Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38325 * 119.93307 * 2 1 4 4 C 1.38376 * 120.30863 * 179.97438 * 3 2 1 5 5 C 1.37946 * 120.17382 * 0.25596 * 4 3 2 6 6 C 1.39587 * 119.86344 * 359.46704 * 5 4 3 7 7 C 1.47782 * 120.15545 * 180.27735 * 6 5 4 8 8 O 1.21558 * 120.00207 * 180.25567 * 7 6 5 9 9 N 1.34782 * 120.00004 * 0.25286 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46805 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00449 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99616 * 179.97438 * 11 10 9 14 14 C 1.37093 * 119.99811 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99822 * 0.02562 * 14 13 11 16 16 C 1.38944 * 120.00153 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00101 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47033 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47109 * 120.00048 * 18 16 14 21 21 H 1.48499 * 109.47022 * 240.00251 * 18 16 14 22 22 C 1.38071 * 119.92941 * 179.97438 * 2 1 3 23 23 Br 1.89096 * 120.08974 * 0.02832 * 22 2 1 24 24 H 1.08998 * 109.46936 * 90.00526 * 1 2 3 25 25 H 1.09003 * 109.47400 * 210.00476 * 1 2 3 26 26 H 1.08999 * 109.46890 * 330.00544 * 1 2 3 27 27 H 1.07995 * 119.84820 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.90958 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.07039 * 179.72274 * 5 4 3 30 30 H 0.96996 * 119.99402 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.46876 * 299.99603 * 10 9 7 32 32 H 1.08995 * 109.47380 * 59.99783 * 10 9 7 33 33 H 0.96996 * 119.99766 * 0.02562 * 13 11 10 34 34 H 0.97002 * 120.00149 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1987 0.0000 4 6 3.5810 1.2078 0.0005 5 6 4.2821 0.0198 -0.0043 6 6 3.5929 -1.1940 0.0016 7 6 4.3376 -2.4705 0.0027 8 8 3.7347 -3.5260 0.0031 9 7 5.6854 -2.4644 0.0032 10 6 6.4237 -3.7298 0.0037 11 6 7.9040 -3.4477 0.0036 12 8 8.3032 -2.3023 0.0026 13 7 8.7845 -4.4682 0.0045 14 6 10.1312 -4.2116 0.0039 15 1 10.4865 -3.1917 0.0030 16 6 11.0389 -5.2635 0.0043 17 7 10.6065 -6.5045 0.0048 18 14 12.8739 -4.9139 0.0027 19 1 13.0981 -3.4459 0.0016 20 1 13.4920 -5.5077 1.2153 21 1 13.4903 -5.5101 -1.2097 22 6 2.1959 -1.1966 0.0005 23 35 1.2510 -2.8345 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6537 2.1319 -0.0004 28 1 4.1133 2.1475 0.0001 29 1 5.3620 0.0289 -0.0084 30 1 6.1665 -1.6222 0.0032 31 1 6.1626 -4.3023 0.8938 32 1 6.1632 -4.3028 -0.8862 33 1 8.4652 -5.3841 0.0049 34 1 11.2402 -7.2389 0.0055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -57.715209 kcal Electronic energy + Delta-G solvation = -20326.647434 eV Core-core repulsion = 16884.131557 eV Total energy + Delta-G solvation = -3442.515877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43933 -40.28366 -39.35802 -36.29215 -35.45766 -34.10854 -33.39145 -33.10415 -30.67679 -29.27385 -27.77304 -26.56637 -24.52099 -22.65055 -21.40065 -21.34254 -20.10837 -18.96428 -17.60084 -17.27623 -16.89875 -16.79306 -16.37665 -16.14255 -15.83643 -15.63914 -15.31316 -14.78716 -14.74389 -14.24030 -13.86610 -13.66627 -13.56194 -13.20505 -13.02377 -12.90355 -12.73231 -12.45594 -12.29569 -12.11350 -11.83291 -11.72223 -11.59003 -10.58027 -10.29885 -10.10797 -9.95784 -9.87356 -9.66494 -8.52062 -6.02372 -0.34886 0.10683 0.69862 1.34485 1.42575 1.56637 1.75941 1.89583 1.94189 2.30394 2.65828 3.09205 3.15209 3.54755 3.64227 3.92740 4.13828 4.18616 4.24768 4.37574 4.41254 4.48101 4.60496 4.77235 4.80644 5.04849 5.20225 5.22918 5.28707 5.34887 5.37758 5.74962 5.90603 6.41416 6.48265 7.02125 7.08011 7.42629 7.92404 8.65101 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.002660 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.905895 B =10523.321910 C =11584.780000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.081 4.081 4 C -0.102 4.102 5 C -0.092 4.092 6 C -0.129 4.129 7 C 0.541 3.459 8 O -0.542 6.542 9 N -0.702 5.702 10 C 0.123 3.877 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.559 5.559 14 C -0.336 4.336 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.068 4.068 23 Br -0.029 7.029 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.411 0.589 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.399 0.601 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.327 14.334 -0.034 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.100 4.100 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.134 4.134 7 C 0.329 3.671 8 O -0.420 6.420 9 N -0.357 5.357 10 C -0.004 4.004 11 C 0.220 3.780 12 O -0.511 6.511 13 N -0.194 5.194 14 C -0.465 4.465 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.821 3.179 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.149 4.149 23 Br 0.058 6.942 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.192 0.808 28 H 0.186 0.814 29 H 0.157 0.843 30 H 0.250 0.750 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.721 13.477 -0.034 25.562 hybrid contribution 1.467 -0.260 -0.009 1.490 sum -20.254 13.216 -0.043 24.185 Atomic orbital electron populations 1.21058 0.88175 1.04672 1.04069 1.20172 0.98228 0.90816 0.98256 1.21710 0.94261 0.98024 0.95993 1.21644 0.94681 0.98570 0.97135 1.21603 1.00919 0.91353 0.97321 1.19672 0.92904 0.93712 1.07137 1.18571 0.81823 0.89799 0.76916 1.90919 1.67759 1.33168 1.50181 1.45627 1.05746 1.09974 1.74396 1.20777 0.88106 0.87197 1.04352 1.20373 0.88466 0.85505 0.83612 1.90462 1.80493 1.22116 1.58062 1.41849 1.05963 1.08261 1.63348 1.19780 0.81760 0.94701 1.50281 0.89482 1.26146 1.05050 0.94218 0.95771 1.69690 1.37558 0.99088 1.49336 0.84806 0.76305 0.78541 0.78298 1.19311 1.19652 1.19647 1.22080 0.93219 0.93377 1.06192 1.96692 1.72121 1.28470 1.96945 0.89449 0.91342 0.88234 0.80838 0.81368 0.84257 0.74959 0.88673 0.88679 0.76712 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.55 71.24 0.68 -0.85 16 2 C -0.07 -1.29 5.88 -19.88 -0.12 -1.41 16 3 C -0.08 -1.04 9.69 22.32 0.22 -0.82 16 4 C -0.10 -1.48 10.03 22.23 0.22 -1.26 16 5 C -0.09 -1.98 9.54 22.53 0.21 -1.76 16 6 C -0.13 -3.55 5.88 -20.07 -0.12 -3.67 16 7 C 0.54 18.18 7.76 86.77 0.67 18.85 16 8 O -0.54 -20.53 13.48 -3.90 -0.05 -20.58 16 9 N -0.70 -24.02 5.48 -469.78 -2.57 -26.59 16 10 C 0.12 4.59 6.15 85.63 0.53 5.12 16 11 C 0.43 20.07 7.85 87.66 0.69 20.76 16 12 O -0.62 -32.01 15.24 -3.07 -0.05 -32.06 16 13 N -0.56 -28.16 5.29 -306.98 -1.62 -29.78 16 14 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 15 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 16 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 17 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 18 Si 1.00 41.68 29.55 68.60 2.03 43.71 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 C -0.07 -1.71 6.25 22.59 0.14 -1.57 16 23 Br -0.03 -0.80 28.47 -20.37 -0.58 -1.38 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.01 6.64 -2.39 -0.02 0.99 16 26 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 28 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.14 2.87 6.40 -2.91 -0.02 2.85 16 30 H 0.41 13.60 5.47 -92.71 -0.51 13.10 16 31 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 34 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.11 316.15 1.78 -66.34 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.07 Total: 33.32 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 4.41 Total: 15.59 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.91 Total: -104.94 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.10 Total: -52.64 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.58 Total: -1.38 kcal Total: -68.11 1.78 -66.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.621 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds