Wall clock time and date at job start Sat Apr 11 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38315 * 119.92461 * 2 1 4 4 C 1.38092 * 120.09300 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.93391 * 359.97438 * 4 3 2 6 6 N 1.39757 * 120.07757 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00236 * 24.84626 * 6 5 4 8 8 O 1.21382 * 119.99593 * 5.51976 * 7 6 5 9 9 C 1.49346 * 120.00079 * 185.52566 * 7 6 5 10 10 O 1.21362 * 120.00340 * 359.97438 * 9 7 6 11 11 N 1.34785 * 119.99930 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99905 * 179.97438 * 11 9 7 13 13 C 1.50692 * 109.47049 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00053 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00018 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99972 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47252 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47095 * 119.99596 * 17 15 13 20 20 H 1.48499 * 109.46947 * 239.99920 * 17 15 13 21 21 C 1.38993 * 119.84464 * 359.97438 * 5 4 3 22 22 Br 1.89101 * 120.04982 * 180.02562 * 21 5 4 23 23 C 1.38192 * 119.90429 * 0.28357 * 21 5 4 24 24 H 1.08999 * 109.47217 * 89.99480 * 1 2 3 25 25 H 1.08994 * 109.47538 * 209.99856 * 1 2 3 26 26 H 1.09007 * 109.46465 * 329.99782 * 1 2 3 27 27 H 1.07998 * 119.94939 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.02748 * 179.97438 * 4 3 2 29 29 H 0.97008 * 119.99652 * 204.84153 * 6 5 4 30 30 H 0.96999 * 120.00025 * 359.97438 * 11 9 7 31 31 H 1.09001 * 109.47231 * 300.00112 * 12 11 9 32 32 H 1.09006 * 109.46983 * 59.99648 * 12 11 9 33 33 H 0.96993 * 120.00547 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.97029 * 179.69802 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5779 1.2028 -0.0005 5 6 4.2746 0.0010 -0.0005 6 7 5.6722 0.0016 -0.0016 7 6 6.3460 1.0612 0.4878 8 8 5.7433 1.9704 1.0203 9 6 7.8342 1.1169 0.3749 10 8 8.4368 0.2077 -0.1572 11 7 8.5081 2.1763 0.8648 12 6 9.9679 2.2306 0.7545 13 6 10.4713 3.5087 1.3742 14 1 9.7735 4.2106 1.8066 15 6 11.8226 3.7825 1.3883 16 7 12.6721 2.9281 0.8614 17 14 12.4466 5.3665 2.1571 18 1 11.2975 6.1509 2.6765 19 1 13.3713 5.0441 3.2734 20 1 13.1668 6.1640 1.1321 21 6 3.5785 -1.2020 0.0005 22 35 4.5211 -2.8414 0.0013 23 6 2.1966 -1.1985 -0.0043 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3632 0.8901 0.5139 27 1 1.6549 2.1329 -0.0004 28 1 4.1156 2.1394 -0.0010 29 1 6.1572 -0.7607 -0.3546 30 1 8.0265 2.9029 1.2904 31 1 10.4036 1.3778 1.2750 32 1 10.2542 2.1995 -0.2968 33 1 13.6227 3.1205 0.8716 34 1 1.6547 -2.1327 -0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427866299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:22 Heat of formation + Delta-G solvation = -65.025448 kcal Electronic energy + Delta-G solvation = -20262.675077 eV Core-core repulsion = 16819.842204 eV Total energy + Delta-G solvation = -3442.832873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29796 -40.59819 -39.40426 -36.90697 -36.08413 -34.41685 -33.50522 -32.57430 -30.42980 -29.83447 -27.99960 -25.94572 -24.39734 -23.76868 -22.23391 -21.46345 -20.26200 -18.84759 -18.35698 -17.54720 -17.24187 -16.96436 -16.51385 -16.26847 -15.91528 -15.40918 -15.18692 -14.84297 -14.78957 -14.54160 -14.10690 -13.97795 -13.60731 -13.27054 -13.03381 -12.93736 -12.77116 -12.55566 -12.27649 -12.18020 -11.95310 -11.52745 -11.50255 -11.40439 -10.87243 -10.74775 -10.10139 -9.89021 -9.17201 -8.32569 -6.48770 -0.31048 0.11231 0.45565 0.48444 1.13665 1.44151 1.44521 1.58457 1.97413 2.34199 2.54632 2.56698 3.03098 3.33320 3.63814 3.88820 4.10836 4.17755 4.22223 4.54864 4.86704 4.87981 4.92052 4.96314 4.98578 5.15133 5.18935 5.21755 5.29206 5.47795 5.51078 5.74655 5.79303 5.80303 6.31063 6.53800 6.63415 6.94326 7.24188 8.79388 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.002731 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.056430 B =10248.715808 C =11495.001283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.136 4.136 5 C 0.145 3.855 6 N -0.637 5.637 7 C 0.522 3.478 8 O -0.504 6.504 9 C 0.493 3.507 10 O -0.556 6.556 11 N -0.668 5.668 12 C 0.262 3.738 13 C -0.561 4.561 14 H 0.081 0.919 15 C 0.010 3.990 16 N -0.926 5.926 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.127 4.127 22 Br -0.042 7.042 23 C -0.070 4.070 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.141 0.859 29 H 0.426 0.574 30 H 0.414 0.586 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.271 0.729 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.995 -8.826 -2.238 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.099 4.099 4 C -0.157 4.157 5 C 0.048 3.952 6 N -0.284 5.284 7 C 0.305 3.695 8 O -0.378 6.378 9 C 0.273 3.727 10 O -0.436 6.436 11 N -0.319 5.319 12 C 0.141 3.859 13 C -0.598 4.598 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.209 4.209 22 Br 0.043 6.957 23 C -0.090 4.090 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.266 0.734 30 H 0.251 0.749 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.080 0.920 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -26.346 -9.437 -2.269 28.077 hybrid contribution 1.019 0.700 0.185 1.250 sum -25.328 -8.737 -2.084 26.873 Atomic orbital electron populations 1.20852 0.87778 1.04291 1.03704 1.20325 0.98271 0.91662 0.99166 1.21413 0.92379 0.99658 0.96488 1.21483 0.95607 0.96797 1.01799 1.17705 0.81558 0.94214 1.01676 1.43295 1.05238 1.20656 1.59206 1.20114 0.88183 0.82708 0.78534 1.90699 1.69368 1.37018 1.40760 1.20107 0.87994 0.83788 0.80857 1.90732 1.70195 1.37952 1.44685 1.46137 1.09625 1.20656 1.55442 1.18867 0.73838 0.97172 0.96057 1.21588 0.93457 1.04713 1.40071 0.90089 1.25972 0.96640 1.01114 0.95325 1.70101 1.03480 1.37815 1.44992 0.85131 0.78523 0.77826 0.77902 1.18038 1.20303 1.20253 1.21715 0.95951 0.89638 1.13556 1.96749 1.75523 1.25612 1.97814 1.21135 0.90087 1.00208 0.97600 0.89654 0.90165 0.90098 0.82416 0.84130 0.73429 0.74885 0.97642 0.97581 0.92031 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 71.24 0.71 -0.10 16 2 C -0.09 -1.33 5.88 -19.84 -0.12 -1.45 16 3 C -0.08 -1.38 9.69 22.25 0.22 -1.17 16 4 C -0.14 -3.27 8.72 22.40 0.20 -3.08 16 5 C 0.14 3.76 6.42 38.22 0.25 4.00 16 6 N -0.64 -18.83 5.15 -304.78 -1.57 -20.40 16 7 C 0.52 17.87 7.69 87.24 0.67 18.54 16 8 O -0.50 -17.50 13.64 -3.34 -0.05 -17.54 16 9 C 0.49 20.23 7.89 87.24 0.69 20.92 16 10 O -0.56 -25.58 16.48 -3.28 -0.05 -25.63 16 11 N -0.67 -29.19 5.54 -468.24 -2.59 -31.78 16 12 C 0.26 13.99 5.43 85.63 0.46 14.46 16 13 C -0.56 -30.20 9.28 25.60 0.24 -29.97 16 14 H 0.08 4.05 7.60 -2.91 -0.02 4.02 16 15 C 0.01 0.54 5.46 84.66 0.46 1.00 16 16 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 17 Si 0.98 41.99 29.54 68.60 2.03 44.02 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.13 -2.77 6.24 22.44 0.14 -2.63 16 22 Br -0.04 -0.89 32.31 -20.37 -0.66 -1.55 16 23 C -0.07 -1.15 9.43 22.27 0.21 -0.94 16 24 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 26 H 0.08 0.46 8.08 -2.38 -0.02 0.45 16 27 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.14 3.79 5.79 -2.91 -0.02 3.77 16 29 H 0.43 12.32 7.00 -92.70 -0.65 11.67 16 30 H 0.41 16.34 7.79 -92.71 -0.72 15.62 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -65.32 322.60 1.31 -64.01 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.20 Total: 23.29 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.13 Total: 19.60 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.88 Total: -106.19 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.10 Total: -43.18 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.66 Total: -1.55 kcal Total: -65.32 1.31 -64.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427866299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.019 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds