Wall clock time and date at job start Sat Apr 11 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48493 * 109.47045 * 270.00455 * 3 2 1 5 5 H 1.48504 * 109.46906 * 30.00544 * 3 2 1 6 6 H 1.48499 * 109.47122 * 149.99807 * 3 2 1 7 7 C 1.37872 * 120.00486 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99358 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00312 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99911 * 179.97438 * 10 9 7 12 12 O 1.21364 * 120.00225 * 0.02562 * 11 10 9 13 13 C 1.49328 * 120.00154 * 180.02562 * 11 10 9 14 14 O 1.21391 * 119.99870 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00154 * 179.97438 * 13 11 10 16 16 C 1.39896 * 120.00240 * 185.52839 * 15 13 11 17 17 C 1.38857 * 120.02767 * 24.84679 * 16 15 13 18 18 C 1.38574 * 120.02911 * 179.75835 * 17 16 15 19 19 C 1.39064 * 119.91070 * 0.40381 * 18 17 16 20 20 C 1.38707 * 119.94674 * 359.92278 * 19 18 17 21 21 C 1.38214 * 120.15866 * 359.87083 * 20 19 18 22 22 Cl 1.73603 * 119.99436 * 179.97438 * 21 20 19 23 23 O 1.36181 * 120.73562 * 180.16822 * 19 18 17 24 24 C 1.43160 * 116.73240 * 342.72960 * 23 19 18 25 25 C 1.53466 * 108.25674 * 46.19581 * 24 23 19 26 26 O 1.36141 * 119.31899 * 180.09028 * 18 17 16 27 27 H 0.96998 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46918 * 59.99900 * 9 7 2 29 29 H 1.08996 * 109.46687 * 300.00177 * 9 7 2 30 30 H 0.97000 * 120.00530 * 0.02562 * 10 9 7 31 31 H 0.96997 * 120.00039 * 5.25343 * 15 13 11 32 32 H 1.07999 * 119.98585 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92023 * 179.88791 * 20 19 18 34 34 H 1.09009 * 109.69436 * 286.51540 * 24 23 19 35 35 H 1.08995 * 109.71324 * 165.89809 * 24 23 19 36 36 H 1.08996 * 109.71411 * 180.55587 * 25 24 23 37 37 H 1.09004 * 109.71120 * 59.92752 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3250 -2.8213 -0.0020 12 8 6.1137 -1.8988 -0.0025 13 6 5.8229 -4.2292 -0.0024 14 8 5.0341 -5.1519 -0.0024 15 7 7.1480 -4.4754 -0.0039 16 6 7.6153 -5.7888 -0.1211 17 6 6.8276 -6.7545 -0.7334 18 6 7.2926 -8.0544 -0.8540 19 6 8.5453 -8.3920 -0.3534 20 6 9.3273 -7.4269 0.2639 21 6 8.8657 -6.1294 0.3805 22 17 9.8478 -4.9251 1.1545 23 8 9.0202 -9.6634 -0.4657 24 6 8.0610 -10.6857 -0.7560 25 6 7.1582 -10.1890 -1.8933 26 8 6.5090 -8.9893 -1.4585 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6802 0.8889 29 1 3.8745 -0.6798 -0.8911 30 1 3.3697 -3.3124 -0.0010 31 1 7.7777 -3.7416 0.0722 32 1 5.8540 -6.4916 -1.1198 33 1 10.2994 -7.6900 0.6541 34 1 7.4589 -10.8868 0.1301 35 1 8.5756 -11.5953 -1.0656 36 1 6.4109 -10.9472 -2.1273 37 1 7.7611 -9.9812 -2.7773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427863365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:19 Heat of formation + Delta-G solvation = -133.157798 kcal Electronic energy + Delta-G solvation = -26167.357340 eV Core-core repulsion = 21935.997712 eV Total energy + Delta-G solvation = -4231.359628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61693 -41.93045 -40.19334 -38.95918 -38.33575 -37.44016 -36.64552 -35.69770 -34.43049 -31.95298 -31.50865 -30.35847 -29.32746 -26.62926 -25.49782 -24.67014 -23.48889 -22.07081 -21.60702 -20.42720 -19.85616 -18.99230 -18.83457 -18.23051 -17.86330 -17.22273 -17.04471 -16.82344 -16.65128 -16.03847 -15.99491 -15.69316 -15.60149 -15.38191 -15.07387 -14.87420 -14.73947 -14.45783 -14.38404 -14.03083 -13.74839 -13.22138 -13.13785 -12.76057 -12.69862 -12.47151 -12.20974 -11.96927 -11.91689 -11.70008 -11.62021 -11.17386 -10.93084 -10.78408 -10.20761 -9.71543 -8.95664 -8.39457 -6.48998 -0.39017 -0.09427 0.37790 0.82216 1.07797 1.36982 1.38950 1.50345 1.85026 1.95709 2.19805 2.29196 2.37646 2.57966 2.95569 3.13114 3.31858 3.55918 3.64702 3.95965 3.98199 4.07863 4.27472 4.40601 4.53671 4.59999 4.64413 4.68023 4.81625 4.93027 4.95637 5.11633 5.22074 5.23063 5.68935 5.76286 6.00497 6.23038 6.33819 6.47825 6.60468 6.84735 7.17334 8.75428 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.017911 B = 0.002551 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.907286 B =10972.954771 C =12385.473203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.228 3.772 10 N -0.668 5.668 11 C 0.501 3.499 12 O -0.548 6.548 13 C 0.520 3.480 14 O -0.506 6.506 15 N -0.629 5.629 16 C 0.154 3.846 17 C -0.133 4.133 18 C 0.077 3.923 19 C 0.048 3.952 20 C -0.076 4.076 21 C -0.061 4.061 22 Cl -0.041 7.041 23 O -0.309 6.309 24 C 0.015 3.985 25 C 0.010 3.990 26 O -0.320 6.320 27 H 0.273 0.727 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.415 0.585 31 H 0.432 0.568 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.678 -22.109 -1.926 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.106 3.894 10 N -0.318 5.318 11 C 0.280 3.720 12 O -0.427 6.427 13 C 0.303 3.697 14 O -0.381 6.381 15 N -0.277 5.277 16 C 0.058 3.942 17 C -0.154 4.154 18 C 0.030 3.970 19 C 0.002 3.998 20 C -0.095 4.095 21 C -0.091 4.091 22 Cl -0.012 7.012 23 O -0.224 6.224 24 C -0.059 4.059 25 C -0.064 4.064 26 O -0.235 6.235 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.251 0.749 31 H 0.272 0.728 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.100 0.900 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.509 -21.880 -1.887 31.448 hybrid contribution -0.345 0.851 0.018 0.918 sum 22.164 -21.030 -1.869 30.610 Atomic orbital electron populations 1.69992 1.07951 1.28803 1.50239 1.25658 0.95590 1.02939 0.93291 0.85793 0.79465 0.78632 0.79653 1.18742 1.20070 1.17465 1.21243 0.89863 0.94680 1.53446 0.92701 1.19407 0.93639 0.79061 0.97305 1.45944 1.05737 1.11321 1.68829 1.19911 0.83872 0.88859 0.79320 1.90728 1.55488 1.45862 1.50630 1.20172 0.82982 0.89548 0.77035 1.90751 1.55610 1.45368 1.46336 1.43044 1.07139 1.07971 1.69512 1.17071 0.93071 0.84522 0.99570 1.20439 1.02532 0.89755 1.02660 1.18693 0.91158 0.89773 0.97344 1.18658 0.93173 0.86672 1.01309 1.20190 1.01849 0.88384 0.99127 1.20186 0.92765 0.91679 1.04425 1.98392 1.68958 1.54693 1.79155 1.86311 1.36058 1.12925 1.87101 1.24028 0.92293 0.90742 0.98850 1.24103 0.99613 0.85551 0.97147 1.86363 1.35812 1.28157 1.73119 0.91742 0.95059 0.95152 0.74885 0.72750 0.83246 0.80845 0.90012 0.82058 0.82804 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 2 C 0.03 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.94 42.45 27.47 68.60 1.88 44.34 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.55 -30.42 9.83 25.60 0.25 -30.17 16 8 H 0.05 3.24 7.84 -2.91 -0.02 3.22 16 9 C 0.23 10.79 4.50 85.63 0.38 11.17 16 10 N -0.67 -27.41 5.54 -468.27 -2.59 -30.01 16 11 C 0.50 18.68 7.88 87.23 0.69 19.36 16 12 O -0.55 -21.98 16.48 -3.29 -0.05 -22.04 16 13 C 0.52 16.80 7.69 87.23 0.67 17.47 16 14 O -0.51 -17.67 13.63 -3.37 -0.05 -17.72 16 15 N -0.63 -16.99 5.17 -304.74 -1.58 -18.57 16 16 C 0.15 3.87 6.43 38.18 0.25 4.11 16 17 C -0.13 -3.55 8.63 22.50 0.19 -3.36 16 18 C 0.08 1.77 6.49 22.55 0.15 1.92 16 19 C 0.05 0.94 6.50 22.58 0.15 1.09 16 20 C -0.08 -1.37 9.73 22.38 0.22 -1.15 16 21 C -0.06 -1.27 6.34 22.44 0.14 -1.13 16 22 Cl -0.04 -0.77 27.78 -2.72 -0.08 -0.85 16 23 O -0.31 -4.84 10.42 -83.41 -0.87 -5.71 16 24 C 0.02 0.13 7.26 72.14 0.52 0.65 16 25 C 0.01 0.10 7.26 72.14 0.52 0.63 16 26 O -0.32 -6.70 10.42 -82.94 -0.86 -7.56 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 29 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 30 H 0.41 16.38 7.79 -92.71 -0.72 15.66 16 31 H 0.43 10.69 7.25 -92.71 -0.67 10.02 16 32 H 0.15 4.56 5.78 -2.91 -0.02 4.55 16 33 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.39 337.99 0.43 -67.97 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.28 Total: 22.83 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 4.60 Total: 22.50 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.87 Total: -103.75 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.83 Total: -53.03 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -68.39 0.43 -67.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427863365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.191 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds