Wall clock time and date at job start Sat Apr 11 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38298 * 119.93116 * 2 1 4 4 C 1.38081 * 120.08791 * 180.20994 * 3 2 1 5 5 C 1.38960 * 119.93933 * 359.51707 * 4 3 2 6 6 N 1.39727 * 120.06503 * 180.23067 * 5 4 3 7 7 C 1.34775 * 119.99672 * 144.90803 * 6 5 4 8 8 O 1.21380 * 120.00416 * 4.61212 * 7 6 5 9 9 C 1.49349 * 120.00152 * 184.61705 * 7 6 5 10 10 O 1.21360 * 119.99959 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00390 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99793 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.46779 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00407 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99926 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47144 * 89.99901 * 17 15 13 19 19 H 1.48500 * 109.47014 * 210.00129 * 17 15 13 20 20 H 1.48497 * 109.46840 * 329.99827 * 17 15 13 21 21 C 1.38885 * 119.86398 * 0.25530 * 5 4 3 22 22 C 1.38209 * 119.90863 * 359.97438 * 21 5 4 23 23 Br 1.89105 * 119.96993 * 180.02562 * 22 21 5 24 24 H 1.09002 * 109.47279 * 270.25469 * 1 2 3 25 25 H 1.09005 * 109.47394 * 30.24833 * 1 2 3 26 26 H 1.08994 * 109.47696 * 150.25009 * 1 2 3 27 27 H 1.08000 * 119.95691 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02811 * 179.79523 * 4 3 2 29 29 H 0.96999 * 120.00487 * 324.90066 * 6 5 4 30 30 H 0.96998 * 119.99501 * 0.02562 * 11 9 7 31 31 H 1.09002 * 109.47245 * 299.99900 * 12 11 9 32 32 H 1.08993 * 109.47319 * 60.00507 * 12 11 9 33 33 H 0.96998 * 120.00663 * 179.97438 * 16 15 13 34 34 H 1.07991 * 120.04858 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5778 1.2023 -0.0044 5 6 4.2746 0.0001 0.0014 6 7 5.6719 0.0009 0.0018 7 6 6.3460 -0.9507 0.6774 8 8 5.7424 -1.8559 1.2156 9 6 7.8358 -0.8915 0.7641 10 8 8.4394 0.0138 0.2266 11 7 8.5100 -1.8428 1.4402 12 6 9.9713 -1.7842 1.5256 13 6 10.4748 -2.9553 2.3295 14 1 9.7760 -3.6713 2.7364 15 6 11.8274 -3.1127 2.5455 16 7 12.2668 -4.1344 3.2475 17 14 13.0360 -1.8747 1.8411 18 1 13.2580 -0.7848 2.8249 19 1 14.3260 -2.5514 1.5525 20 1 12.4848 -1.3040 0.5859 21 6 3.5794 -1.2022 0.0061 22 6 2.1973 -1.1991 0.0057 23 35 1.2489 -2.8351 0.0129 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8921 -0.5099 27 1 1.6551 2.1328 -0.0004 28 1 4.1157 2.1388 -0.0077 29 1 6.1567 0.6862 -0.4842 30 1 8.0275 -2.5662 1.8702 31 1 10.3958 -1.8233 0.5224 32 1 10.2700 -0.8550 2.0106 33 1 13.2183 -4.2454 3.3991 34 1 4.1179 -2.1383 0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427888929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:37 Heat of formation + Delta-G solvation = -41.278630 kcal Electronic energy + Delta-G solvation = -20208.371193 eV Core-core repulsion = 16766.568059 eV Total energy + Delta-G solvation = -3441.803134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03937 -39.48272 -38.12857 -35.69140 -34.48650 -32.53522 -32.40202 -31.91085 -29.65974 -28.51740 -27.02958 -24.48301 -23.18175 -22.10288 -21.23561 -20.15306 -18.84872 -17.57643 -16.89426 -16.20558 -15.99894 -15.75818 -15.33410 -15.00110 -14.41587 -14.34298 -14.06500 -13.97333 -13.73124 -13.25680 -12.78870 -12.57502 -12.48331 -12.31729 -12.19512 -11.63526 -11.42857 -11.22325 -11.07860 -10.86525 -10.35601 -10.33138 -10.06450 -9.59814 -9.37755 -9.04135 -8.89525 -8.46853 -8.36302 -6.27822 -4.32094 0.69129 0.92892 1.38816 1.64046 2.44518 3.20324 3.22237 3.28277 3.33562 3.48995 3.87096 4.25763 4.43032 4.57634 4.72072 4.82706 4.93069 5.04903 5.06222 5.29254 5.32882 5.44095 5.62037 5.80182 5.92588 6.02585 6.08781 6.53217 6.56303 6.78889 6.87325 6.96617 7.20810 7.60627 7.93982 8.30290 8.40588 8.71957 9.29239 10.83891 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002511 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.183610 B =11148.141261 C =12200.960442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.122 4.122 5 C 0.146 3.854 6 N -0.650 5.650 7 C 0.509 3.491 8 O -0.498 6.498 9 C 0.495 3.505 10 O -0.537 6.537 11 N -0.662 5.662 12 C 0.218 3.782 13 C -0.549 4.549 14 H 0.083 0.917 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.261 1.261 21 C -0.090 4.090 22 C -0.075 4.075 23 Br -0.044 7.044 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.425 0.575 30 H 0.411 0.589 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.558 9.489 -8.683 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.116 4.116 4 C -0.143 4.143 5 C 0.051 3.949 6 N -0.297 5.297 7 C 0.292 3.708 8 O -0.370 6.370 9 C 0.273 3.727 10 O -0.416 6.416 11 N -0.312 5.312 12 C 0.096 3.904 13 C -0.587 4.587 14 H 0.101 0.899 15 C -0.125 4.125 16 N -0.524 5.524 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.185 1.185 21 C -0.111 4.111 22 C -0.155 4.155 23 Br 0.042 6.958 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.264 0.736 30 H 0.247 0.753 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.618 8.709 -8.547 28.376 hybrid contribution 1.067 0.904 -0.231 1.417 sum -24.552 9.613 -8.778 27.789 Atomic orbital electron populations 1.20964 0.90227 1.03608 1.03112 1.19804 0.96715 0.91489 0.99671 1.20795 0.93173 0.97332 1.00319 1.21088 0.94539 0.96797 1.01869 1.17632 0.82466 0.93680 1.01116 1.43166 1.04274 1.31610 1.50691 1.20825 0.89714 0.81917 0.78352 1.90766 1.69767 1.32696 1.43817 1.19655 0.86713 0.84340 0.81979 1.90731 1.69294 1.34728 1.46889 1.46133 1.10165 1.25530 1.49328 1.19731 0.74155 0.98467 0.98002 1.21042 0.93715 1.09401 1.34562 0.89884 1.24780 0.98023 0.95419 0.94235 1.69870 1.15163 1.28935 1.38447 0.86822 0.80806 0.81525 0.80557 1.19732 1.20739 1.18488 1.21286 0.92102 0.99084 0.98666 1.21549 0.94183 0.91488 1.08287 1.96690 1.74767 1.26800 1.97567 0.90500 0.91029 0.90553 0.84612 0.84658 0.73646 0.75316 0.94835 0.95305 0.92082 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.55 36.00 0.34 -0.49 16 2 C -0.07 -0.68 5.88 -104.56 -0.62 -1.30 16 3 C -0.10 -0.78 9.69 -39.62 -0.38 -1.17 16 4 C -0.12 -1.11 9.97 -39.37 -0.39 -1.50 16 5 C 0.15 1.72 6.30 -83.75 -0.53 1.19 16 6 N -0.65 -8.10 5.32 -10.30 -0.05 -8.16 16 7 C 0.51 8.01 7.73 -11.63 -0.09 7.92 16 8 O -0.50 -8.60 13.91 5.47 0.08 -8.53 16 9 C 0.49 9.11 7.89 -11.63 -0.09 9.02 16 10 O -0.54 -10.73 16.48 5.49 0.09 -10.64 16 11 N -0.66 -13.44 5.54 -61.94 -0.34 -13.78 16 12 C 0.22 5.14 4.50 -5.19 -0.02 5.12 16 13 C -0.55 -14.80 9.83 -34.44 -0.34 -15.14 16 14 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 17 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 C -0.09 -1.15 8.43 -39.35 -0.33 -1.48 16 22 C -0.07 -0.85 6.22 -39.55 -0.25 -1.09 16 23 Br -0.04 -0.46 31.77 -68.01 -2.16 -2.62 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.53 6.64 -51.93 -0.34 0.19 16 27 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.43 4.49 8.30 -40.82 -0.34 4.15 16 30 H 0.41 7.96 7.79 -40.82 -0.32 7.64 16 31 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 32 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 34 H 0.15 2.19 6.22 -52.49 -0.33 1.87 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -30.65 318.86 -7.64 -38.29 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.36 Total: 6.65 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.79 Total: 3.20 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.38 Total: -47.14 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.17 Total: -19.16 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.16 Total: -2.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.65 -7.64 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427888929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.988 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds