Wall clock time and date at job start Sat Apr 11 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38116 * 120.03010 * 2 1 4 4 C 1.38258 * 120.08793 * 180.25031 * 3 2 1 5 5 C 1.38409 * 120.13958 * 359.45562 * 4 3 2 6 6 Br 1.89098 * 119.97351 * 180.27139 * 5 4 3 7 7 C 1.38170 * 120.05389 * 0.29092 * 5 4 3 8 8 C 1.38915 * 120.02571 * 179.72776 * 2 1 3 9 9 N 1.39726 * 120.07510 * 359.97438 * 8 2 1 10 10 C 1.34779 * 120.00193 * 145.28842 * 9 8 2 11 11 O 1.21370 * 119.99705 * 4.50816 * 10 9 8 12 12 C 1.49354 * 119.99845 * 184.51168 * 10 9 8 13 13 O 1.21365 * 120.00039 * 359.97438 * 12 10 9 14 14 N 1.34779 * 119.99845 * 180.02562 * 12 10 9 15 15 C 1.46495 * 119.99757 * 180.02562 * 14 12 10 16 16 C 1.50707 * 109.46928 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00159 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99958 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99880 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00149 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47089 * 90.00300 * 20 18 16 22 22 H 1.48490 * 109.47351 * 210.00466 * 20 18 16 23 23 H 1.48504 * 109.46825 * 330.00327 * 20 18 16 24 24 H 1.08994 * 109.46844 * 270.27347 * 1 2 3 25 25 H 1.09000 * 109.47038 * 30.27450 * 1 2 3 26 26 H 1.09000 * 109.46996 * 150.27032 * 1 2 3 27 27 H 1.08002 * 119.95796 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.92824 * 179.72440 * 4 3 2 29 29 H 1.08003 * 120.04103 * 179.97438 * 7 5 4 30 30 H 0.96998 * 119.99590 * 325.29160 * 9 8 2 31 31 H 0.97000 * 119.99975 * 359.97438 * 14 12 10 32 32 H 1.08999 * 109.47275 * 299.99908 * 15 14 12 33 33 H 1.09005 * 109.47683 * 60.00091 * 15 14 12 34 34 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5808 1.1972 -0.0052 5 6 4.2770 0.0009 0.0009 6 35 6.1680 0.0084 0.0015 7 6 3.5915 -1.1987 0.0062 8 6 2.2021 -1.2027 0.0057 9 7 1.5056 -2.4140 0.0120 10 6 2.0012 -3.4798 -0.6475 11 8 3.0908 -3.4123 -1.1780 12 6 1.2096 -4.7439 -0.7257 13 8 0.1202 -4.8114 -0.1949 14 7 1.7054 -5.8098 -1.3848 15 6 0.9286 -7.0495 -1.4619 16 6 1.7004 -8.0778 -2.2480 17 1 2.6721 -7.8323 -2.6503 18 6 1.1656 -9.3317 -2.4546 19 7 1.8393 -10.2292 -3.1401 20 14 -0.5155 -9.7562 -1.7593 21 1 -1.5632 -9.4174 -2.7558 22 1 -0.5730 -11.2084 -1.4550 23 1 -0.7467 -8.9800 -0.5146 24 1 -0.3633 0.0049 1.0276 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6580 2.1310 -0.0004 28 1 4.1187 2.1337 -0.0097 29 1 4.1349 -2.1320 0.0105 30 1 0.6654 -2.4878 0.4910 31 1 2.5761 -5.7559 -1.8087 32 1 0.7429 -7.4251 -0.4557 33 1 -0.0222 -6.8524 -1.9574 34 1 1.4632 -11.1115 -3.2851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427880997.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:34 Heat of formation + Delta-G solvation = -41.837505 kcal Electronic energy + Delta-G solvation = -20417.176192 eV Core-core repulsion = 16975.348824 eV Total energy + Delta-G solvation = -3441.827368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13094 -39.47592 -38.07429 -35.53006 -34.46378 -33.35553 -32.44121 -30.67509 -30.32667 -28.43430 -26.73066 -25.06988 -23.12498 -21.82913 -21.26820 -20.15210 -18.82319 -17.51283 -16.90947 -16.30837 -16.08324 -15.84639 -15.33168 -14.99869 -14.48320 -14.23945 -14.16093 -13.80060 -13.49547 -13.27024 -12.89483 -12.85631 -12.49028 -12.32874 -11.96210 -11.72628 -11.39924 -11.14680 -11.04810 -10.86880 -10.49578 -10.41997 -10.06891 -9.60262 -9.38058 -8.93827 -8.89959 -8.48663 -8.41912 -6.28213 -4.32488 0.68437 0.92693 1.39753 1.64078 2.43531 3.19894 3.21661 3.27958 3.33103 3.47737 3.86117 4.25369 4.42492 4.51867 4.74340 4.81924 4.92121 5.05862 5.06042 5.26080 5.28705 5.46289 5.64919 5.79359 5.95469 5.98219 6.06605 6.52740 6.55782 6.77770 6.86735 6.95160 7.20230 7.59194 7.93099 8.29724 8.39630 8.71604 9.28842 10.83504 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002698 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.842548 B =10376.159173 C =11781.301387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 C -0.098 4.098 4 C -0.103 4.103 5 C -0.078 4.078 6 Br -0.048 7.048 7 C -0.090 4.090 8 C 0.151 3.849 9 N -0.649 5.649 10 C 0.509 3.491 11 O -0.496 6.496 12 C 0.494 3.506 13 O -0.537 6.537 14 N -0.662 5.662 15 C 0.218 3.782 16 C -0.550 4.550 17 H 0.083 0.917 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.153 0.847 30 H 0.425 0.575 31 H 0.411 0.589 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 26.073 8.441 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.123 4.123 5 C -0.158 4.158 6 Br 0.038 6.962 7 C -0.112 4.112 8 C 0.056 3.944 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.369 6.369 12 C 0.273 3.727 13 O -0.416 6.416 14 N -0.311 5.311 15 C 0.096 3.904 16 C -0.587 4.587 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.185 1.185 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.170 0.830 30 H 0.264 0.736 31 H 0.247 0.753 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.519 25.729 8.312 27.266 hybrid contribution -1.168 -0.387 0.234 1.253 sum 2.350 25.342 8.545 26.847 Atomic orbital electron populations 1.20830 0.90185 1.03800 1.02962 1.19885 0.96703 0.91562 1.01374 1.20835 0.93304 0.97288 1.00303 1.21086 0.94260 0.96758 1.00242 1.21599 0.90638 0.95667 1.07916 1.96730 1.02511 1.99286 1.97676 1.21301 0.92724 0.98449 0.98695 1.17471 0.90749 0.84850 1.01375 1.43178 1.26430 1.08588 1.51413 1.20841 0.86535 0.85175 0.78289 1.90763 1.19861 1.82637 1.43656 1.19651 0.86555 0.84544 0.81949 1.90732 1.20765 1.83321 1.46826 1.46132 1.22678 1.12210 1.50091 1.19734 0.92193 0.80423 0.98002 1.21043 1.06055 0.96295 1.35357 0.89878 1.24779 0.97737 0.95717 0.94218 1.69872 1.38175 1.05384 1.38961 0.86824 0.84185 0.78186 0.80522 1.19730 1.20736 1.18487 0.90451 0.90609 0.91001 0.84614 0.84865 0.82965 0.73650 0.75309 0.94821 0.95307 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.47 36.01 0.34 -0.51 16 2 C -0.09 -0.87 5.90 -104.41 -0.62 -1.48 16 3 C -0.10 -0.79 9.69 -39.62 -0.38 -1.18 16 4 C -0.10 -0.93 9.78 -39.51 -0.39 -1.31 16 5 C -0.08 -0.87 6.22 -39.54 -0.25 -1.12 16 6 Br -0.05 -0.51 33.70 -68.01 -2.29 -2.80 16 7 C -0.09 -1.15 8.44 -39.35 -0.33 -1.48 16 8 C 0.15 1.80 6.28 -83.75 -0.53 1.27 16 9 N -0.65 -8.14 4.73 -10.30 -0.05 -8.19 16 10 C 0.51 7.98 7.73 -11.63 -0.09 7.89 16 11 O -0.50 -8.55 13.89 5.48 0.08 -8.47 16 12 C 0.49 9.06 7.89 -11.63 -0.09 8.97 16 13 O -0.54 -10.64 16.48 5.48 0.09 -10.55 16 14 N -0.66 -13.37 5.54 -61.94 -0.34 -13.71 16 15 C 0.22 5.12 4.50 -5.19 -0.02 5.10 16 16 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 17 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 20 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.57 7.17 -51.93 -0.37 0.20 16 27 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.15 2.20 6.20 -52.48 -0.33 1.87 16 30 H 0.42 4.60 7.32 -40.82 -0.30 4.30 16 31 H 0.41 7.93 7.79 -40.82 -0.32 7.61 16 32 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 33 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -30.40 319.48 -7.74 -38.13 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.35 Total: 6.86 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.79 Total: 3.14 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.38 Total: -47.05 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.17 Total: -19.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.40 -7.74 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427880997.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.703 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds