Wall clock time and date at job start Sat Apr 11 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38315 * 119.92461 * 2 1 4 4 C 1.38092 * 120.09300 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.93391 * 359.97438 * 4 3 2 6 6 N 1.39757 * 120.07757 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00236 * 24.84626 * 6 5 4 8 8 O 1.21382 * 119.99593 * 5.51976 * 7 6 5 9 9 C 1.49346 * 120.00079 * 185.52566 * 7 6 5 10 10 O 1.21362 * 120.00340 * 359.97438 * 9 7 6 11 11 N 1.34785 * 119.99930 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99905 * 179.97438 * 11 9 7 13 13 C 1.50692 * 109.47049 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00053 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00018 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99972 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47252 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47095 * 119.99596 * 17 15 13 20 20 H 1.48499 * 109.46947 * 239.99920 * 17 15 13 21 21 C 1.38993 * 119.84464 * 359.97438 * 5 4 3 22 22 Br 1.89101 * 120.04982 * 180.02562 * 21 5 4 23 23 C 1.38192 * 119.90429 * 0.28357 * 21 5 4 24 24 H 1.08999 * 109.47217 * 89.99480 * 1 2 3 25 25 H 1.08994 * 109.47538 * 209.99856 * 1 2 3 26 26 H 1.09007 * 109.46465 * 329.99782 * 1 2 3 27 27 H 1.07998 * 119.94939 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.02748 * 179.97438 * 4 3 2 29 29 H 0.97008 * 119.99652 * 204.84153 * 6 5 4 30 30 H 0.96999 * 120.00025 * 359.97438 * 11 9 7 31 31 H 1.09001 * 109.47231 * 300.00112 * 12 11 9 32 32 H 1.09006 * 109.46983 * 59.99648 * 12 11 9 33 33 H 0.96993 * 120.00547 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.97029 * 179.69802 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5779 1.2028 -0.0005 5 6 4.2746 0.0010 -0.0005 6 7 5.6722 0.0016 -0.0016 7 6 6.3460 1.0612 0.4878 8 8 5.7433 1.9704 1.0203 9 6 7.8342 1.1169 0.3749 10 8 8.4368 0.2077 -0.1572 11 7 8.5081 2.1763 0.8648 12 6 9.9679 2.2306 0.7545 13 6 10.4713 3.5087 1.3742 14 1 9.7735 4.2106 1.8066 15 6 11.8226 3.7825 1.3883 16 7 12.6721 2.9281 0.8614 17 14 12.4466 5.3665 2.1571 18 1 11.2975 6.1509 2.6765 19 1 13.3713 5.0441 3.2734 20 1 13.1668 6.1640 1.1321 21 6 3.5785 -1.2020 0.0005 22 35 4.5211 -2.8414 0.0013 23 6 2.1966 -1.1985 -0.0043 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3632 0.8901 0.5139 27 1 1.6549 2.1329 -0.0004 28 1 4.1156 2.1394 -0.0010 29 1 6.1572 -0.7607 -0.3546 30 1 8.0265 2.9029 1.2904 31 1 10.4036 1.3778 1.2750 32 1 10.2542 2.1995 -0.2968 33 1 13.6227 3.1205 0.8716 34 1 1.6547 -2.1327 -0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427866299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:23 Heat of formation + Delta-G solvation = -45.286894 kcal Electronic energy + Delta-G solvation = -20261.819149 eV Core-core repulsion = 16819.842204 eV Total energy + Delta-G solvation = -3441.976945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04103 -39.37722 -38.01439 -35.63956 -34.37089 -32.67042 -32.38459 -31.73751 -29.60318 -27.98655 -26.95198 -24.44578 -23.29336 -22.28149 -21.22546 -19.98160 -18.81465 -17.67302 -16.65569 -16.02295 -15.78726 -15.62755 -15.24866 -14.90617 -14.39968 -14.26336 -14.13124 -13.89936 -13.64301 -13.17519 -12.89373 -12.61250 -12.19996 -12.10124 -11.95812 -11.58816 -11.18641 -11.06405 -10.99497 -10.96806 -10.57575 -10.53249 -10.34981 -9.49787 -9.23394 -9.02830 -8.87232 -8.26092 -8.14969 -6.24882 -4.32395 0.70552 0.97312 1.33527 1.76042 2.49421 3.20930 3.28518 3.29246 3.32270 3.60341 3.92744 4.28922 4.43678 4.58213 4.85673 4.89207 4.96375 5.07305 5.12072 5.28726 5.33938 5.55535 5.59527 5.80124 5.90313 6.11684 6.24145 6.61713 6.88238 7.03339 7.11788 7.32512 7.50044 7.70640 7.83293 8.31275 8.50466 8.78738 9.34079 10.85239 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.002731 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.056430 B =10248.715808 C =11495.001283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.081 4.081 4 C -0.123 4.123 5 C 0.178 3.822 6 N -0.648 5.648 7 C 0.511 3.489 8 O -0.499 6.499 9 C 0.491 3.509 10 O -0.531 6.531 11 N -0.668 5.668 12 C 0.246 3.754 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.123 4.123 22 Br -0.042 7.042 23 C -0.070 4.070 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.426 0.574 30 H 0.405 0.595 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.248 -9.527 -2.781 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.144 4.144 5 C 0.080 3.920 6 N -0.295 5.295 7 C 0.294 3.706 8 O -0.372 6.372 9 C 0.269 3.731 10 O -0.410 6.410 11 N -0.318 5.318 12 C 0.126 3.874 13 C -0.585 4.585 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.205 4.205 22 Br 0.043 6.957 23 C -0.090 4.090 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.266 0.734 30 H 0.240 0.760 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.531 -10.122 -2.808 25.769 hybrid contribution 0.326 1.026 0.409 1.152 sum -23.205 -9.095 -2.399 25.039 Atomic orbital electron populations 1.20752 0.90450 1.03010 1.02471 1.19904 0.96469 0.92485 1.01828 1.21106 0.93445 0.97967 0.97495 1.21481 0.94324 0.97690 1.00861 1.17525 0.82670 0.93022 0.98803 1.43463 1.04276 1.21704 1.60016 1.20992 0.90063 0.81819 0.77695 1.90694 1.69902 1.36596 1.40029 1.19589 0.86341 0.84895 0.82256 1.90754 1.69010 1.37235 1.44000 1.46426 1.11168 1.19590 1.54569 1.19379 0.71417 0.98223 0.98382 1.21229 0.92775 1.04381 1.40092 0.91470 1.24943 0.96442 0.97451 0.95052 1.69967 1.02972 1.35557 1.43685 0.86307 0.78944 0.82459 0.78935 1.19482 1.20709 1.20716 1.21573 0.95111 0.90207 1.13612 1.96747 1.75203 1.25929 1.97814 1.20770 0.90920 0.98717 0.98606 0.91037 0.91443 0.91268 0.84901 0.82611 0.73437 0.76043 0.94610 0.94618 0.92337 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.11 -0.92 5.88 -104.58 -0.62 -1.54 16 3 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 4 C -0.12 -1.53 8.72 -39.38 -0.34 -1.87 16 5 C 0.18 2.35 6.42 -83.71 -0.54 1.81 16 6 N -0.65 -9.46 5.15 -10.28 -0.05 -9.52 16 7 C 0.51 8.60 7.69 -11.64 -0.09 8.51 16 8 O -0.50 -8.63 13.64 5.47 0.07 -8.55 16 9 C 0.49 9.76 7.89 -11.63 -0.09 9.67 16 10 O -0.53 -11.74 16.48 5.49 0.09 -11.65 16 11 N -0.67 -14.15 5.54 -61.94 -0.34 -14.49 16 12 C 0.25 6.29 5.43 -5.20 -0.03 6.26 16 13 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 14 H 0.07 1.70 7.60 -52.48 -0.40 1.30 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.37 13.29 55.43 0.74 -24.63 16 17 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.12 -1.42 6.24 -39.32 -0.25 -1.67 16 22 Br -0.04 -0.46 32.31 -68.01 -2.20 -2.66 16 23 C -0.07 -0.66 9.43 -39.59 -0.37 -1.04 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.16 2.10 5.79 -52.49 -0.30 1.80 16 29 H 0.43 6.03 7.00 -40.82 -0.29 5.75 16 30 H 0.40 7.87 7.79 -40.82 -0.32 7.55 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -29.77 322.60 -8.01 -37.78 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.39 Total: 7.82 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.76 Total: 5.49 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.34 Total: -48.64 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.20 Total: -2.66 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.77 -8.01 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427866299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.508 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds