Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38412 * 119.84497 * 2 1 4 4 C 1.37907 * 120.17509 * 179.97438 * 3 2 1 5 5 C 1.39621 * 119.86039 * 0.02562 * 4 3 2 6 6 C 1.47792 * 120.15028 * 179.97438 * 5 4 3 7 7 O 1.21561 * 119.99428 * 180.02562 * 6 5 4 8 8 N 1.34766 * 120.00154 * 0.02562 * 6 5 4 9 9 C 1.46498 * 120.00296 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47457 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00243 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99805 * 179.97438 * 10 9 8 13 13 C 1.37110 * 119.99709 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99858 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99766 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00061 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99571 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47359 * 60.00372 * 17 15 13 19 19 H 1.48504 * 109.46800 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47470 * 299.99825 * 17 15 13 21 21 C 1.39667 * 119.69703 * 359.97438 * 5 4 3 22 22 Br 1.89100 * 120.08778 * 179.97438 * 21 5 4 23 23 C 1.38114 * 119.82165 * 0.25192 * 21 5 4 24 24 H 1.09004 * 109.46944 * 89.99944 * 1 2 3 25 25 H 1.09006 * 109.47309 * 209.99858 * 1 2 3 26 26 H 1.08997 * 109.47344 * 330.00001 * 1 2 3 27 27 H 1.07996 * 119.91400 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.07280 * 179.97438 * 4 3 2 29 29 H 0.97007 * 120.00173 * 359.97438 * 8 6 5 30 30 H 1.09008 * 109.46868 * 299.99596 * 9 8 6 31 31 H 1.09000 * 109.47500 * 59.99483 * 9 8 6 32 32 H 0.96996 * 120.00582 * 359.97438 * 12 10 9 33 33 H 0.97002 * 119.99917 * 180.02562 * 16 15 13 34 34 H 1.08000 * 119.93340 * 179.72532 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5748 1.2085 0.0005 5 6 4.2770 0.0017 0.0005 6 6 5.7549 0.0027 0.0005 7 8 6.3633 -1.0497 0.0001 8 7 6.4279 1.1703 0.0011 9 6 7.8929 1.1713 0.0005 10 6 8.3943 2.5925 0.0006 11 8 7.6055 3.5138 0.0006 12 7 9.7192 2.8396 0.0007 13 6 10.1753 4.1326 0.0013 14 1 9.4729 4.9530 0.0022 15 6 11.5413 4.3874 0.0019 16 7 12.3959 3.3891 0.0014 17 14 12.1627 6.1489 0.0021 18 1 11.6667 6.8487 1.2143 19 1 13.6477 6.1499 0.0034 20 1 11.6678 6.8486 -1.2107 21 6 3.5762 -1.2065 0.0005 22 35 4.5160 -2.8475 -0.0002 23 6 2.1951 -1.1995 -0.0047 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6519 2.1335 -0.0004 28 1 4.1106 2.1462 0.0001 29 1 5.9423 2.0101 0.0011 30 1 8.2569 0.6572 0.8901 31 1 8.2563 0.6583 -0.8899 32 1 10.3500 2.1028 0.0010 33 1 13.3495 3.5670 0.0022 34 1 1.6515 -2.1327 -0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343513679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = -59.593289 kcal Electronic energy + Delta-G solvation = -20229.609313 eV Core-core repulsion = 16787.011996 eV Total energy + Delta-G solvation = -3442.597317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43573 -40.28204 -39.37427 -36.28482 -35.41704 -34.15201 -33.40497 -33.02447 -30.33544 -29.78150 -28.06148 -26.33279 -23.78009 -23.15207 -21.41043 -21.38709 -20.12863 -19.26707 -17.54653 -17.26465 -16.78403 -16.60938 -16.13700 -16.13110 -15.90274 -15.60606 -15.43745 -14.69660 -14.66020 -14.50509 -13.92438 -13.71030 -13.54744 -13.15187 -13.10276 -12.89199 -12.70794 -12.47645 -12.14554 -12.12723 -11.92504 -11.73909 -11.56747 -10.57572 -10.26582 -10.10177 -10.02844 -9.93559 -9.67737 -8.51514 -6.02010 -0.38232 0.10566 0.66053 1.37726 1.42508 1.53510 1.74111 1.90187 1.95068 2.30752 2.63459 3.09770 3.15680 3.53895 3.65987 3.86947 4.15466 4.17807 4.23017 4.33302 4.41842 4.42490 4.65030 4.83994 4.88244 5.00716 5.12246 5.20820 5.24747 5.37556 5.42735 5.73022 5.90711 6.42005 6.48748 7.02207 7.08804 7.43005 7.92779 8.65191 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002690 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.168886 B =10407.139599 C =11733.860652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.111 4.111 4 C -0.078 4.078 5 C -0.141 4.141 6 C 0.542 3.458 7 O -0.542 6.542 8 N -0.703 5.703 9 C 0.123 3.877 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.559 5.559 13 C -0.338 4.338 14 H 0.088 0.912 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.269 1.269 21 C -0.055 4.055 22 Br -0.031 7.031 23 C -0.105 4.105 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.411 0.589 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.508 -10.234 -0.034 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.129 4.129 4 C -0.097 4.097 5 C -0.146 4.146 6 C 0.330 3.670 7 O -0.421 6.421 8 N -0.358 5.358 9 C -0.004 4.004 10 C 0.220 3.780 11 O -0.511 6.511 12 N -0.194 5.194 13 C -0.467 4.467 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.557 5.557 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.135 4.135 22 Br 0.056 6.944 23 C -0.125 4.125 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.160 0.840 29 H 0.250 0.750 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.965 -11.006 -0.034 25.466 hybrid contribution 0.935 1.043 -0.004 1.401 sum -22.030 -9.963 -0.037 24.178 Atomic orbital electron populations 1.20970 0.87445 1.04755 1.04096 1.20559 0.98461 0.91676 0.94250 1.21511 0.92905 0.99743 0.98787 1.21583 0.95750 0.96323 0.96055 1.19654 0.92198 0.94438 1.08280 1.18548 0.88170 0.83407 0.76886 1.90922 1.70270 1.30634 1.50267 1.45621 1.06257 1.09453 1.74435 1.20777 0.81421 0.93883 1.04350 1.20370 0.83038 0.90936 0.83634 1.90458 1.55586 1.47014 1.58084 1.41842 1.05456 1.08752 1.63340 1.19721 0.91878 0.84634 1.50502 0.89440 1.26147 0.95355 1.03913 0.95727 1.69679 1.03544 1.33246 1.49190 0.84924 0.77207 0.76684 0.79159 1.19412 1.19679 1.19404 1.22123 0.95581 0.91477 1.04364 1.96742 1.77835 1.22827 1.96998 1.21265 0.90414 1.00435 1.00384 0.89183 0.89923 0.89419 0.81664 0.84049 0.74972 0.88675 0.88685 0.76714 0.91049 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.00 71.23 0.71 -0.06 16 2 C -0.05 -0.67 5.89 -19.81 -0.12 -0.79 16 3 C -0.11 -1.70 9.68 22.23 0.22 -1.49 16 4 C -0.08 -1.67 9.54 22.53 0.21 -1.45 16 5 C -0.14 -3.85 5.88 -20.07 -0.12 -3.97 16 6 C 0.54 18.13 7.76 86.77 0.67 18.80 16 7 O -0.54 -20.49 13.48 -3.91 -0.05 -20.54 16 8 N -0.70 -23.94 5.48 -469.77 -2.57 -26.51 16 9 C 0.12 4.58 6.15 85.63 0.53 5.11 16 10 C 0.43 20.03 7.85 87.66 0.69 20.72 16 11 O -0.62 -31.93 15.24 -3.05 -0.05 -31.98 16 12 N -0.56 -28.13 5.29 -306.98 -1.62 -29.75 16 13 C -0.34 -18.60 9.68 84.04 0.81 -17.78 16 14 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 16 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 17 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 C -0.05 -1.37 6.26 22.59 0.14 -1.23 16 22 Br -0.03 -0.84 30.40 -20.37 -0.62 -1.46 16 23 C -0.11 -1.88 9.42 22.25 0.21 -1.67 16 24 H 0.09 0.44 8.14 -2.38 -0.02 0.43 16 25 H 0.08 0.41 8.08 -2.38 -0.02 0.39 16 26 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.14 2.90 6.41 -2.91 -0.02 2.88 16 29 H 0.41 13.53 5.47 -92.70 -0.51 13.03 16 30 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 31 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 33 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.36 319.36 1.75 -65.61 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.07 Total: 33.46 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 4.43 Total: 16.11 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.91 Total: -104.86 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.10 Total: -52.52 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -0.62 Total: -1.46 kcal Total: -67.36 1.75 -65.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.018 kcal (2) G-P(sol) polarization free energy of solvation -67.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds