Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48498 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47227 * 300.00516 * 3 2 1 6 6 H 1.48504 * 109.47003 * 60.00686 * 3 2 1 7 7 C 1.39951 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00339 * 174.31196 * 7 2 1 9 9 C 1.41065 * 120.00236 * 354.31801 * 7 2 1 10 10 C 1.40739 * 120.28865 * 334.36788 * 9 7 2 11 11 C 1.37545 * 119.81259 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 119.79160 * 179.97438 * 11 10 9 13 13 C 1.39003 * 120.42068 * 0.02562 * 11 10 9 14 14 C 1.38190 * 120.59942 * 359.73876 * 13 11 10 15 15 C 1.38610 * 120.17411 * 0.51344 * 14 13 11 16 16 N 1.39145 * 120.21135 * 179.76512 * 15 14 13 17 17 C 1.34771 * 120.00239 * 335.21236 * 16 15 14 18 18 O 1.21285 * 120.00114 * 354.15227 * 17 16 15 19 19 C 1.50705 * 120.00083 * 173.87962 * 17 16 15 20 20 N 1.46500 * 109.46845 * 180.27434 * 19 17 16 21 21 C 1.47018 * 121.01757 * 89.99980 * 20 19 17 22 22 S 1.83701 * 103.10833 * 196.70793 * 21 20 19 23 23 C 1.83779 * 94.16318 * 338.08446 * 22 21 20 24 24 C 1.32763 * 121.01640 * 269.71131 * 20 19 17 25 25 O 1.21283 * 121.81133 * 359.67550 * 24 20 19 26 26 H 0.97009 * 119.99967 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.09865 * 359.95959 * 10 9 7 28 28 H 1.07996 * 119.69839 * 180.02562 * 13 11 10 29 29 H 1.08001 * 119.91423 * 180.27560 * 14 13 11 30 30 H 0.96997 * 119.99559 * 155.20822 * 16 15 14 31 31 H 1.08997 * 109.46707 * 300.26885 * 19 17 16 32 32 H 1.08996 * 109.47220 * 60.26983 * 19 17 16 33 33 H 1.08999 * 110.69300 * 315.11713 * 21 20 19 34 34 H 1.09000 * 110.68988 * 78.30533 * 21 20 19 35 35 H 1.09000 * 110.85488 * 139.67334 * 23 22 21 36 36 H 1.08998 * 110.85000 * 263.10055 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7025 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8839 2.3964 1.2126 7 6 2.0082 -1.2120 -0.0005 8 1 3.0842 -1.2144 -0.0932 9 6 1.3081 -2.4308 0.1199 10 6 0.0543 -2.4691 0.7581 11 6 -0.6200 -3.6627 0.8696 12 17 -2.1662 -3.7094 1.6575 13 6 -0.0709 -4.8319 0.3563 14 6 1.1567 -4.8133 -0.2779 15 6 1.8601 -3.6251 -0.3994 16 7 3.0985 -3.6063 -1.0336 17 6 3.8457 -4.7266 -1.0863 18 8 3.4895 -5.7217 -0.4913 19 6 5.1208 -4.7449 -1.8894 20 7 5.7401 -6.0690 -1.7923 21 6 5.4155 -7.1297 -2.7572 22 16 6.0115 -8.6519 -1.9191 23 6 7.1819 -7.7520 -0.8246 24 6 6.6158 -6.3460 -0.8337 25 8 6.9423 -5.5200 -0.0078 26 1 -0.4850 0.8401 0.0004 27 1 -0.3770 -1.5639 1.1594 28 1 -0.6107 -5.7626 0.4499 29 1 1.5709 -5.7275 -0.6766 30 1 3.4239 -2.7868 -1.4377 31 1 4.8959 -4.5246 -2.9330 32 1 5.8069 -3.9933 -1.4991 33 1 4.3401 -7.1798 -2.9273 34 1 5.9480 -6.9731 -3.6953 35 1 7.1719 -8.1705 0.1818 36 1 8.1900 -7.7667 -1.2390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410967215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = -55.176333 kcal Electronic energy + Delta-G solvation = -24342.009971 eV Core-core repulsion = 20556.784744 eV Total energy + Delta-G solvation = -3785.225226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80840 -40.77176 -39.07139 -37.24318 -36.89810 -35.60375 -35.30687 -32.25301 -31.60835 -30.36917 -29.01883 -27.46759 -26.85472 -23.76242 -22.85648 -21.50510 -20.72067 -19.39407 -18.91349 -18.63126 -18.15367 -17.65012 -17.08556 -16.90466 -16.32042 -16.31814 -16.03215 -15.33311 -15.13405 -15.00748 -14.62998 -14.48654 -14.33681 -14.08344 -13.91263 -13.50981 -13.39376 -13.16995 -13.06720 -12.83291 -12.56111 -12.23750 -12.18772 -12.04601 -11.90308 -11.44798 -11.22608 -11.17004 -11.05148 -10.70841 -10.05742 -9.44318 -8.92535 -8.79912 -8.48112 -6.40445 0.42440 0.61357 0.68956 0.93690 1.29239 1.44171 1.50776 1.54893 1.57123 1.57736 1.72364 2.20473 2.43660 2.70557 3.00891 3.58910 3.74294 4.03374 4.07223 4.15350 4.21840 4.31684 4.38759 4.46401 4.55820 4.80356 4.96057 5.00577 5.23429 5.25706 5.50862 5.70863 5.80260 5.87819 6.03303 6.10230 6.46546 6.64090 6.71855 6.84253 6.90606 7.31527 8.31373 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.003446 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.213071 B = 8124.554862 C = 9993.305390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.275 1.275 7 C -0.473 4.473 8 H 0.091 0.909 9 C 0.075 3.925 10 C -0.169 4.169 11 C -0.027 4.027 12 Cl -0.105 7.105 13 C -0.220 4.220 14 C -0.097 4.097 15 C 0.024 3.976 16 N -0.632 5.632 17 C 0.477 3.523 18 O -0.563 6.563 19 C 0.109 3.891 20 N -0.592 5.592 21 C 0.158 3.842 22 S -0.267 6.267 23 C -0.085 4.085 24 C 0.511 3.489 25 O -0.561 6.561 26 H 0.289 0.711 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.418 0.582 31 H 0.166 0.834 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -6.997 -9.694 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.502 4.502 8 H 0.109 0.891 9 C 0.071 3.929 10 C -0.190 4.190 11 C -0.054 4.054 12 Cl -0.077 7.077 13 C -0.241 4.241 14 C -0.117 4.117 15 C -0.071 4.071 16 N -0.276 5.276 17 C 0.265 3.735 18 O -0.442 6.442 19 C -0.019 4.019 20 N -0.324 5.324 21 C -0.074 4.074 22 S -0.041 6.041 23 C -0.235 4.235 24 C 0.298 3.702 25 O -0.440 6.440 26 H 0.100 0.900 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.256 0.744 31 H 0.183 0.817 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.357 -8.324 -8.982 16.702 hybrid contribution -0.147 2.127 0.492 2.188 sum 11.210 -6.197 -8.490 15.367 Atomic orbital electron populations 1.69817 1.08923 1.30431 1.35566 1.26765 0.95548 1.04522 0.91267 0.85065 0.79519 0.76059 0.78604 1.17492 1.19008 1.19998 1.19651 0.95436 0.90170 1.44984 0.89134 1.17615 0.92702 0.92300 0.90305 1.21430 0.97428 0.96109 1.03990 1.20903 0.87296 0.95789 1.01388 1.98243 1.30407 1.98943 1.80104 1.20407 0.98216 0.96186 1.09286 1.20785 0.93518 0.97179 1.00237 1.17923 0.88870 0.95005 1.05295 1.42898 1.16684 1.13630 1.54355 1.21859 0.86515 0.82979 0.82174 1.90650 1.72390 1.35272 1.45876 1.21513 0.91384 0.85180 1.03774 1.47397 1.41907 1.13679 1.29395 1.24379 1.06192 0.83147 0.93690 1.88496 1.52484 1.14084 1.49061 1.24226 1.02687 0.91409 1.05222 1.20694 0.78883 0.90525 0.80066 1.90783 1.62392 1.51747 1.39057 0.90032 0.84926 0.86583 0.85516 0.74436 0.81697 0.85737 0.86617 0.83430 0.84324 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.61 10.39 21.83 0.23 -39.38 16 2 C 0.03 1.54 5.36 85.25 0.46 2.00 16 3 Si 0.99 34.34 29.56 68.60 2.03 36.37 16 4 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 5 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.47 -22.22 8.42 23.38 0.20 -22.02 16 8 H 0.09 3.90 7.07 -2.91 -0.02 3.88 16 9 C 0.08 3.74 5.62 -21.18 -0.12 3.62 16 10 C -0.17 -8.65 8.47 22.72 0.19 -8.46 16 11 C -0.03 -1.28 6.31 22.29 0.14 -1.14 16 12 Cl -0.11 -4.39 28.94 -2.72 -0.08 -4.47 16 13 C -0.22 -10.12 9.82 22.44 0.22 -9.90 16 14 C -0.10 -4.43 8.70 22.35 0.19 -4.24 16 15 C 0.02 1.11 6.46 38.86 0.25 1.36 16 16 N -0.63 -22.69 5.09 -302.30 -1.54 -24.23 16 17 C 0.48 15.68 7.69 87.66 0.67 16.35 16 18 O -0.56 -23.11 13.60 -3.05 -0.04 -23.15 16 19 C 0.11 2.25 6.04 85.63 0.52 2.76 16 20 N -0.59 -12.44 2.32 -836.26 -1.94 -14.38 16 21 C 0.16 2.34 7.84 127.67 1.00 3.34 16 22 S -0.27 -4.89 23.55 -56.49 -1.33 -6.22 16 23 C -0.08 -1.47 7.46 71.51 0.53 -0.93 16 24 C 0.51 12.90 7.67 88.25 0.68 13.58 16 25 O -0.56 -19.08 16.94 -3.04 -0.05 -19.13 16 26 H 0.29 12.69 8.30 -92.70 -0.77 11.92 16 27 H 0.13 7.16 5.77 -2.91 -0.02 7.14 16 28 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.13 5.68 5.78 -2.91 -0.02 5.66 16 30 H 0.42 12.78 7.51 -92.71 -0.70 12.08 16 31 H 0.17 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.12 2.54 7.53 -2.39 -0.02 2.52 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.11 338.26 2.67 -66.44 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.46 Total: 31.84 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 4.94 Total: -3.68 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.25 Total: -78.00 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.09 Total: -42.28 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -1.33 Total: -6.22 kcal Atomic # 17 Polarization: -4.39 SS G_CDS: -0.08 Total: -4.47 kcal Total: -69.11 2.67 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410967215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.266 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds