Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38325 * 119.93307 * 2 1 4 4 C 1.38376 * 120.30863 * 179.97438 * 3 2 1 5 5 C 1.37946 * 120.17382 * 0.25596 * 4 3 2 6 6 C 1.39587 * 119.86344 * 359.46704 * 5 4 3 7 7 C 1.47782 * 120.15545 * 180.27735 * 6 5 4 8 8 O 1.21558 * 120.00207 * 180.25567 * 7 6 5 9 9 N 1.34782 * 120.00004 * 0.25286 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46805 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00449 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99616 * 179.97438 * 11 10 9 14 14 C 1.37093 * 119.99811 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99822 * 0.02562 * 14 13 11 16 16 C 1.38944 * 120.00153 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00101 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47033 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47109 * 120.00048 * 18 16 14 21 21 H 1.48499 * 109.47022 * 240.00251 * 18 16 14 22 22 C 1.38071 * 119.92941 * 179.97438 * 2 1 3 23 23 Br 1.89096 * 120.08974 * 0.02832 * 22 2 1 24 24 H 1.08998 * 109.46936 * 90.00526 * 1 2 3 25 25 H 1.09003 * 109.47400 * 210.00476 * 1 2 3 26 26 H 1.08999 * 109.46890 * 330.00544 * 1 2 3 27 27 H 1.07995 * 119.84820 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.90958 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.07039 * 179.72274 * 5 4 3 30 30 H 0.96996 * 119.99402 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.46876 * 299.99603 * 10 9 7 32 32 H 1.08995 * 109.47380 * 59.99783 * 10 9 7 33 33 H 0.96996 * 119.99766 * 0.02562 * 13 11 10 34 34 H 0.97002 * 120.00149 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1987 0.0000 4 6 3.5810 1.2078 0.0005 5 6 4.2821 0.0198 -0.0043 6 6 3.5929 -1.1940 0.0016 7 6 4.3376 -2.4705 0.0027 8 8 3.7347 -3.5260 0.0031 9 7 5.6854 -2.4644 0.0032 10 6 6.4237 -3.7298 0.0037 11 6 7.9040 -3.4477 0.0036 12 8 8.3032 -2.3023 0.0026 13 7 8.7845 -4.4682 0.0045 14 6 10.1312 -4.2116 0.0039 15 1 10.4865 -3.1917 0.0030 16 6 11.0389 -5.2635 0.0043 17 7 10.6065 -6.5045 0.0048 18 14 12.8739 -4.9139 0.0027 19 1 13.0981 -3.4459 0.0016 20 1 13.4920 -5.5077 1.2153 21 1 13.4903 -5.5101 -1.2097 22 6 2.1959 -1.1966 0.0005 23 35 1.2510 -2.8345 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6537 2.1319 -0.0004 28 1 4.1133 2.1475 0.0001 29 1 5.3620 0.0289 -0.0084 30 1 6.1665 -1.6222 0.0032 31 1 6.1626 -4.3023 0.8938 32 1 6.1632 -4.3028 -0.8862 33 1 8.4652 -5.3841 0.0049 34 1 11.2402 -7.2389 0.0055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -36.846617 kcal Electronic energy + Delta-G solvation = -20325.742504 eV Core-core repulsion = 16884.131557 eV Total energy + Delta-G solvation = -3441.610947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31696 -38.82621 -37.94569 -34.57804 -33.88539 -33.19594 -32.22923 -31.39228 -29.72027 -27.83701 -26.97880 -24.79088 -23.38563 -21.85004 -20.13765 -19.63294 -18.24415 -17.64970 -16.35469 -16.11051 -15.55024 -15.35762 -14.95757 -14.80178 -14.37587 -14.36457 -13.90836 -13.70373 -13.62270 -13.16812 -12.59391 -12.41910 -12.21984 -11.94785 -11.87341 -11.65727 -11.48304 -11.15655 -10.90411 -10.68668 -10.42145 -10.33189 -9.66544 -9.17820 -8.88834 -8.81158 -8.71094 -8.65685 -8.11962 -6.53069 -3.95159 0.55625 0.89585 1.61847 2.81445 3.09136 3.20260 3.24271 3.30893 3.60577 3.72914 4.09658 4.39591 4.51807 4.65818 4.83589 4.91413 4.96317 5.15613 5.22039 5.30389 5.34142 5.44121 5.78666 5.83026 5.90896 5.94957 6.01703 6.05147 6.08952 6.45584 6.63380 7.44706 7.74545 7.90328 8.37309 8.43874 9.02908 9.37417 9.84980 10.63833 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002660 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.905895 B =10523.321910 C =11584.780000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C -0.096 4.096 4 C -0.109 4.109 5 C -0.085 4.085 6 C -0.101 4.101 7 C 0.543 3.457 8 O -0.515 6.515 9 N -0.701 5.701 10 C 0.110 3.890 11 C 0.428 3.572 12 O -0.599 6.599 13 N -0.548 5.548 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.932 3.068 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.048 4.048 23 Br -0.010 7.010 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.408 0.592 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.713 12.183 -0.029 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C -0.115 4.115 4 C -0.128 4.128 5 C -0.105 4.105 6 C -0.106 4.106 7 C 0.328 3.672 8 O -0.392 6.392 9 N -0.356 5.356 10 C -0.017 4.017 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.434 4.434 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.129 4.129 23 Br 0.077 6.923 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.247 0.753 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.086 11.325 -0.029 23.934 hybrid contribution 1.367 0.290 -0.011 1.398 sum -19.718 11.615 -0.039 22.885 Atomic orbital electron populations 1.20988 0.89962 1.03814 1.03253 1.19778 0.96831 0.91313 0.99295 1.21213 0.94309 0.97217 0.98743 1.21235 0.94175 0.98371 0.98997 1.21467 1.00681 0.91183 0.97142 1.19792 0.92527 0.94364 1.03924 1.18091 0.82260 0.88826 0.78018 1.90943 1.67442 1.31887 1.48939 1.45634 1.05425 1.10618 1.73881 1.20968 0.91174 0.86096 1.03470 1.19731 0.86965 0.86305 0.85641 1.90488 1.79455 1.21107 1.57491 1.41800 1.06214 1.07774 1.62501 1.19777 0.80343 0.95113 1.48177 0.87608 1.25333 1.01024 0.94602 0.96773 1.69624 1.36024 0.98455 1.49306 0.85759 0.81603 0.78886 0.77846 1.19120 1.20598 1.20594 1.21891 0.93468 0.93003 1.04553 1.96732 1.71921 1.26852 1.96801 0.90355 0.90355 0.90900 0.84849 0.84656 0.84300 0.75256 0.89604 0.89610 0.77000 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.55 36.01 0.34 -0.59 16 2 C -0.07 -0.71 5.88 -104.65 -0.61 -1.32 16 3 C -0.10 -0.81 9.69 -39.50 -0.38 -1.19 16 4 C -0.11 -0.98 10.03 -39.64 -0.40 -1.37 16 5 C -0.09 -0.97 9.54 -39.19 -0.37 -1.34 16 6 C -0.10 -1.40 5.88 -104.94 -0.62 -2.02 16 7 C 0.54 8.98 7.76 -12.36 -0.10 8.89 16 8 O -0.52 -9.56 13.48 5.31 0.07 -9.49 16 9 N -0.70 -11.84 5.48 -62.45 -0.34 -12.19 16 10 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 11 C 0.43 9.74 7.85 -10.98 -0.09 9.65 16 12 O -0.60 -15.11 15.24 5.55 0.08 -15.03 16 13 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 14 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 15 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -23.82 13.05 55.50 0.72 -23.09 16 18 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.05 -0.62 6.25 -39.09 -0.24 -0.87 16 23 Br -0.01 -0.14 28.47 -68.01 -1.94 -2.07 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.63 6.64 -51.93 -0.34 0.29 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.14 1.48 6.40 -52.49 -0.34 1.14 16 30 H 0.41 6.68 5.47 -40.82 -0.22 6.45 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -31.14 316.15 -7.73 -38.87 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -3.27 Total: 12.38 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.74 Total: 4.03 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.32 Total: -48.86 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.16 Total: -24.52 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -1.94 Total: -2.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.14 -7.73 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.022 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds