Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46239 * 2 1 4 4 N 1.46498 * 109.47291 * 240.00001 * 2 1 3 5 5 C 1.34781 * 120.00134 * 84.99839 * 4 2 1 6 6 O 1.21560 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.47797 * 119.99688 * 179.97438 * 5 4 2 8 8 C 1.39614 * 120.12983 * 180.02562 * 7 5 4 9 9 C 1.37905 * 119.86026 * 180.27864 * 8 7 5 10 10 C 1.38481 * 120.13791 * 359.49326 * 9 8 7 11 11 Br 1.89096 * 119.86444 * 180.25878 * 10 9 8 12 12 C 1.38476 * 120.26722 * 0.50502 * 10 9 8 13 13 C 1.37908 * 120.13436 * 359.75571 * 12 10 9 14 14 C 1.50695 * 109.47159 * 119.99650 * 2 1 3 15 15 O 1.21290 * 120.00150 * 119.99905 * 14 2 1 16 16 N 1.34783 * 120.00282 * 300.00516 * 14 2 1 17 17 C 1.37088 * 120.00035 * 179.97438 * 16 14 2 18 18 H 1.07997 * 120.00569 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99919 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99712 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47013 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47214 * 119.99992 * 21 19 17 24 24 H 1.48506 * 109.46753 * 240.00230 * 21 19 17 25 25 H 1.09007 * 109.46665 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47789 * 299.99921 * 1 2 3 27 27 H 1.09000 * 109.47158 * 60.00814 * 1 2 3 28 28 H 0.96996 * 120.00025 * 265.00114 * 4 2 1 29 29 H 1.08002 * 120.06614 * 359.97438 * 8 7 5 30 30 H 1.07998 * 119.93260 * 179.74378 * 9 8 7 31 31 H 1.08004 * 119.93066 * 179.72187 * 12 10 9 32 32 H 1.08011 * 120.06425 * 179.97438 * 13 12 10 33 33 H 0.96999 * 119.99485 * 359.97438 * 16 14 2 34 34 H 0.97005 * 119.99538 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8575 1.1611 -2.4119 7 6 2.6404 -0.7149 -3.5637 8 6 2.7753 -0.0210 -4.7677 9 6 3.2306 -0.6780 -5.8915 10 6 3.5636 -2.0205 -5.8250 11 35 4.1941 -2.9118 -7.3689 12 6 3.4320 -2.7141 -4.6337 13 6 2.9727 -2.0695 -3.5043 14 6 2.0323 -0.7103 1.2305 15 8 2.7296 -1.6965 1.1193 16 7 1.7067 -0.2499 2.4546 17 6 2.1632 -0.8964 3.5739 18 1 2.7842 -1.7744 3.4750 19 6 1.8279 -0.4214 4.8360 20 7 1.0728 0.6474 4.9564 21 14 2.4506 -1.3018 6.3613 22 1 3.2747 -2.4692 5.9572 23 1 3.2760 -0.3685 7.1693 24 1 1.2955 -1.7681 7.1698 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.2491 -1.6317 -1.1526 29 1 2.5189 1.0268 -4.8199 30 1 3.3314 -0.1434 -6.8244 31 1 3.6891 -3.7621 -4.5891 32 1 2.8701 -2.6117 -2.5758 33 1 1.1493 0.5390 2.5435 34 1 0.8384 0.9787 5.8375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355690705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = -69.221163 kcal Electronic energy + Delta-G solvation = -20387.276763 eV Core-core repulsion = 16944.261950 eV Total energy + Delta-G solvation = -3443.014813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56653 -40.34428 -39.29260 -36.38665 -35.77688 -33.85314 -33.36374 -32.32971 -31.60092 -30.15657 -27.24633 -25.62846 -24.19844 -23.70365 -21.55551 -21.13274 -20.17532 -19.35589 -17.67259 -17.40978 -16.95603 -16.46380 -16.34635 -16.09309 -15.83879 -15.64357 -15.44043 -14.87948 -14.59182 -14.39183 -14.24470 -13.61235 -13.55655 -13.26814 -12.94196 -12.87723 -12.60238 -12.42746 -12.37037 -12.11331 -11.91790 -11.57491 -11.34446 -11.18489 -10.58941 -10.22673 -10.18213 -10.08833 -9.82332 -8.51048 -6.00814 -0.50642 0.19308 0.48510 1.34888 1.43043 1.56440 1.61382 1.89011 1.92664 2.29956 2.63726 3.05425 3.16237 3.53957 3.64563 3.80534 4.06293 4.12558 4.14764 4.20448 4.23779 4.47382 4.65500 4.78000 4.85428 4.97788 5.03206 5.13765 5.17298 5.25710 5.38878 5.58043 5.91994 6.39657 6.49064 7.01862 7.04706 7.44440 7.94777 8.65962 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.029308 B = 0.002123 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.148162 B =13188.377740 C =13941.030370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 H 0.099 0.901 4 N -0.695 5.695 5 C 0.557 3.443 6 O -0.570 6.570 7 C -0.131 4.131 8 C -0.059 4.059 9 C -0.095 4.095 10 C -0.073 4.073 11 Br -0.035 7.035 12 C -0.096 4.096 13 C -0.078 4.078 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.556 5.556 17 C -0.335 4.335 18 H 0.086 0.914 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.270 1.270 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.412 0.588 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.398 0.602 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -5.298 -24.127 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 H 0.117 0.883 4 N -0.347 5.347 5 C 0.346 3.654 6 O -0.450 6.450 7 C -0.134 4.134 8 C -0.078 4.078 9 C -0.115 4.115 10 C -0.153 4.153 11 Br 0.051 6.949 12 C -0.116 4.116 13 C -0.098 4.098 14 C 0.221 3.779 15 O -0.511 6.511 16 N -0.192 5.192 17 C -0.464 4.464 18 H 0.104 0.896 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.819 3.181 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.195 1.195 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.251 0.749 29 H 0.164 0.836 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.002 -5.357 -24.603 25.358 hybrid contribution -0.082 0.009 1.471 1.473 sum 2.920 -5.349 -23.132 23.921 Atomic orbital electron populations 1.22038 0.91733 1.03157 1.03575 1.20539 0.96361 0.96794 0.83080 0.88320 1.45654 1.65937 1.15028 1.08127 1.18571 0.77208 0.86195 0.83454 1.90743 1.52129 1.16612 1.85564 1.20011 1.04424 0.95149 0.93812 1.21380 0.95118 1.00944 0.90403 1.21315 0.97890 0.92556 0.99717 1.22251 1.03521 0.95930 0.93609 1.96773 1.86795 1.77473 1.33846 1.21305 0.98369 1.01513 0.90407 1.21544 0.95788 0.92858 0.99581 1.20438 0.85149 0.87126 0.85143 1.90471 1.43827 1.30032 1.86777 1.41849 1.45427 1.27556 1.04318 1.19757 1.30855 1.11418 0.84406 0.89644 1.26106 0.96382 0.96900 1.01690 1.69683 1.36328 1.23226 1.26310 0.84832 0.78218 0.78081 0.76983 1.19462 1.19785 1.19549 0.91708 0.90598 0.90584 0.74887 0.83584 0.82060 0.82291 0.83645 0.76739 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.38 71.98 0.68 -3.88 16 2 C 0.14 5.12 2.98 44.24 0.13 5.25 16 3 H 0.10 3.68 7.58 -2.39 -0.02 3.66 16 4 N -0.69 -22.39 4.90 -449.02 -2.20 -24.59 16 5 C 0.56 17.26 7.74 86.77 0.67 17.93 16 6 O -0.57 -20.66 16.01 -3.90 -0.06 -20.72 16 7 C -0.13 -3.17 5.87 -20.09 -0.12 -3.29 16 8 C -0.06 -1.22 9.59 22.52 0.22 -1.01 16 9 C -0.10 -1.58 9.77 22.25 0.22 -1.36 16 10 C -0.07 -1.22 6.23 22.38 0.14 -1.09 16 11 Br -0.03 -0.50 33.69 -20.37 -0.69 -1.19 16 12 C -0.10 -1.63 9.77 22.25 0.22 -1.42 16 13 C -0.08 -1.59 9.54 22.52 0.21 -1.37 16 14 C 0.43 19.88 7.17 87.65 0.63 20.51 16 15 O -0.62 -31.86 15.41 -3.06 -0.05 -31.91 16 16 N -0.56 -27.57 5.18 -306.99 -1.59 -29.16 16 17 C -0.34 -18.25 9.68 84.04 0.81 -17.44 16 18 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 20 N -0.92 -48.04 13.05 21.66 0.28 -47.75 16 21 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.08 2.35 7.56 -2.39 -0.02 2.33 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.41 12.61 5.82 -92.71 -0.54 12.07 16 29 H 0.15 2.99 7.65 -2.91 -0.02 2.97 16 30 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.74 6.40 -2.91 -0.02 2.72 16 33 H 0.40 18.98 7.32 -92.71 -0.68 18.30 16 34 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -64.07 322.55 1.95 -62.13 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.05 Total: 37.00 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 4.28 Total: 12.79 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.51 Total: -101.50 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.11 Total: -52.63 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.69 Total: -1.19 kcal Total: -64.07 1.95 -62.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355690705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.095 kcal (2) G-P(sol) polarization free energy of solvation -64.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds