Wall clock time and date at job start Sat Apr 11 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38076 * 120.07721 * 2 1 4 4 Br 1.89102 * 119.93901 * 359.97438 * 3 2 1 5 5 C 1.38430 * 120.12025 * 180.25453 * 3 2 1 6 6 C 1.38364 * 120.28488 * 359.45051 * 5 3 2 7 7 C 1.37937 * 120.15176 * 0.54908 * 6 5 3 8 8 C 1.39539 * 120.08117 * 179.97438 * 2 1 3 9 9 C 1.47845 * 120.13785 * 0.04331 * 8 2 1 10 10 O 1.21551 * 120.00088 * 6.18017 * 9 8 2 11 11 N 1.34779 * 120.00271 * 186.18988 * 9 8 2 12 12 C 1.46500 * 120.00308 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46986 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00150 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99834 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00063 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99771 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00528 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00047 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46771 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47286 * 119.99668 * 20 18 16 23 23 H 1.48502 * 109.47189 * 240.00436 * 20 18 16 24 24 H 1.08990 * 109.47286 * 96.54532 * 1 2 3 25 25 H 1.09004 * 109.46770 * 216.54698 * 1 2 3 26 26 H 1.09002 * 109.46925 * 336.54004 * 1 2 3 27 27 H 1.08003 * 119.85554 * 179.72820 * 5 3 2 28 28 H 1.07997 * 119.91852 * 180.25856 * 6 5 3 29 29 H 1.08000 * 120.06253 * 179.70379 * 7 6 5 30 30 H 0.97001 * 119.99805 * 359.97438 * 11 9 8 31 31 H 1.08997 * 109.47317 * 300.00047 * 12 11 9 32 32 H 1.09002 * 109.46619 * 59.99837 * 12 11 9 33 33 H 0.97000 * 119.99949 * 359.97438 * 15 13 12 34 34 H 0.96999 * 120.00405 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1948 0.0000 4 35 1.2540 2.8328 -0.0007 5 6 3.5833 1.1959 -0.0053 6 6 4.2820 0.0016 0.0008 7 6 3.6024 -1.1987 0.0008 8 6 2.2064 -1.2075 0.0005 9 6 1.4721 -2.4906 0.0001 10 8 0.2620 -2.4984 -0.1140 11 7 2.1444 -3.6519 0.1265 12 6 1.4167 -4.9234 0.1267 13 6 2.3932 -6.0610 0.2799 14 8 3.5802 -5.8321 0.3796 15 7 1.9476 -7.3327 0.3060 16 6 2.8358 -8.3676 0.4459 17 1 3.8927 -8.1638 0.5347 18 6 2.3763 -9.6786 0.4734 19 7 1.0905 -9.9266 0.3649 20 14 3.5867 -11.0888 0.6633 21 1 4.9657 -10.5472 0.7643 22 1 3.2650 -11.8550 1.8940 23 1 3.4916 -11.9850 -0.5170 24 1 -0.3633 -0.1171 -1.0209 25 1 -0.3633 -0.8256 0.6120 26 1 -0.3633 0.9427 0.4091 27 1 4.1202 2.1330 -0.0097 28 1 5.3619 0.0094 0.0008 29 1 4.1492 -2.1300 0.0008 30 1 3.1101 -3.6458 0.2174 31 1 0.7094 -4.9371 0.9559 32 1 0.8764 -5.0329 -0.8136 33 1 0.9983 -7.5157 0.2267 34 1 0.7697 -10.8418 0.3845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344168522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:11 Heat of formation + Delta-G solvation = -65.876718 kcal Electronic energy + Delta-G solvation = -20322.981221 eV Core-core repulsion = 16880.111435 eV Total energy + Delta-G solvation = -3442.869787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60558 -40.30336 -39.29477 -36.33390 -35.56540 -34.00224 -33.42066 -33.20071 -30.86163 -29.21473 -27.95427 -26.48209 -24.60788 -22.53625 -21.59091 -21.35103 -20.09922 -19.03838 -17.55487 -17.32201 -16.89235 -16.82025 -16.42109 -16.20866 -15.93139 -15.71537 -15.45806 -14.70726 -14.64026 -14.23825 -13.95396 -13.61599 -13.55920 -13.28230 -13.21443 -12.93250 -12.91680 -12.45007 -12.31516 -12.11156 -11.91910 -11.58611 -11.12724 -10.80890 -10.57711 -10.33731 -10.10695 -9.92660 -9.72841 -8.51840 -6.01974 -0.34981 0.05147 0.53403 1.34795 1.43132 1.56870 1.67932 1.89684 1.93761 2.30497 2.61157 3.09144 3.15593 3.52566 3.68676 3.84964 3.94075 4.17982 4.23118 4.37783 4.41183 4.49287 4.62327 4.65758 4.74444 5.07047 5.08917 5.19864 5.21882 5.37790 5.41660 5.64856 5.91038 6.40429 6.48182 7.02447 7.05488 7.43157 7.92915 8.65261 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.041028 B = 0.002124 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.295156 B =13178.532279 C =13830.495301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.010 4.010 3 C -0.117 4.117 4 Br -0.034 7.034 5 C -0.054 4.054 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.150 4.150 9 C 0.556 3.444 10 O -0.560 6.560 11 N -0.702 5.702 12 C 0.121 3.879 13 C 0.433 3.567 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.335 4.335 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.144 0.856 30 H 0.413 0.587 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.399 0.601 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 25.496 -0.939 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.197 4.197 4 Br 0.051 6.949 5 C -0.074 4.074 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.154 4.154 9 C 0.345 3.655 10 O -0.441 6.441 11 N -0.356 5.356 12 C -0.006 4.006 13 C 0.220 3.780 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.197 1.197 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.183 0.817 28 H 0.190 0.810 29 H 0.161 0.839 30 H 0.252 0.748 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.635 26.026 -0.953 26.095 hybrid contribution 0.357 -1.529 0.051 1.571 sum 1.992 24.497 -0.903 24.594 Atomic orbital electron populations 1.21202 0.89502 1.03824 1.03722 1.19958 0.97410 0.90550 0.93351 1.21825 0.95660 0.91155 1.11018 1.96680 1.76012 1.24468 1.97721 1.21696 0.91244 1.00715 0.93762 1.21482 1.02203 0.90313 0.99809 1.21763 0.92164 1.00644 0.94053 1.19645 0.94529 0.91754 1.09480 1.18458 0.86901 0.83945 0.76234 1.90711 1.14575 1.87507 1.51266 1.45611 1.12228 1.04412 1.73377 1.20814 0.93504 0.81897 1.04405 1.20382 0.89389 0.84522 0.83709 1.90468 1.18381 1.84366 1.57930 1.41850 1.10381 1.04498 1.62699 1.19772 0.91589 0.85634 1.49480 0.89486 1.26130 0.98430 1.00708 0.95893 1.69680 1.14159 1.22659 1.49147 0.84817 0.77849 0.77096 0.78263 1.19340 1.19690 1.19675 0.90488 0.89954 0.90192 0.81743 0.81034 0.83871 0.74761 0.88494 0.88486 0.76682 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.39 71.24 0.60 -2.50 16 2 C -0.01 -0.24 5.92 -19.59 -0.12 -0.35 16 3 C -0.12 -2.28 6.22 22.28 0.14 -2.15 16 4 Br -0.03 -0.59 31.66 -20.37 -0.64 -1.23 16 5 C -0.05 -0.81 9.78 22.35 0.22 -0.59 16 6 C -0.12 -1.75 10.03 22.23 0.22 -1.52 16 7 C -0.07 -1.35 9.52 22.53 0.21 -1.14 16 8 C -0.15 -3.85 5.87 -20.09 -0.12 -3.97 16 9 C 0.56 17.38 7.70 86.79 0.67 18.05 16 10 O -0.56 -19.90 13.34 -3.87 -0.05 -19.95 16 11 N -0.70 -22.62 5.48 -469.71 -2.57 -25.20 16 12 C 0.12 4.31 6.15 85.63 0.53 4.84 16 13 C 0.43 19.48 7.85 87.66 0.69 20.17 16 14 O -0.62 -31.27 15.24 -3.07 -0.05 -31.32 16 15 N -0.56 -27.55 5.29 -306.98 -1.62 -29.18 16 16 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 17 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 19 N -0.92 -48.20 13.05 21.66 0.28 -47.92 16 20 Si 1.00 41.21 29.55 68.60 2.03 43.23 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 2.36 5.85 -2.39 -0.01 2.35 16 26 H 0.08 1.68 6.35 -2.39 -0.02 1.66 16 27 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 28 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.14 2.69 6.45 -2.91 -0.02 2.67 16 30 H 0.41 12.87 5.51 -92.71 -0.51 12.36 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.25 16 32 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.40 18.92 7.90 -92.71 -0.73 18.18 16 34 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -64.08 315.63 1.63 -62.45 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.07 Total: 35.74 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 4.32 Total: 13.36 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.91 Total: -102.29 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.10 Total: -51.27 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -0.64 Total: -1.23 kcal Total: -64.08 1.63 -62.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344168522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.422 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds