Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48500 * 109.47199 * 270.00150 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99852 * 3 2 1 6 6 H 1.48497 * 109.47285 * 149.99944 * 3 2 1 7 7 C 1.37871 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99960 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00168 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99585 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00684 * 359.97438 * 11 10 9 13 13 C 1.50709 * 119.99753 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47078 * 179.97438 * 13 11 10 15 15 C 1.34774 * 119.99748 * 179.97438 * 14 13 11 16 16 O 1.21558 * 120.00487 * 0.02562 * 15 14 13 17 17 C 1.47804 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.39607 * 120.13442 * 0.31906 * 17 15 14 19 19 C 1.37904 * 119.86225 * 180.25469 * 18 17 15 20 20 C 1.38487 * 120.13363 * 359.44841 * 19 18 17 21 21 Br 1.89097 * 119.86130 * 180.27846 * 20 19 18 22 22 C 1.38476 * 120.27188 * 0.25944 * 20 19 18 23 23 C 1.37906 * 120.13374 * 0.02562 * 22 20 19 24 24 H 0.97003 * 119.99641 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46885 * 60.00084 * 9 7 2 26 26 H 1.08993 * 109.47189 * 300.00013 * 9 7 2 27 27 H 0.96998 * 119.99963 * 0.02562 * 10 9 7 28 28 H 1.08999 * 109.46834 * 59.99335 * 13 11 10 29 29 H 1.09007 * 109.46580 * 299.99921 * 13 11 10 30 30 H 0.96996 * 120.00029 * 359.97438 * 14 13 11 31 31 H 1.07998 * 120.06709 * 359.97438 * 18 17 15 32 32 H 1.08002 * 119.93538 * 179.73250 * 19 18 17 33 33 H 1.07992 * 119.92962 * 180.02562 * 22 20 19 34 34 H 1.08004 * 120.06628 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8274 -4.2423 -0.0014 14 7 7.2923 -4.2423 -0.0018 15 6 7.9662 -5.4095 -0.0018 16 8 7.3585 -6.4622 -0.0018 17 6 9.4442 -5.4094 -0.0028 18 6 10.1451 -4.2021 0.0029 19 6 11.5241 -4.2086 -0.0034 20 6 12.2137 -5.4095 -0.0038 21 35 14.1046 -5.4094 -0.0045 22 6 11.5241 -6.6104 -0.0034 23 6 10.1451 -6.6169 -0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.3696 -3.3125 -0.0010 28 1 5.4640 -4.7558 -0.8916 29 1 5.4639 -4.7564 0.8885 30 1 7.7773 -3.4022 -0.0022 31 1 9.6084 -3.2649 0.0076 32 1 12.0675 -3.2752 -0.0034 33 1 12.0675 -7.5437 -0.0033 34 1 9.6084 -7.5541 -0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345168405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = -69.166967 kcal Electronic energy + Delta-G solvation = -19772.457886 eV Core-core repulsion = 16329.445424 eV Total energy + Delta-G solvation = -3443.012463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55214 -40.56681 -39.36084 -36.37850 -35.62819 -34.45290 -33.60099 -32.23599 -31.09826 -30.29969 -28.25751 -24.73372 -24.01521 -23.60445 -21.69843 -21.57795 -19.89127 -18.86009 -17.74190 -17.57259 -17.04712 -16.87814 -16.68683 -16.18003 -15.96030 -15.84871 -15.53367 -14.88663 -14.67563 -14.61695 -14.38643 -14.16964 -14.07159 -13.48466 -13.08647 -12.89394 -12.69405 -12.38526 -11.92909 -11.92781 -11.66420 -11.35785 -11.26937 -11.04918 -10.91904 -10.40557 -10.19095 -10.00983 -9.83249 -8.39269 -6.47072 -0.52206 0.18564 0.48776 1.34480 1.36962 1.48083 1.52039 1.60556 1.73551 2.28605 2.49428 2.62368 2.96199 3.50596 3.62207 3.75541 3.79751 4.13656 4.20260 4.30104 4.34122 4.47404 4.75062 4.84475 4.95894 5.02526 5.03179 5.08981 5.16412 5.25199 5.41552 5.57208 6.05599 6.31731 6.53731 6.70534 6.97888 7.11025 7.26730 8.75342 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.001869 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.050665 B =14977.756059 C =15930.359704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.584 6.584 13 C 0.108 3.892 14 N -0.707 5.707 15 C 0.561 3.439 16 O -0.566 6.566 17 C -0.132 4.132 18 C -0.077 4.077 19 C -0.098 4.098 20 C -0.073 4.073 21 Br -0.037 7.037 22 C -0.097 4.097 23 C -0.058 4.058 24 H 0.272 0.728 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.412 0.588 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.415 0.585 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.554 -13.005 -0.003 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.177 4.177 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.108 3.892 10 N -0.347 5.347 11 C 0.288 3.712 12 O -0.466 6.466 13 C -0.019 4.019 14 N -0.362 5.362 15 C 0.349 3.651 16 O -0.447 6.447 17 C -0.136 4.136 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.153 4.153 21 Br 0.048 6.952 22 C -0.117 4.117 23 C -0.078 4.078 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.248 0.752 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.255 0.745 31 H 0.167 0.833 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 31.173 -12.943 -0.001 33.753 hybrid contribution -0.886 0.939 -0.014 1.291 sum 30.287 -12.004 -0.015 32.579 Atomic orbital electron populations 1.69995 1.07822 1.28629 1.50631 1.25652 0.95566 1.02876 0.93609 0.85815 0.79329 0.79056 0.79425 1.19017 1.20188 1.17950 1.21309 0.90098 0.94593 1.52699 0.92278 1.19160 0.93273 0.80585 0.96192 1.45939 1.06443 1.10241 1.72098 1.20876 0.82712 0.91589 0.76035 1.90624 1.55906 1.47314 1.52744 1.21100 0.81445 0.92829 1.06496 1.45627 1.06416 1.09728 1.74382 1.18437 0.87854 0.83010 0.75769 1.90775 1.70480 1.31946 1.51465 1.20000 0.91705 0.95605 1.06246 1.21555 0.94325 0.97643 0.96129 1.21320 0.93804 0.97954 0.98703 1.22271 0.91340 0.96625 1.05104 1.96788 1.01644 1.99311 1.97409 1.21319 0.93545 0.97938 0.98857 1.21387 0.93684 0.97949 0.94746 0.91891 0.96351 0.96454 0.75164 0.86632 0.86639 0.74478 0.83288 0.82423 0.82260 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 2 C 0.02 1.28 5.47 84.65 0.46 1.74 16 3 Si 0.94 42.43 27.47 68.60 1.88 44.32 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.55 -29.17 9.83 25.60 0.25 -28.92 16 8 H 0.06 3.32 7.84 -2.91 -0.02 3.29 16 9 C 0.23 10.59 4.50 85.63 0.38 10.98 16 10 N -0.70 -25.27 5.55 -466.79 -2.59 -27.86 16 11 C 0.50 16.28 7.90 87.66 0.69 16.97 16 12 O -0.58 -22.34 15.67 -3.01 -0.05 -22.39 16 13 C 0.11 2.63 6.15 85.64 0.53 3.15 16 14 N -0.71 -16.47 5.48 -469.74 -2.57 -19.05 16 15 C 0.56 13.47 7.77 86.77 0.67 14.14 16 16 O -0.57 -16.76 16.35 -3.90 -0.06 -16.82 16 17 C -0.13 -2.53 5.87 -20.08 -0.12 -2.65 16 18 C -0.08 -1.20 9.54 22.52 0.21 -0.98 16 19 C -0.10 -1.33 9.77 22.25 0.22 -1.12 16 20 C -0.07 -1.02 6.23 22.39 0.14 -0.88 16 21 Br -0.04 -0.47 33.69 -20.37 -0.69 -1.15 16 22 C -0.10 -1.31 9.77 22.25 0.22 -1.09 16 23 C -0.06 -0.97 9.59 22.52 0.22 -0.76 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 26 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 27 H 0.41 13.05 8.32 -92.71 -0.77 12.27 16 28 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.42 9.19 5.47 -92.71 -0.51 8.69 16 31 H 0.15 1.98 6.40 -2.91 -0.02 1.96 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.41 7.65 -2.91 -0.02 2.39 16 Total: -1.00 -67.20 322.47 -0.07 -67.26 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.17 Total: 19.52 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 3.88 Total: 10.58 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.86 Total: -101.32 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.11 Total: -39.21 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.69 Total: -1.15 kcal Total: -67.20 -0.07 -67.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345168405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.904 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds