3.3891 0.0014 17 14 12.1627 6.1489 0.0021 18 1 11.6667 6.8487 1.2143 19 1 13.6477 6.1499 0.0034 20 1 11.6678 6.8486 -1.2107 21 6 3.5762 -1.2065 0.0005 22 35 4.5160 -2.8475 -0.0002 23 6 2.1951 -1.1995 -0.0047 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6519 2.1335 -0.0004 28 1 4.1106 2.1462 0.0001 29 1 5.9423 2.0101 0.0011 30 1 8.2569 0.6572 0.8901 31 1 8.2563 0.6583 -0.8899 32 1 10.3500 2.1028 0.0010 33 1 13.3495 3.5670 0.0022 34 1 1.6515 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343513679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = -38.987255 kcal Electronic energy + Delta-G solvation = -20228.715768 eV Core-core repulsion = 16787.011996 eV Total energy + Delta-G solvation = -3441.703772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30873 -38.83272 -37.95546 -34.54611 -33.78786 -33.34236 -32.14183 -31.38475 -29.44639 -28.56040 -26.91392 -24.52998 -22.94196 -22.17476 -20.27730 -19.64932 -18.35095 -17.81389 -16.23550 -15.79410 -15.34002 -15.32346 -15.03702 -14.90371 -14.36787 -14.31221 -13.88836 -13.79626 -13.76294 -13.25052 -12.65362 -12.58567 -12.21608 -11.95352 -11.87047 -11.64690 -11.36980 -11.11506 -10.83001 -10.81520 -10.51733 -10.32060 -9.64130 -9.13886 -8.96703 -8.86859 -8.67893 -8.65441 -8.11722 -6.52649 -3.94891 0.52811 0.91468 1.60094 2.79602 3.12763 3.20164 3.22029 3.30395 3.60455 3.73344 4.09879 4.39039 4.45542 4.69494 4.84964 4.85491 4.95950 5.11773 5.15845 5.22466 5.32682 5.49865 5.66020 5.80463 5.89725 5.94459 5.95427 6.05498 6.12866 6.44821 6.63907 7.44532 7.75243 7.90215 8.38090 8.44287 9.02930 9.37602 9.85289 10.64120 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002690 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.168886 B =10407.139599 C =11733.860652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.115 4.115 4 C -0.074 4.074 5 C -0.112 4.112 6 C 0.543 3.457 7 O -0.516 6.516 8 N -0.701 5.701 9 C 0.110 3.890 10 C 0.428 3.572 11 O -0.599 6.599 12 N -0.548 5.548 13 C -0.306 4.306 14 H 0.105 0.895 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.040 4.040 22 Br -0.012 7.012 23 C -0.105 4.105 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.433 -10.828 -0.032 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.093 4.093 5 C -0.117 4.117 6 C 0.329 3.671 7 O -0.393 6.393 8 N -0.356 5.356 9 C -0.017 4.017 10 C 0.213 3.787 11 O -0.486 6.486 12 N -0.182 5.182 13 C -0.436 4.436 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.121 4.121 22 Br 0.075 6.925 23 C -0.125 4.125 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.247 0.753 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.873 -11.585 -0.032 23.872 hybrid contribution 0.453 1.246 -0.003 1.326 sum -20.419 -10.339 -0.035 22.888 Atomic orbital electron populations 1.20859 0.90264 1.03349 1.02876 1.20115 0.96583 0.92569 0.96976 1.21131 0.93851 0.98094 1.00288 1.21464 0.94563 0.97195 0.96099 1.19787 0.93989 0.92957 1.04960 1.18088 0.86866 0.84213 0.77979 1.90945 1.69356 1.29968 1.49014 1.45629 1.07101 1.08932 1.73926 1.20966 0.80221 0.97052 1.03463 1.19726 0.83803 0.89466 0.85671 1.90484 1.55069 1.45500 1.57532 1.41789 1.04709 1.09253 1.62481 1.19684 0.91389 0.84046 1.48442 0.87711 1.25330 0.95698 0.99916 0.96730 1.69608 1.03164 1.31527 1.49126 0.85870 0.77399 0.81522 0.79161 1.19764 1.20837 1.19756 1.21973 0.94503 0.92568 1.03051 1.96777 1.77110 1.21770 1.96867 1.20962 0.91578 0.98755 1.01164 0.90544 0.91093 0.90939 0.84712 0.84218 0.75282 0.89612 0.89622 0.76992 0.91500 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.00 36.00 0.36 -0.28 16 2 C -0.06 -0.53 5.89 -104.54 -0.62 -1.14 16 3 C -0.12 -1.05 9.68 -39.64 -0.38 -1.43 16 4 C -0.07 -0.84 9.54 -39.19 -0.37 -1.21 16 5 C -0.11 -1.55 5.88 -104.94 -0.62 -2.16 16 6 C 0.54 8.98 7.76 -12.36 -0.10 8.89 16 7 O -0.52 -9.59 13.48 5.31 0.07 -9.51 16 8 N -0.70 -11.85 5.48 -62.45 -0.34 -12.19 16 9 C 0.11 2.04 6.15 -5.20 -0.03 2.00 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 11 O -0.60 -15.12 15.24 5.55 0.08 -15.03 16 12 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 13 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 14 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 16 N -0.89 -23.84 13.05 55.50 0.72 -23.11 16 17 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C -0.04 -0.51 6.26 -39.09 -0.24 -0.76 16 22 Br -0.01 -0.17 30.40 -68.01 -2.07 -2.23 16 23 C -0.10 -1.04 9.42 -39.61 -0.37 -1.42 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 28 H 0.14 1.48 6.41 -52.49 -0.34 1.14 16 29 H 0.41 6.67 5.47 -40.82 -0.22 6.44 16 30 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 33 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -31.07 319.36 -7.84 -38.91 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -3.35 Total: 12.21 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.70 Total: 4.31 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.32 Total: -48.89 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.16 Total: -24.55 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.07 Total: -2.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.07 -7.84 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.077 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds