Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48500 * 109.47199 * 270.00150 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47285 * 149.99944 * 3 2 1 7 7 C 1.37871 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99960 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00168 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99585 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00684 * 359.97438 * 11 10 9 13 13 C 1.50709 * 119.99753 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47078 * 179.97438 * 13 11 10 15 15 C 1.34774 * 119.99748 * 179.97438 * 14 13 11 16 16 O 1.21558 * 120.00487 * 0.02562 * 15 14 13 17 17 C 1.47804 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.39607 * 120.13442 * 0.31906 * 17 15 14 19 19 C 1.37904 * 119.86225 * 180.25469 * 18 17 15 20 20 C 1.38487 * 120.13363 * 359.44841 * 19 18 17 21 21 Br 1.89097 * 119.86130 * 180.27846 * 20 19 18 22 22 C 1.38476 * 120.27188 * 0.25944 * 20 19 18 23 23 C 1.37906 * 120.13374 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99641 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46885 * 60.00084 * 9 7 2 26 26 H 1.08993 * 109.47189 * 300.00013 * 9 7 2 27 27 H 0.96998 * 119.99963 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.46834 * 59.99335 * 13 11 10 29 29 H 1.09007 * 109.46580 * 299.99921 * 13 11 10 30 30 H 0.96996 * 120.00029 * 359.97438 * 14 13 11 31 31 H 1.07998 * 120.06709 * 359.97438 * 18 17 15 32 32 H 1.08002 * 119.93538 * 179.73250 * 19 18 17 33 33 H 1.07992 * 119.92962 * 180.02562 * 22 20 19 34 34 H 1.08004 * 120.06628 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8274 -4.2423 -0.0014 14 7 7.2923 -4.2423 -0.0018 15 6 7.9662 -5.4095 -0.0018 16 8 7.3585 -6.4622 -0.0018 17 6 9.4442 -5.4094 -0.0028 18 6 10.1451 -4.2021 0.0029 19 6 11.5241 -4.2086 -0.0034 20 6 12.2137 -5.4095 -0.0038 21 35 14.1046 -5.4094 -0.0045 22 6 11.5241 -6.6104 -0.0034 23 6 10.1451 -6.6169 -0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.3696 -3.3125 -0.0010 28 1 5.4640 -4.7558 -0.8916 29 1 5.4639 -4.7564 0.8885 30 1 7.7773 -3.4022 -0.0022 31 1 9.6084 -3.2649 0.0076 32 1 12.0675 -3.2752 -0.0034 33 1 12.0675 -7.5437 -0.0033 34 1 9.6084 -7.5541 -0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345168405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = -46.757410 kcal Electronic energy + Delta-G solvation = -19771.486135 eV Core-core repulsion = 16329.445424 eV Total energy + Delta-G solvation = -3442.040711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60903 -39.33774 -38.43348 -34.91040 -34.32084 -32.93366 -32.47874 -31.58520 -30.20602 -28.88442 -26.89031 -23.78054 -23.17194 -22.09496 -20.67020 -20.24853 -18.82928 -17.18959 -16.68604 -16.34274 -15.88680 -15.72835 -15.58183 -15.11086 -14.78147 -14.72041 -14.19196 -14.03829 -13.63839 -13.50318 -12.96150 -12.86438 -12.43265 -12.23066 -12.04808 -11.76547 -11.28682 -11.13994 -10.85547 -10.76735 -10.28276 -10.06190 -9.61955 -9.57284 -9.54137 -9.40722 -9.14597 -8.87275 -8.36116 -6.28542 -4.32007 0.18533 0.80565 1.09529 2.42595 2.77453 2.91035 3.20711 3.27970 3.34259 3.36653 3.80145 4.23607 4.26022 4.34293 4.42128 4.76381 4.83743 5.06094 5.06496 5.09343 5.33492 5.35157 5.43612 5.62233 5.65536 5.81809 6.08079 6.21478 6.65423 6.93742 6.98628 7.25382 7.28638 7.89221 7.99374 8.35127 8.56953 8.72709 9.30102 10.83200 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.001869 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.050665 B =14977.756059 C =15930.359704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.495 3.505 12 O -0.559 6.559 13 C 0.098 3.902 14 N -0.707 5.707 15 C 0.558 3.442 16 O -0.535 6.535 17 C -0.115 4.115 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.070 4.070 21 Br -0.046 7.046 22 C -0.100 4.100 23 C -0.054 4.054 24 H 0.269 0.731 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.401 0.599 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.412 0.588 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.351 -13.037 0.023 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.280 3.720 12 O -0.439 6.439 13 C -0.029 4.029 14 N -0.362 5.362 15 C 0.345 3.655 16 O -0.413 6.413 17 C -0.119 4.119 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.150 4.150 21 Br 0.040 6.960 22 C -0.120 4.120 23 C -0.073 4.073 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.235 0.765 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 28.949 -12.954 0.026 31.715 hybrid contribution -0.262 1.027 -0.023 1.060 sum 28.687 -11.928 0.003 31.068 Atomic orbital electron populations 1.69880 1.06213 1.27531 1.49016 1.24803 0.94817 0.99204 0.93801 0.86805 0.80509 0.83223 0.79054 1.19818 1.20829 1.18555 1.21066 0.88348 0.95362 1.53747 0.90095 1.19561 0.95476 0.78118 0.97010 1.46129 1.05297 1.11624 1.71310 1.20356 0.83821 0.90227 0.77632 1.90637 1.55424 1.45917 1.51901 1.21172 0.80919 0.95860 1.04997 1.45619 1.06757 1.09434 1.74432 1.18129 0.86942 0.83683 0.76774 1.90795 1.69662 1.31041 1.49846 1.20088 0.93093 0.94470 1.04210 1.21461 0.93916 0.97860 0.96538 1.21101 0.94058 0.97179 0.99363 1.22086 0.90770 0.96408 1.05696 1.96771 1.02444 1.99317 1.97481 1.21125 0.94042 0.97084 0.99724 1.21310 0.93086 0.98250 0.94686 0.92155 0.95444 0.95890 0.76473 0.88186 0.88182 0.74893 0.84162 0.84137 0.84180 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.55 -14.46 9.83 -34.44 -0.34 -14.80 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.81 16 9 C 0.22 5.11 4.50 -5.19 -0.02 5.08 16 10 N -0.70 -12.91 5.55 -61.47 -0.34 -13.25 16 11 C 0.50 8.38 7.90 -10.98 -0.09 8.29 16 12 O -0.56 -11.04 15.67 5.56 0.09 -10.95 16 13 C 0.10 1.27 6.15 -5.19 -0.03 1.24 16 14 N -0.71 -8.75 5.48 -62.44 -0.34 -9.09 16 15 C 0.56 6.99 7.77 -12.35 -0.10 6.90 16 16 O -0.54 -8.13 16.35 5.32 0.09 -8.05 16 17 C -0.12 -1.17 5.87 -104.96 -0.62 -1.79 16 18 C -0.08 -0.67 9.54 -39.19 -0.37 -1.05 16 19 C -0.10 -0.76 9.77 -39.61 -0.39 -1.15 16 20 C -0.07 -0.56 6.23 -39.40 -0.25 -0.80 16 21 Br -0.05 -0.33 33.69 -68.01 -2.29 -2.62 16 22 C -0.10 -0.77 9.77 -39.62 -0.39 -1.15 16 23 C -0.05 -0.48 9.59 -39.19 -0.38 -0.86 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 27 H 0.40 6.50 8.32 -40.82 -0.34 6.16 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.41 4.85 5.47 -40.82 -0.22 4.63 16 31 H 0.14 1.05 6.40 -52.49 -0.34 0.71 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.15 1.26 7.65 -52.48 -0.40 0.85 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -31.80 322.47 -8.23 -40.03 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.34 Total: 6.09 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.06 Total: 1.97 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.09 Total: -47.38 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.29 Total: -2.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.80 -8.23 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345168405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.723 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds