Wall clock time and date at job start Sat Apr 11 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99963 * 2 1 4 4 H 1.48500 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47007 * 299.99968 * 3 2 1 6 6 H 1.48506 * 109.47370 * 59.99561 * 3 2 1 7 7 C 1.37868 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00455 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47594 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47594 * 179.97438 * 10 9 7 12 12 O 1.21302 * 119.99479 * 5.43233 * 11 10 9 13 13 N 1.34777 * 120.00361 * 185.43563 * 11 10 9 14 14 C 1.47341 * 121.18819 * 354.26484 * 13 11 10 15 15 C 1.53538 * 107.52690 * 221.74639 * 14 13 11 16 16 O 1.42917 * 108.88668 * 301.83721 * 15 14 13 17 17 C 1.35802 * 117.80175 * 49.78651 * 16 15 14 18 18 N 1.32435 * 119.52085 * 159.58008 * 17 16 15 19 19 C 1.31909 * 121.82603 * 179.57453 * 18 17 16 20 20 C 1.38171 * 121.18429 * 0.02562 * 19 18 17 21 21 Br 1.89091 * 120.43800 * 180.35639 * 20 19 18 22 22 C 1.38918 * 119.12298 * 0.08461 * 20 19 18 23 23 C 1.38659 * 118.23728 * 359.97438 * 22 20 19 24 24 H 0.97004 * 119.99736 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46853 * 59.99782 * 9 7 2 26 26 H 1.09000 * 109.47404 * 299.99913 * 9 7 2 27 27 H 1.09001 * 109.47081 * 60.00065 * 10 9 7 28 28 H 1.08997 * 109.47231 * 300.00201 * 10 9 7 29 29 H 1.09000 * 109.84891 * 102.24234 * 14 13 11 30 30 H 1.09004 * 109.90262 * 341.27981 * 14 13 11 31 31 H 1.09001 * 109.56573 * 182.01897 * 15 14 13 32 32 H 1.09005 * 109.56730 * 61.66567 * 15 14 13 33 33 H 1.08005 * 119.40773 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.87425 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2829 -4.9695 -0.0979 13 7 2.1612 -6.1317 0.1118 14 6 3.6342 -6.1685 0.1080 15 6 4.0646 -7.3619 -0.7569 16 8 3.4952 -8.5554 -0.2147 17 6 2.1654 -8.5543 0.0607 18 7 1.5205 -9.7059 0.1689 19 6 0.2313 -9.7581 0.4433 20 6 -0.5076 -8.6056 0.6305 21 35 -2.3525 -8.7052 1.0328 22 6 0.1241 -7.3729 0.5248 23 6 1.4798 -7.3532 0.2342 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 4.0039 -6.2964 1.1253 30 1 4.0273 -5.2440 -0.3151 31 1 5.1517 -7.4419 -0.7535 32 1 3.7105 -7.2194 -1.7779 33 1 -0.2555 -10.7189 0.5230 34 1 -0.4262 -6.4543 0.6653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362098339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:39 Heat of formation + Delta-G solvation = -42.611803 kcal Electronic energy + Delta-G solvation = -21143.674225 eV Core-core repulsion = 17701.813281 eV Total energy + Delta-G solvation = -3441.860944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.79029 -40.64869 -39.57440 -36.82239 -35.68673 -34.04790 -33.44068 -32.35318 -30.94497 -29.56960 -27.81084 -25.70698 -25.52615 -23.73395 -22.55575 -20.54177 -19.72913 -19.02530 -18.66358 -18.17705 -17.39961 -16.91828 -16.61762 -16.46687 -16.30958 -15.64112 -15.18753 -14.97452 -14.73471 -14.49713 -14.23493 -14.02783 -13.57840 -13.25312 -12.89571 -12.80592 -12.64819 -12.44866 -12.08512 -11.96798 -11.67846 -11.63343 -11.54182 -11.33687 -11.25065 -10.58266 -10.49679 -10.10408 -9.17732 -8.18833 -6.32467 -0.39191 -0.14885 0.39659 1.34928 1.38174 1.44243 1.44609 1.57356 1.65962 2.41181 2.42427 3.05408 3.15678 3.32957 3.56296 3.64168 3.71313 3.78448 4.00080 4.14371 4.30626 4.40775 4.45377 4.54461 4.66038 4.71917 4.88468 4.97208 5.26559 5.49080 5.58383 5.77907 5.82932 5.91252 6.14555 6.62857 6.81644 6.90553 7.38422 8.93880 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.003401 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.536802 B = 8230.176010 C =10190.845772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.249 1.249 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.040 3.960 10 C -0.111 4.111 11 C 0.514 3.486 12 O -0.551 6.551 13 N -0.558 5.558 14 C 0.053 3.947 15 C 0.049 3.951 16 O -0.302 6.302 17 C 0.313 3.687 18 N -0.483 5.483 19 C 0.152 3.848 20 C -0.160 4.160 21 Br -0.019 7.019 22 C -0.068 4.068 23 C 0.040 3.960 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.017 1.017 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.144 0.856 31 H 0.180 0.820 32 H 0.078 0.922 33 H 0.204 0.796 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -20.633 0.820 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.099 0.901 9 C 0.003 3.997 10 C -0.150 4.150 11 C 0.307 3.693 12 O -0.429 6.429 13 N -0.284 5.284 14 C -0.067 4.067 15 C -0.026 4.026 16 O -0.210 6.210 17 C 0.130 3.870 18 N -0.203 5.203 19 C -0.007 4.007 20 C -0.243 4.243 21 Br 0.065 6.935 22 C -0.097 4.097 23 C -0.059 4.059 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.162 0.838 31 H 0.198 0.802 32 H 0.096 0.904 33 H 0.221 0.779 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.181 -21.340 0.795 22.231 hybrid contribution -0.578 2.056 0.017 2.136 sum 5.603 -19.284 0.811 20.098 Atomic orbital electron populations 1.70180 1.08325 1.27704 1.51557 1.26089 0.95630 1.03861 0.94717 0.85318 0.79542 0.78322 0.77342 1.17252 1.20938 1.20978 1.21707 0.94158 0.91246 1.50560 0.90102 1.18729 0.93718 0.92291 0.95005 1.21730 0.99446 0.88136 1.05687 1.21907 0.87909 0.85857 0.73606 1.90556 1.16645 1.87036 1.48627 1.46150 1.08987 1.03251 1.69999 1.23260 0.75890 1.03320 1.04240 1.23914 1.02251 0.80160 0.96279 1.85959 1.16331 1.40664 1.78076 1.19229 0.85651 0.87138 0.94944 1.67132 1.09976 1.25896 1.17307 1.22948 0.86749 0.98382 0.92621 1.22845 0.93993 0.96134 1.11329 1.96722 1.04764 1.98780 1.93224 1.22113 0.93462 0.99511 0.94576 1.18879 0.93440 0.86984 1.06610 0.92945 0.99587 0.99839 0.86806 0.86377 0.87254 0.83788 0.80241 0.90379 0.77893 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.29 21.44 0.28 -57.33 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -28.65 9.11 25.60 0.23 -28.42 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.04 2.08 4.28 29.85 0.13 2.21 16 10 C -0.11 -3.89 4.12 29.85 0.12 -3.77 16 11 C 0.51 18.49 7.59 87.66 0.67 19.16 16 12 O -0.55 -24.97 12.89 -3.10 -0.04 -25.01 16 13 N -0.56 -15.43 3.01 -627.51 -1.89 -17.32 16 14 C 0.05 0.83 6.41 86.40 0.55 1.39 16 15 C 0.05 0.64 7.17 72.16 0.52 1.15 16 16 O -0.30 -6.60 10.40 -91.33 -0.95 -7.55 16 17 C 0.31 8.43 7.58 84.88 0.64 9.08 16 18 N -0.48 -12.86 10.38 -308.13 -3.20 -16.06 16 19 C 0.15 3.53 10.92 84.67 0.92 4.46 16 20 C -0.16 -4.31 6.25 22.42 0.14 -4.17 16 21 Br -0.02 -0.46 33.74 -20.37 -0.69 -1.15 16 22 C -0.07 -2.19 8.80 22.53 0.20 -1.99 16 23 C 0.04 1.18 6.33 38.14 0.24 1.42 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.85 8.04 -2.39 -0.02 -0.87 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 27 H 0.11 3.37 8.09 -2.39 -0.02 3.35 16 28 H 0.12 3.42 7.63 -2.39 -0.02 3.40 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.14 1.56 6.45 -2.38 -0.02 1.55 16 31 H 0.18 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.16 6.10 5.26 -2.97 -0.02 6.08 16 Total: -1.00 -76.24 310.71 1.51 -74.72 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.14 Total: 4.58 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.83 Total: 0.68 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -4.80 Total: -90.70 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.99 Total: -32.56 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.69 Total: -1.15 kcal Total: -76.24 1.51 -74.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362098339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.113 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds