Wall clock time and date at job start Sat Apr 11 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48498 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47472 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.47317 * 60.00159 * 3 2 1 7 7 C 1.37873 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 54.99686 * 11 10 9 13 13 N 1.46896 * 109.46848 * 294.99714 * 11 10 9 14 14 C 1.50701 * 109.47212 * 174.99684 * 11 10 9 15 15 O 1.21286 * 119.99821 * 99.99758 * 14 11 10 16 16 N 1.34770 * 120.00293 * 280.00118 * 14 11 10 17 17 C 1.46505 * 120.00284 * 179.97438 * 16 14 11 18 18 C 1.50696 * 109.46873 * 179.97438 * 17 16 14 19 19 C 1.38246 * 120.00425 * 105.00225 * 18 17 16 20 20 C 1.38218 * 120.01116 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.01828 * 0.02562 * 20 19 18 22 22 C 1.38191 * 120.01279 * 359.97438 * 21 20 19 23 23 C 1.38304 * 120.00786 * 284.72128 * 18 17 16 24 24 Br 1.89096 * 120.00751 * 0.03013 * 23 18 17 25 25 H 0.97002 * 119.99862 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46946 * 59.99522 * 9 7 2 27 27 H 1.09008 * 109.46848 * 299.99960 * 9 7 2 28 28 H 1.09000 * 109.47017 * 59.99496 * 10 9 7 29 29 H 1.09008 * 109.46970 * 299.99804 * 10 9 7 30 30 H 1.00900 * 111.00550 * 299.99950 * 13 11 10 31 31 H 1.00896 * 111.00310 * 63.95536 * 13 11 10 32 32 H 0.97004 * 119.99647 * 0.02562 * 16 14 11 33 33 H 1.08996 * 109.46924 * 300.00162 * 17 16 14 34 34 H 1.09004 * 109.46672 * 60.00015 * 17 16 14 35 35 H 1.08001 * 119.99262 * 359.97438 * 19 18 17 36 36 H 1.08000 * 119.99036 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.99195 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00466 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 1 0.7884 -5.0076 -0.8396 13 7 0.7280 -5.1175 1.2575 14 6 2.4549 -6.1299 -0.1202 15 8 2.7863 -6.7527 0.8664 16 7 2.9583 -6.4598 -1.3260 17 6 3.9062 -7.5705 -1.4452 18 6 4.3127 -7.7314 -2.8873 19 6 5.5615 -7.3101 -3.3047 20 6 5.9346 -7.4581 -4.6273 21 6 5.0590 -8.0270 -5.5336 22 6 3.8105 -8.4484 -5.1173 23 6 3.4387 -8.3058 -3.7923 24 35 1.7332 -8.8887 -3.2205 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8712 -3.6039 0.8922 29 1 2.8725 -3.6047 -0.8878 30 1 1.3475 -5.1012 2.0538 31 1 0.0232 -4.3995 1.3330 32 1 2.6935 -5.9614 -2.1150 33 1 4.7882 -7.3618 -0.8397 34 1 3.4350 -8.4893 -1.0961 35 1 6.2456 -6.8653 -2.5972 36 1 6.9105 -7.1292 -4.9530 37 1 5.3509 -8.1420 -6.5670 38 1 3.1268 -8.8932 -5.8252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424088321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:12 Heat of formation + Delta-G solvation = -46.059482 kcal Electronic energy + Delta-G solvation = -20741.584236 eV Core-core repulsion = 17435.406884 eV Total energy + Delta-G solvation = -3306.177352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11502 -40.17458 -37.14637 -36.04684 -34.82931 -33.32472 -32.49619 -31.67891 -30.28225 -28.60458 -27.06899 -25.20597 -23.51969 -22.54443 -22.18275 -21.15562 -18.97765 -18.18032 -17.77000 -17.07225 -16.82743 -16.52932 -16.14659 -15.84313 -15.72424 -15.43124 -14.76228 -14.63389 -14.45872 -14.24751 -14.05506 -13.80040 -13.61703 -13.39814 -12.94417 -12.68233 -12.49186 -12.32197 -12.13209 -11.87586 -11.80569 -11.72499 -11.28170 -11.15280 -10.81272 -10.56221 -10.15755 -9.93553 -9.71908 -9.61543 -8.20987 -6.31369 0.01513 0.23233 0.64370 1.39097 1.40610 1.52424 1.62906 2.14292 2.40469 2.70680 3.12811 3.48362 3.73145 3.77441 3.82327 4.04693 4.13758 4.25346 4.27869 4.35417 4.51388 4.57239 4.67029 4.72054 4.85072 4.92445 5.09332 5.20991 5.31970 5.39160 5.44123 5.47271 5.66012 5.81162 5.82738 6.07522 6.21728 6.48430 6.49642 6.84318 7.21211 7.37855 8.90064 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.003028 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.374254 B = 9243.359752 C =10055.211760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.105 0.895 13 N -0.830 5.830 14 C 0.531 3.469 15 O -0.569 6.569 16 N -0.710 5.710 17 C 0.159 3.841 18 C -0.092 4.092 19 C -0.100 4.100 20 C -0.103 4.103 21 C -0.104 4.104 22 C -0.100 4.100 23 C -0.092 4.092 24 Br -0.056 7.056 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.344 0.656 31 H 0.352 0.648 32 H 0.409 0.591 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 -19.823 -14.023 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.123 0.877 13 N -0.361 5.361 14 C 0.318 3.682 15 O -0.447 6.447 16 N -0.362 5.362 17 C 0.036 3.964 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.172 4.172 24 Br 0.029 6.971 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.244 0.756 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.597 -21.119 -13.368 26.774 hybrid contribution 0.579 2.235 -0.039 2.310 sum 10.176 -18.884 -13.407 25.296 Atomic orbital electron populations 1.70074 1.07526 1.27680 1.51446 1.25871 0.95721 1.03002 0.94754 0.85481 0.79059 0.79232 0.77772 1.18888 1.20286 1.20592 1.21646 0.93370 0.92400 1.50713 0.92640 1.18973 0.94048 0.92075 0.95675 1.22120 0.98758 0.93616 1.01427 1.21383 0.94736 0.91404 0.95842 0.87711 1.58742 1.18396 1.55667 1.03306 1.20636 0.80742 0.84045 0.82768 1.90621 1.61327 1.54608 1.38192 1.45830 1.46280 1.34661 1.09474 1.20207 0.93180 0.90412 0.92611 1.19726 0.95235 1.00336 0.94120 1.21380 0.94752 0.98260 0.97576 1.21675 1.01068 0.96974 0.92434 1.21614 0.92450 0.96655 1.01552 1.21397 0.98035 0.99235 0.93266 1.21950 0.92738 1.05588 0.96897 1.96792 1.20814 1.88707 1.90754 0.92759 0.98100 0.97929 0.93529 0.91634 0.84261 0.83267 0.75586 0.90288 0.91044 0.83756 0.82461 0.82162 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.45 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.69 4.78 30.59 0.15 -4.54 16 11 C 0.08 2.81 3.21 44.17 0.14 2.95 16 12 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 13 N -0.83 -29.37 8.93 -171.81 -1.54 -30.91 16 14 C 0.53 17.62 7.08 87.66 0.62 18.24 16 15 O -0.57 -22.33 16.25 -3.05 -0.05 -22.38 16 16 N -0.71 -18.56 5.31 -466.78 -2.48 -21.04 16 17 C 0.16 3.68 5.07 85.63 0.43 4.11 16 18 C -0.09 -1.73 5.25 -19.85 -0.10 -1.83 16 19 C -0.10 -1.49 9.67 22.27 0.22 -1.28 16 20 C -0.10 -1.14 10.05 22.27 0.22 -0.92 16 21 C -0.10 -1.11 10.05 22.26 0.22 -0.88 16 22 C -0.10 -1.42 9.79 22.29 0.22 -1.20 16 23 C -0.09 -1.71 6.22 22.31 0.14 -1.57 16 24 Br -0.06 -1.19 31.93 -20.37 -0.65 -1.84 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.00 0.13 6.87 -2.38 -0.02 0.11 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.34 12.34 8.58 -89.69 -0.77 11.57 16 31 H 0.35 12.61 7.55 -89.70 -0.68 11.93 16 32 H 0.41 9.65 8.46 -92.71 -0.78 8.87 16 33 H 0.08 1.81 7.95 -2.39 -0.02 1.79 16 34 H 0.07 1.83 7.39 -2.39 -0.02 1.81 16 35 H 0.14 1.79 8.00 -2.91 -0.02 1.77 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -67.21 344.64 -0.44 -67.64 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -1.13 Total: 31.65 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.09 Total: -14.23 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.73 Total: -106.19 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -0.65 Total: -1.84 kcal Total: -67.21 -0.44 -67.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.585 kcal (2) G-P(sol) polarization free energy of solvation -67.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds