Wall clock time and date at job start Sat Apr 11 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48498 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47227 * 300.00516 * 3 2 1 6 6 H 1.48504 * 109.47003 * 60.00686 * 3 2 1 7 7 C 1.39951 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00339 * 174.31196 * 7 2 1 9 9 C 1.41065 * 120.00236 * 354.31801 * 7 2 1 10 10 C 1.40739 * 120.28865 * 334.36788 * 9 7 2 11 11 C 1.37545 * 119.81259 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 119.79160 * 179.97438 * 11 10 9 13 13 C 1.39003 * 120.42068 * 0.02562 * 11 10 9 14 14 C 1.38190 * 120.59942 * 359.73876 * 13 11 10 15 15 C 1.38610 * 120.17411 * 0.51344 * 14 13 11 16 16 N 1.39145 * 120.21135 * 179.76512 * 15 14 13 17 17 C 1.34771 * 120.00239 * 335.21236 * 16 15 14 18 18 O 1.21285 * 120.00114 * 354.15227 * 17 16 15 19 19 C 1.50705 * 120.00083 * 173.87962 * 17 16 15 20 20 N 1.46500 * 109.46845 * 180.27434 * 19 17 16 21 21 C 1.47018 * 121.01757 * 89.99980 * 20 19 17 22 22 S 1.83701 * 103.10833 * 196.70793 * 21 20 19 23 23 C 1.83779 * 94.16318 * 338.08446 * 22 21 20 24 24 C 1.32763 * 121.01640 * 269.71131 * 20 19 17 25 25 O 1.21283 * 121.81133 * 359.67550 * 24 20 19 26 26 H 0.97009 * 119.99967 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.09865 * 359.95959 * 10 9 7 28 28 H 1.07996 * 119.69839 * 180.02562 * 13 11 10 29 29 H 1.08001 * 119.91423 * 180.27560 * 14 13 11 30 30 H 0.96997 * 119.99559 * 155.20822 * 16 15 14 31 31 H 1.08997 * 109.46707 * 300.26885 * 19 17 16 32 32 H 1.08996 * 109.47220 * 60.26983 * 19 17 16 33 33 H 1.08999 * 110.69300 * 315.11713 * 21 20 19 34 34 H 1.09000 * 110.68988 * 78.30533 * 21 20 19 35 35 H 1.09000 * 110.85488 * 139.67334 * 23 22 21 36 36 H 1.08998 * 110.85000 * 263.10055 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8839 2.3964 1.2126 7 6 2.0082 -1.2120 -0.0005 8 1 3.0842 -1.2144 -0.0932 9 6 1.3081 -2.4308 0.1199 10 6 0.0543 -2.4691 0.7581 11 6 -0.6200 -3.6627 0.8696 12 17 -2.1662 -3.7094 1.6575 13 6 -0.0709 -4.8319 0.3563 14 6 1.1567 -4.8133 -0.2779 15 6 1.8601 -3.6251 -0.3994 16 7 3.0985 -3.6063 -1.0336 17 6 3.8457 -4.7266 -1.0863 18 8 3.4895 -5.7217 -0.4913 19 6 5.1208 -4.7449 -1.8894 20 7 5.7401 -6.0690 -1.7923 21 6 5.4155 -7.1297 -2.7572 22 16 6.0115 -8.6519 -1.9191 23 6 7.1819 -7.7520 -0.8246 24 6 6.6158 -6.3460 -0.8337 25 8 6.9423 -5.5200 -0.0078 26 1 -0.4850 0.8401 0.0004 27 1 -0.3770 -1.5639 1.1594 28 1 -0.6107 -5.7626 0.4499 29 1 1.5709 -5.7275 -0.6766 30 1 3.4239 -2.7868 -1.4377 31 1 4.8959 -4.5246 -2.9330 32 1 5.8069 -3.9933 -1.4991 33 1 4.3401 -7.1798 -2.9273 34 1 5.9480 -6.9731 -3.6953 35 1 7.1719 -8.1705 0.1818 36 1 8.1900 -7.7667 -1.2390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410967215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:51 Heat of formation + Delta-G solvation = -36.715897 kcal Electronic energy + Delta-G solvation = -24341.209466 eV Core-core repulsion = 20556.784744 eV Total energy + Delta-G solvation = -3784.424722 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66222 -39.39000 -37.43699 -35.93297 -35.43296 -33.93158 -33.66314 -31.26135 -29.83433 -29.04891 -27.85651 -26.26054 -25.35217 -22.17526 -21.22250 -20.12739 -19.49827 -17.94894 -17.67071 -17.34623 -16.96857 -16.41190 -15.85068 -15.43807 -15.22540 -14.79338 -14.59887 -14.27072 -13.95018 -13.71186 -13.33589 -13.07545 -12.93483 -12.75600 -12.61880 -12.38054 -11.98755 -11.68016 -11.52264 -11.25995 -11.19933 -10.93172 -10.59425 -10.46977 -10.26983 -10.18174 -9.83518 -9.62880 -9.49349 -9.18375 -8.78149 -8.16581 -7.61675 -7.06973 -6.76404 -4.60904 1.16533 1.48007 2.24959 2.30322 2.44258 2.67614 2.96704 3.00144 3.04465 3.17754 3.32634 3.73996 3.76942 3.84873 4.43724 4.70268 4.75981 4.83810 4.88190 5.05596 5.07649 5.20644 5.40551 5.71093 6.22590 6.34123 6.66616 6.72423 6.76303 6.96126 6.97304 7.26652 7.46547 7.65253 7.68231 7.81008 7.85016 8.17435 8.30771 8.57534 8.63709 8.77377 10.00117 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.003446 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.213071 B = 8124.554862 C = 9993.305390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.143 4.143 11 C -0.017 4.017 12 Cl -0.124 7.124 13 C -0.214 4.214 14 C -0.087 4.087 15 C 0.024 3.976 16 N -0.633 5.633 17 C 0.479 3.521 18 O -0.523 6.523 19 C 0.101 3.899 20 N -0.592 5.592 21 C 0.155 3.845 22 S -0.242 6.242 23 C -0.096 4.096 24 C 0.522 3.478 25 O -0.512 6.512 26 H 0.283 0.717 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.406 0.594 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 -7.155 -7.981 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.097 3.903 10 C -0.164 4.164 11 C -0.044 4.044 12 Cl -0.096 7.096 13 C -0.234 4.234 14 C -0.107 4.107 15 C -0.070 4.070 16 N -0.276 5.276 17 C 0.263 3.737 18 O -0.400 6.400 19 C -0.026 4.026 20 N -0.325 5.325 21 C -0.079 4.079 22 S -0.016 6.016 23 C -0.247 4.247 24 C 0.307 3.693 25 O -0.387 6.387 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.242 0.758 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.617 -8.453 -7.224 14.701 hybrid contribution 0.450 2.256 -0.042 2.301 sum 10.066 -6.196 -7.266 13.875 Atomic orbital electron populations 1.69736 1.07407 1.29290 1.35212 1.25926 0.94937 1.01474 0.92226 0.86130 0.80573 0.80550 0.78778 1.18405 1.19795 1.19617 1.19378 0.94861 0.89890 1.44468 0.90234 1.17272 0.92315 0.91038 0.89653 1.21461 0.96335 0.96114 1.02454 1.20812 0.86414 0.95966 1.01162 1.98254 1.31842 1.98972 1.80515 1.20184 0.97962 0.95824 1.09457 1.20634 0.93329 0.96895 0.99866 1.17797 0.87461 0.95694 1.06090 1.42868 1.17754 1.12379 1.54572 1.20856 0.85527 0.84364 0.82905 1.90673 1.71070 1.34014 1.44278 1.21391 0.94489 0.84704 1.02064 1.47223 1.42868 1.13084 1.29353 1.24064 1.05656 0.85021 0.93143 1.88370 1.51873 1.12863 1.48528 1.24202 1.01525 0.94068 1.04938 1.20041 0.78961 0.89630 0.80658 1.90811 1.60553 1.50110 1.37248 0.90547 0.83340 0.88025 0.85878 0.75791 0.86775 0.86378 0.86399 0.87737 0.84408 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.82 10.39 55.55 0.58 -18.24 16 2 C 0.07 1.64 5.36 -17.33 -0.09 1.55 16 3 Si 0.92 17.08 29.56 -169.99 -5.03 12.05 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 7 C -0.46 -10.69 8.42 -37.87 -0.32 -11.01 16 8 H 0.08 1.74 7.07 -52.49 -0.37 1.37 16 9 C 0.10 2.48 5.62 -106.66 -0.60 1.88 16 10 C -0.14 -3.57 8.47 -38.89 -0.33 -3.90 16 11 C -0.02 -0.39 6.31 -39.55 -0.25 -0.64 16 12 Cl -0.12 -2.57 28.94 -51.86 -1.50 -4.07 16 13 C -0.21 -4.86 9.82 -39.32 -0.39 -5.25 16 14 C -0.09 -1.98 8.70 -39.46 -0.34 -2.32 16 15 C 0.02 0.54 6.46 -83.18 -0.54 0.00 16 16 N -0.63 -11.62 5.09 -9.48 -0.05 -11.67 16 17 C 0.48 8.15 7.69 -10.99 -0.08 8.07 16 18 O -0.52 -10.85 13.60 5.55 0.08 -10.77 16 19 C 0.10 1.18 6.04 -5.19 -0.03 1.15 16 20 N -0.59 -6.96 2.32 -177.90 -0.41 -7.37 16 21 C 0.16 1.38 7.84 60.13 0.47 1.86 16 22 S -0.24 -2.46 23.55 -107.50 -2.53 -4.99 16 23 C -0.10 -0.92 7.46 36.43 0.27 -0.65 16 24 C 0.52 6.98 7.67 -11.45 -0.09 6.89 16 25 O -0.51 -8.84 16.94 5.55 0.09 -8.74 16 26 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 27 H 0.15 3.86 5.77 -52.49 -0.30 3.56 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.12 2.74 5.78 -52.49 -0.30 2.44 16 30 H 0.41 6.48 7.51 -40.82 -0.31 6.17 16 31 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.12 1.35 7.53 -51.93 -0.39 0.96 16 33 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -30.84 338.26 -9.34 -40.18 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -3.34 Total: 10.90 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.32 Total: -2.37 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.12 Total: -37.28 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.53 Total: -4.99 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.84 -9.34 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410967215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.460 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds