Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00393 * 2 1 4 4 H 1.48500 * 109.46961 * 269.99871 * 3 2 1 5 5 H 1.48502 * 109.47157 * 29.99653 * 3 2 1 6 6 H 1.48501 * 109.47473 * 150.00033 * 3 2 1 7 7 C 1.38806 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99715 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47357 * 179.97438 * 10 9 7 12 12 N 1.31140 * 126.55016 * 90.24676 * 11 10 9 13 13 C 1.34491 * 105.61108 * 180.12463 * 12 11 10 14 14 C 1.50706 * 126.28691 * 179.90795 * 13 12 11 15 15 S 1.81406 * 109.47019 * 269.71589 * 14 13 12 16 16 O 1.42098 * 110.54033 * 291.62005 * 15 14 13 17 17 O 1.42102 * 110.53929 * 68.37231 * 15 14 13 18 18 C 1.76198 * 104.44814 * 179.97438 * 15 14 13 19 19 C 1.38238 * 119.99688 * 269.72801 * 18 15 14 20 20 C 1.38236 * 119.99673 * 179.76863 * 19 18 15 21 21 C 1.38236 * 119.99734 * 0.50434 * 20 19 18 22 22 C 1.38232 * 120.00368 * 359.74563 * 21 20 19 23 23 C 1.38227 * 120.00057 * 90.00095 * 18 15 14 24 24 N 1.29946 * 107.42990 * 359.64601 * 13 12 11 25 25 O 1.21300 * 110.24653 * 0.22675 * 24 13 12 26 26 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47039 * 59.99977 * 10 9 7 28 28 H 1.09001 * 109.47301 * 300.00209 * 10 9 7 29 29 H 1.08994 * 109.46790 * 29.71277 * 14 13 12 30 30 H 1.08997 * 109.47305 * 149.71718 * 14 13 12 31 31 H 1.08003 * 120.00163 * 359.97438 * 19 18 15 32 32 H 1.07999 * 120.00050 * 180.23081 * 20 19 18 33 33 H 1.08001 * 119.99658 * 179.72788 * 21 20 19 34 34 H 1.08003 * 120.00436 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.00366 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 7 1.7173 -6.0361 -1.0520 13 6 1.2723 -7.2105 -0.5708 14 6 0.8281 -8.3976 -1.3861 15 16 -0.9520 -8.2747 -1.7129 16 8 -1.6924 -8.4465 -0.5122 17 8 -1.2239 -7.1926 -2.5928 18 6 -1.3248 -9.7109 -2.6631 19 6 -1.2498 -9.6656 -4.0427 20 6 -1.5376 -10.7937 -4.7879 21 6 -1.9105 -11.9642 -4.1541 22 6 -1.9905 -12.0081 -2.7748 23 6 -1.6977 -10.8814 -2.0293 24 7 1.3011 -7.1358 0.7262 25 8 1.7087 -6.0479 1.0750 26 1 -0.4850 0.8401 -0.0004 27 1 3.1243 -3.7315 0.8905 28 1 3.1243 -3.7315 -0.8894 29 1 1.3708 -8.4128 -2.3313 30 1 1.0337 -9.3148 -0.8343 31 1 -0.9631 -8.7497 -4.5381 32 1 -1.4754 -10.7593 -5.8656 33 1 -2.1396 -12.8443 -4.7366 34 1 -2.2823 -12.9225 -2.2795 35 1 -1.7610 -10.9155 -0.9516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347491128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 33.335717 kcal Electronic energy + Delta-G solvation = -23368.828065 eV Core-core repulsion = 19589.484715 eV Total energy + Delta-G solvation = -3779.343350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -45.54045 -39.50774 -37.30425 -36.17307 -36.07090 -33.78368 -32.55434 -31.77694 -31.45748 -30.12409 -28.55317 -25.63450 -23.87306 -23.46876 -23.16395 -21.77651 -19.37463 -18.50986 -18.08569 -17.93345 -17.26193 -16.57547 -16.29379 -16.18451 -15.19499 -15.04390 -14.90626 -14.76803 -14.44604 -14.31990 -13.95412 -13.45085 -13.40810 -13.19989 -12.82998 -12.61431 -12.25384 -12.20495 -12.16231 -12.09146 -11.68720 -11.28796 -11.16372 -11.10928 -11.04224 -10.94749 -10.78869 -10.25649 -9.84848 -9.52719 -9.48477 -9.17622 -8.55764 -6.74009 -6.34389 -4.09946 -0.40908 0.40513 0.85439 1.17104 2.15240 2.53896 2.87038 2.99239 3.17042 3.18644 3.25451 3.27897 3.37836 3.65481 3.72380 4.02129 4.08492 4.36847 4.45731 4.54662 4.59222 4.70331 4.88250 5.02736 5.02940 5.09987 5.22861 5.31712 5.48628 5.58321 5.65111 5.70274 5.77759 5.90385 6.02033 6.04008 6.37909 7.49262 8.16706 8.23627 9.11049 10.73539 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.024110 B = 0.002410 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.045370 B =11616.203052 C =12144.788031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.081 0.919 9 S -0.078 6.078 10 C -0.047 4.047 11 C 0.237 3.763 12 N -0.468 5.468 13 C 0.154 3.846 14 C -0.513 4.513 15 S 2.500 3.500 16 O -0.919 6.919 17 O -0.907 6.907 18 C -0.660 4.660 19 C -0.021 4.021 20 C -0.141 4.141 21 C -0.066 4.066 22 C -0.142 4.142 23 C -0.024 4.024 24 N -0.367 5.367 25 O 0.093 5.907 26 H 0.271 0.729 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -24.225 -6.927 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.136 4.136 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.675 4.675 8 H 0.099 0.901 9 S 0.148 5.852 10 C -0.195 4.195 11 C 0.017 3.983 12 N -0.203 5.203 13 C -0.120 4.120 14 C -0.640 4.640 15 S 2.676 3.324 16 O -0.916 6.916 17 O -0.904 6.904 18 C -0.747 4.747 19 C -0.040 4.040 20 C -0.159 4.159 21 C -0.084 4.084 22 C -0.161 4.161 23 C -0.043 4.043 24 N -0.074 5.074 25 O 0.030 5.970 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.183 0.817 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.325 -24.465 -6.602 25.375 hybrid contribution 2.304 0.563 -0.361 2.400 sum 0.980 -23.902 -6.964 24.915 Atomic orbital electron populations 1.70000 1.06027 1.27910 1.46061 1.25041 0.95130 0.99259 0.94130 0.86056 0.79345 0.80977 0.78492 1.20109 1.20681 1.19481 1.22694 0.94854 0.89937 1.60049 0.90068 1.85356 1.04640 0.98257 1.96973 1.22086 1.04724 0.85392 1.07346 1.28358 0.93319 0.96960 0.79642 1.71973 1.18252 1.01536 1.28538 1.24159 1.04426 0.94876 0.88494 1.28693 1.26675 1.00139 1.08476 1.05680 0.76602 0.74859 0.75257 1.93604 1.66037 1.85639 1.46280 1.93643 1.81650 1.50101 1.65032 1.30617 1.18060 1.18622 1.07375 1.21096 0.92171 0.99062 0.91689 1.21356 1.00932 0.93015 1.00640 1.21546 0.93911 0.98006 0.94918 1.21334 1.01580 0.98822 0.94315 1.21050 0.91585 0.90828 1.00797 1.74652 1.17022 1.01129 1.14598 1.85328 1.58392 1.17517 1.35719 0.91879 0.87487 0.86669 0.81742 0.82388 0.83596 0.84754 0.85122 0.84848 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.08 13.22 55.49 0.73 -24.35 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.53 -14.10 9.50 30.94 0.29 -13.81 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.08 -1.96 21.42 -107.50 -2.30 -4.27 16 10 C -0.05 -0.88 6.30 36.00 0.23 -0.66 16 11 C 0.24 4.39 7.77 -13.05 -0.10 4.29 16 12 N -0.47 -8.65 11.55 -9.87 -0.11 -8.76 16 13 C 0.15 2.51 7.48 -156.37 -1.17 1.34 16 14 C -0.51 -5.63 6.61 36.01 0.24 -5.39 16 15 S 2.50 32.89 5.14 -107.50 -0.55 32.34 16 16 O -0.92 -14.63 17.13 -57.54 -0.99 -15.62 16 17 O -0.91 -15.20 17.12 -57.54 -0.98 -16.18 16 18 C -0.66 -6.64 5.66 -39.59 -0.22 -6.86 16 19 C -0.02 -0.19 9.47 -39.58 -0.37 -0.57 16 20 C -0.14 -0.99 10.05 -39.58 -0.40 -1.39 16 21 C -0.07 -0.41 10.05 -39.58 -0.40 -0.81 16 22 C -0.14 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.02 -0.21 9.47 -39.59 -0.37 -0.58 16 24 N -0.37 -6.40 12.16 30.90 0.38 -6.02 16 25 O 0.09 1.68 11.31 18.11 0.20 1.88 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.11 1.77 8.14 -51.92 -0.42 1.34 16 28 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 29 H 0.16 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.16 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.15 1.19 7.56 -52.48 -0.40 0.79 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.14 1.08 7.57 -52.48 -0.40 0.68 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -36.42 345.79 -9.51 -45.93 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.30 Total: -1.83 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.77 Total: -23.87 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.00 Total: -39.13 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.77 Total: -29.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 30.93 SS G_CDS: -2.86 Total: 28.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.42 -9.51 -45.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347491128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.263 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds