Wall clock time and date at job start Sat Apr 11 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38076 * 120.07721 * 2 1 4 4 Br 1.89102 * 119.93901 * 359.97438 * 3 2 1 5 5 C 1.38430 * 120.12025 * 180.25453 * 3 2 1 6 6 C 1.38364 * 120.28488 * 359.45051 * 5 3 2 7 7 C 1.37937 * 120.15176 * 0.54908 * 6 5 3 8 8 C 1.39539 * 120.08117 * 179.97438 * 2 1 3 9 9 C 1.47845 * 120.13785 * 0.04331 * 8 2 1 10 10 O 1.21551 * 120.00088 * 6.18017 * 9 8 2 11 11 N 1.34779 * 120.00271 * 186.18988 * 9 8 2 12 12 C 1.46500 * 120.00308 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46986 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00150 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99834 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00063 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99771 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00528 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00047 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46771 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47286 * 119.99668 * 20 18 16 23 23 H 1.48502 * 109.47189 * 240.00436 * 20 18 16 24 24 H 1.08990 * 109.47286 * 96.54532 * 1 2 3 25 25 H 1.09004 * 109.46770 * 216.54698 * 1 2 3 26 26 H 1.09002 * 109.46925 * 336.54004 * 1 2 3 27 27 H 1.08003 * 119.85554 * 179.72820 * 5 3 2 28 28 H 1.07997 * 119.91852 * 180.25856 * 6 5 3 29 29 H 1.08000 * 120.06253 * 179.70379 * 7 6 5 30 30 H 0.97001 * 119.99805 * 359.97438 * 11 9 8 31 31 H 1.08997 * 109.47317 * 300.00047 * 12 11 9 32 32 H 1.09002 * 109.46619 * 59.99837 * 12 11 9 33 33 H 0.97000 * 119.99949 * 359.97438 * 15 13 12 34 34 H 0.96999 * 120.00405 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1948 0.0000 4 35 1.2540 2.8328 -0.0007 5 6 3.5833 1.1959 -0.0053 6 6 4.2820 0.0016 0.0008 7 6 3.6024 -1.1987 0.0008 8 6 2.2064 -1.2075 0.0005 9 6 1.4721 -2.4906 0.0001 10 8 0.2620 -2.4984 -0.1140 11 7 2.1444 -3.6519 0.1265 12 6 1.4167 -4.9234 0.1267 13 6 2.3932 -6.0610 0.2799 14 8 3.5802 -5.8321 0.3796 15 7 1.9476 -7.3327 0.3060 16 6 2.8358 -8.3676 0.4459 17 1 3.8927 -8.1638 0.5347 18 6 2.3763 -9.6786 0.4734 19 7 1.0905 -9.9266 0.3649 20 14 3.5867 -11.0888 0.6633 21 1 4.9657 -10.5472 0.7643 22 1 3.2650 -11.8550 1.8940 23 1 3.4916 -11.9850 -0.5170 24 1 -0.3633 -0.1171 -1.0209 25 1 -0.3633 -0.8256 0.6120 26 1 -0.3633 0.9427 0.4091 27 1 4.1202 2.1330 -0.0097 28 1 5.3619 0.0094 0.0008 29 1 4.1492 -2.1300 0.0008 30 1 3.1101 -3.6458 0.2174 31 1 0.7094 -4.9371 0.9559 32 1 0.8764 -5.0329 -0.8136 33 1 0.9983 -7.5157 0.2267 34 1 0.7697 -10.8418 0.3845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344168522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:11 Heat of formation + Delta-G solvation = -46.505031 kcal Electronic energy + Delta-G solvation = -20322.141202 eV Core-core repulsion = 16880.111435 eV Total energy + Delta-G solvation = -3442.029767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51253 -38.80545 -37.95628 -34.73763 -33.94774 -33.06267 -32.36228 -31.42858 -29.92996 -27.89755 -26.89894 -24.73781 -23.54572 -21.65242 -20.40681 -19.64630 -18.27709 -17.72514 -16.34154 -16.09271 -15.65084 -15.45677 -15.00223 -14.98541 -14.41691 -14.37612 -13.93808 -13.50689 -13.44251 -13.32834 -12.41606 -12.33807 -12.26005 -12.10352 -11.96246 -11.67431 -11.50424 -11.18183 -11.11881 -10.44266 -10.36750 -10.32678 -9.69340 -9.62685 -9.24285 -8.93962 -8.80842 -8.69719 -8.15017 -6.55808 -3.97998 0.52851 0.87887 1.32681 2.71729 3.07187 3.17693 3.21698 3.28446 3.55187 3.69136 4.07278 4.48922 4.49295 4.65818 4.79358 4.81984 5.01114 5.12757 5.26001 5.43717 5.51835 5.73157 5.82696 5.84247 5.88971 5.99651 6.00129 6.04515 6.25454 6.46263 6.60404 7.42177 7.67158 7.87272 8.29208 8.40202 9.00099 9.34155 9.81516 10.61029 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.041028 B = 0.002124 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.295156 B =13178.532279 C =13830.495301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.005 3.995 3 C -0.109 4.109 4 Br -0.045 7.045 5 C -0.064 4.064 6 C -0.129 4.129 7 C -0.064 4.064 8 C -0.129 4.129 9 C 0.555 3.445 10 O -0.536 6.536 11 N -0.700 5.700 12 C 0.109 3.891 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.547 5.547 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.410 0.590 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 24.284 -0.931 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.003 3.997 3 C -0.188 4.188 4 Br 0.040 6.960 5 C -0.084 4.084 6 C -0.148 4.148 7 C -0.083 4.083 8 C -0.133 4.133 9 C 0.342 3.658 10 O -0.415 6.415 11 N -0.354 5.354 12 C -0.019 4.019 13 C 0.213 3.787 14 O -0.485 6.485 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.249 0.751 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.397 24.793 -0.943 24.815 hybrid contribution 0.727 -1.295 0.052 1.486 sum 1.125 23.498 -0.891 23.542 Atomic orbital electron populations 1.21315 0.89014 1.04088 1.04433 1.19910 0.97485 0.89962 0.92389 1.21668 0.94749 0.91301 1.11068 1.96669 1.75946 1.25614 1.97750 1.21291 0.91895 0.99353 0.95897 1.21104 1.00610 0.91379 1.01719 1.21612 0.93066 0.99343 0.94248 1.19788 0.93605 0.93007 1.06909 1.18046 0.87061 0.83416 0.77250 1.90722 1.13468 1.87109 1.50182 1.45628 1.12181 1.04794 1.72834 1.20994 0.94596 0.82839 1.03429 1.19708 0.89072 0.84137 0.85828 1.90492 1.16844 1.83807 1.57394 1.41801 1.10507 1.04111 1.61783 1.19780 0.91928 0.84263 1.47486 0.87585 1.25337 0.96715 0.98903 0.96752 1.69616 1.12943 1.21814 1.48990 0.85756 0.80222 0.80191 0.77912 1.19111 1.20577 1.20572 0.89907 0.87894 0.91428 0.84639 0.84347 0.84337 0.75072 0.89563 0.89561 0.76998 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.39 36.01 0.30 -1.31 16 2 C 0.01 0.07 5.92 -104.20 -0.62 -0.55 16 3 C -0.11 -1.16 6.22 -39.57 -0.25 -1.41 16 4 Br -0.05 -0.43 31.66 -68.01 -2.15 -2.58 16 5 C -0.06 -0.58 9.78 -39.46 -0.39 -0.97 16 6 C -0.13 -1.15 10.03 -39.65 -0.40 -1.55 16 7 C -0.06 -0.69 9.52 -39.18 -0.37 -1.07 16 8 C -0.13 -1.69 5.87 -104.97 -0.62 -2.31 16 9 C 0.56 8.65 7.70 -12.33 -0.09 8.55 16 10 O -0.54 -9.36 13.34 5.32 0.07 -9.29 16 11 N -0.70 -11.30 5.48 -62.43 -0.34 -11.65 16 12 C 0.11 1.93 6.15 -5.19 -0.03 1.90 16 13 C 0.43 9.50 7.85 -10.99 -0.09 9.42 16 14 O -0.60 -14.85 15.24 5.55 0.08 -14.76 16 15 N -0.55 -13.27 5.29 -10.96 -0.06 -13.33 16 16 C -0.31 -8.14 9.68 -14.93 -0.14 -8.29 16 17 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.53 13.05 55.50 0.72 -22.80 16 20 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.10 1.43 5.85 -51.93 -0.30 1.13 16 26 H 0.07 0.72 6.35 -51.93 -0.33 0.39 16 27 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.14 1.39 6.45 -52.49 -0.34 1.05 16 30 H 0.41 6.42 5.51 -40.82 -0.22 6.19 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 315.63 15.07 4.76 4.76 Total: -1.00 -29.84 315.63 -7.87 -37.71 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -3.14 Total: 13.76 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.79 Total: 3.00 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.32 Total: -47.78 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.16 Total: -24.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.15 Total: -2.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.84 -7.87 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344168522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds