Wall clock time and date at job start Sat Apr 11 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47472 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.47317 * 60.00159 * 3 2 1 7 7 C 1.37873 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 C 1.50696 * 109.46873 * 179.97438 * 17 16 14 19 19 C 1.38246 * 120.00425 * 105.00225 * 18 17 16 20 20 C 1.38218 * 120.01116 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.01828 * 0.02562 * 20 19 18 22 22 C 1.38191 * 120.01279 * 359.97438 * 21 20 19 23 23 C 1.38304 * 120.00786 * 284.72128 * 18 17 16 24 24 Br 1.89096 * 120.00751 * 0.03013 * 23 18 17 25 25 H 0.97002 * 119.99862 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 27 27 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 28 28 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 29 29 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 30 30 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 31 31 H 1.00896 * 111.00310 * 63.95536 * 13 11 10 32 32 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 33 33 H 1.08996 * 109.46924 * 300.00162 * 17 16 14 34 34 H 1.09004 * 109.46672 * 60.00015 * 17 16 14 35 35 H 1.08001 * 119.99262 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.99036 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.99195 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00466 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7884 -5.0076 -0.8396 13 7 0.7280 -5.1175 1.2575 14 6 2.4549 -6.1299 -0.1202 15 8 2.7863 -6.7527 0.8664 16 7 2.9583 -6.4598 -1.3260 17 6 3.9062 -7.5705 -1.4452 18 6 4.3127 -7.7314 -2.8873 19 6 5.5615 -7.3101 -3.3047 20 6 5.9346 -7.4581 -4.6273 21 6 5.0590 -8.0270 -5.5336 22 6 3.8105 -8.4484 -5.1173 23 6 3.4387 -8.3058 -3.7923 24 35 1.7332 -8.8887 -3.2205 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8712 -3.6039 0.8922 29 1 2.8725 -3.6047 -0.8878 30 1 1.3475 -5.1012 2.0538 31 1 0.0232 -4.3995 1.3330 32 1 2.6935 -5.9614 -2.1150 33 1 4.7882 -7.3618 -0.8397 34 1 3.4350 -8.4893 -1.0961 35 1 6.2456 -6.8653 -2.5972 36 1 6.9105 -7.1292 -4.9530 37 1 5.3509 -8.1420 -6.5670 38 1 3.1268 -8.8932 -5.8252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:13 Heat of formation + Delta-G solvation = -25.142034 kcal Electronic energy + Delta-G solvation = -20740.677188 eV Core-core repulsion = 17435.406884 eV Total energy + Delta-G solvation = -3305.270304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08839 -39.19310 -35.62498 -34.88536 -32.83741 -32.61014 -31.67627 -29.86643 -29.57252 -27.29807 -25.64655 -23.59813 -22.88565 -21.61018 -20.69358 -19.77472 -17.58640 -16.93611 -16.22420 -16.12850 -15.93366 -15.29407 -14.73939 -14.50752 -14.41251 -14.01944 -13.85265 -13.51852 -13.21459 -13.17856 -12.91740 -12.51906 -12.12238 -11.66862 -11.65052 -11.50182 -11.15485 -11.07748 -10.92660 -10.66250 -10.36182 -9.97813 -9.93758 -9.45031 -9.23852 -9.15965 -8.99288 -8.94273 -8.43742 -8.14846 -6.08086 -4.11041 0.67202 0.85207 1.36716 2.98823 3.07934 3.26183 3.34205 3.37964 3.55586 4.25246 4.39617 4.40019 4.58899 4.86982 4.94309 5.06609 5.21120 5.24477 5.28337 5.33516 5.49895 5.62349 5.65714 5.79332 5.80581 5.98702 6.04047 6.31044 6.39465 6.49480 6.54671 6.89312 7.46253 7.53423 7.63064 7.73315 7.89274 7.94335 8.32003 8.50241 8.95183 9.53853 11.02876 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.003028 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.374254 B = 9243.359752 C =10055.211760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.529 3.471 15 O -0.538 6.538 16 N -0.726 5.726 17 C 0.156 3.844 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.093 4.093 23 C -0.080 4.080 24 Br -0.038 7.038 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.402 0.598 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -19.957 -12.355 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.414 6.414 16 N -0.379 5.379 17 C 0.033 3.967 18 C -0.080 4.080 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.160 4.160 24 Br 0.048 6.952 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.727 -21.240 -11.665 25.435 hybrid contribution 1.121 2.314 -0.480 2.616 sum 8.848 -18.926 -12.145 24.166 Atomic orbital electron populations 1.69961 1.06013 1.26645 1.50566 1.25011 0.94860 0.99292 0.95163 0.86537 0.80103 0.83731 0.77651 1.19770 1.20955 1.20947 1.21219 0.93043 0.90899 1.50926 0.92688 1.19108 0.93739 0.91123 0.97371 1.22376 0.99859 0.93998 1.01435 1.21455 0.94665 0.92211 0.95601 0.88596 1.58729 1.18443 1.55887 1.03164 1.20864 0.80941 0.84400 0.82230 1.90633 1.60228 1.53523 1.36995 1.45930 1.46961 1.34682 1.10363 1.20195 0.93892 0.91728 0.90914 1.19872 0.94217 0.98609 0.95312 1.21175 0.95297 0.98439 0.96476 1.21325 0.99965 0.97942 0.93173 1.21231 0.93338 0.98190 1.00143 1.21150 0.97081 0.99248 0.93824 1.21878 0.93395 1.04668 0.96039 1.96812 1.19454 1.88444 1.90488 0.92950 0.96321 0.96385 0.92694 0.92590 0.84170 0.83078 0.76392 0.90383 0.89937 0.84724 0.85102 0.85029 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.58 4.74 -27.89 -0.13 0.44 16 10 C -0.14 -2.70 4.78 -26.74 -0.13 -2.83 16 11 C 0.08 1.31 3.21 -68.87 -0.22 1.09 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 N -0.83 -14.58 8.93 -5.66 -0.05 -14.63 16 14 C 0.53 8.84 7.08 -10.99 -0.08 8.76 16 15 O -0.54 -10.55 16.25 5.55 0.09 -10.46 16 16 N -0.73 -9.69 5.31 -61.47 -0.33 -10.02 16 17 C 0.16 1.84 5.07 -5.19 -0.03 1.82 16 18 C -0.08 -0.78 5.25 -104.60 -0.55 -1.33 16 19 C -0.09 -0.80 9.67 -39.59 -0.38 -1.19 16 20 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 21 C -0.11 -0.77 10.05 -39.59 -0.40 -1.16 16 22 C -0.09 -0.76 9.79 -39.56 -0.39 -1.15 16 23 C -0.08 -0.79 6.22 -39.52 -0.25 -1.03 16 24 Br -0.04 -0.41 31.93 -68.01 -2.17 -2.58 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.46 6.87 -51.92 -0.36 0.10 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.35 6.12 8.58 -39.29 -0.34 5.78 16 31 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 32 H 0.40 4.92 8.46 -40.82 -0.35 4.58 16 33 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 34 H 0.08 1.05 7.39 -51.93 -0.38 0.66 16 35 H 0.13 0.98 8.00 -52.49 -0.42 0.56 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -31.59 344.64 -9.96 -41.55 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.05 Total: 10.88 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.36 Total: -10.86 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.36 Total: -49.99 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.17 Total: -2.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.59 -9.96 -41.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.410 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds