Wall clock time and date at job start Sat Apr 11 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38298 * 119.93116 * 2 1 4 4 C 1.38081 * 120.08791 * 180.20994 * 3 2 1 5 5 C 1.38960 * 119.93933 * 359.51707 * 4 3 2 6 6 N 1.39727 * 120.06503 * 180.23067 * 5 4 3 7 7 C 1.34775 * 119.99672 * 144.90803 * 6 5 4 8 8 O 1.21380 * 120.00416 * 4.61212 * 7 6 5 9 9 C 1.49349 * 120.00152 * 184.61705 * 7 6 5 10 10 O 1.21360 * 119.99959 * 0.02562 * 9 7 6 11 11 N 1.34784 * 120.00390 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99793 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.46779 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00173 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00407 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99926 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47144 * 89.99901 * 17 15 13 19 19 H 1.48500 * 109.47014 * 210.00129 * 17 15 13 20 20 H 1.48497 * 109.46840 * 329.99827 * 17 15 13 21 21 C 1.38885 * 119.86398 * 0.25530 * 5 4 3 22 22 C 1.38209 * 119.90863 * 359.97438 * 21 5 4 23 23 Br 1.89105 * 119.96993 * 180.02562 * 22 21 5 24 24 H 1.09002 * 109.47279 * 270.25469 * 1 2 3 25 25 H 1.09005 * 109.47394 * 30.24833 * 1 2 3 26 26 H 1.08994 * 109.47696 * 150.25009 * 1 2 3 27 27 H 1.08000 * 119.95691 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.02811 * 179.79523 * 4 3 2 29 29 H 0.96999 * 120.00487 * 324.90066 * 6 5 4 30 30 H 0.96998 * 119.99501 * 0.02562 * 11 9 7 31 31 H 1.09002 * 109.47245 * 299.99900 * 12 11 9 32 32 H 1.08993 * 109.47319 * 60.00507 * 12 11 9 33 33 H 0.96998 * 120.00663 * 179.97438 * 16 15 13 34 34 H 1.07991 * 120.04858 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5778 1.2023 -0.0044 5 6 4.2746 0.0001 0.0014 6 7 5.6719 0.0009 0.0018 7 6 6.3460 -0.9507 0.6774 8 8 5.7424 -1.8559 1.2156 9 6 7.8358 -0.8915 0.7641 10 8 8.4394 0.0138 0.2266 11 7 8.5100 -1.8428 1.4402 12 6 9.9713 -1.7842 1.5256 13 6 10.4748 -2.9553 2.3295 14 1 9.7760 -3.6713 2.7364 15 6 11.8274 -3.1127 2.5455 16 7 12.2668 -4.1344 3.2475 17 14 13.0360 -1.8747 1.8411 18 1 13.2580 -0.7848 2.8249 19 1 14.3260 -2.5514 1.5525 20 1 12.4848 -1.3040 0.5859 21 6 3.5794 -1.2022 0.0061 22 6 2.1973 -1.1991 0.0057 23 35 1.2489 -2.8351 0.0129 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8921 -0.5099 27 1 1.6551 2.1328 -0.0004 28 1 4.1157 2.1388 -0.0077 29 1 6.1567 0.6862 -0.4842 30 1 8.0275 -2.5662 1.8702 31 1 10.3958 -1.8233 0.5224 32 1 10.2700 -0.8550 2.0106 33 1 13.2183 -4.2454 3.3991 34 1 4.1179 -2.1383 0.0102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427888929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:37 Heat of formation + Delta-G solvation = -62.680749 kcal Electronic energy + Delta-G solvation = -20209.299258 eV Core-core repulsion = 16766.568059 eV Total energy + Delta-G solvation = -3442.731199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.20661 -40.59790 -39.40552 -36.89471 -36.06729 -34.45628 -33.27171 -32.72160 -30.46714 -30.34805 -27.97980 -25.82547 -24.12070 -23.58397 -22.28229 -21.52105 -20.23840 -18.75595 -18.56829 -17.49328 -17.30720 -16.92925 -16.53785 -16.37482 -15.96388 -15.36930 -15.11879 -14.95599 -14.80462 -14.55591 -14.42060 -14.10288 -13.49434 -13.19823 -13.13794 -13.04461 -12.70574 -12.58209 -12.34523 -12.06129 -11.92287 -11.71316 -11.23555 -11.12870 -10.94141 -10.78394 -10.20986 -9.84785 -9.22303 -8.40542 -6.50486 -0.21029 0.10110 0.43887 0.59013 1.19786 1.36309 1.38370 1.49620 1.99308 2.28267 2.54081 2.59632 2.94382 3.34117 3.76399 3.88158 4.02671 4.18084 4.30741 4.61311 4.63277 4.71503 4.82066 4.94333 4.97789 5.04328 5.10502 5.18809 5.22326 5.26503 5.39779 5.73884 5.81161 6.03760 6.40170 6.51097 6.64559 6.85697 7.16024 8.74477 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.002511 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.183610 B =11148.141261 C =12200.960442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.089 4.089 4 C -0.110 4.110 5 C 0.121 3.879 6 N -0.630 5.630 7 C 0.517 3.483 8 O -0.518 6.518 9 C 0.500 3.500 10 O -0.549 6.549 11 N -0.672 5.672 12 C 0.229 3.771 13 C -0.556 4.556 14 H 0.053 0.947 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.944 3.056 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.250 1.250 21 C -0.110 4.110 22 C -0.093 4.093 23 Br -0.047 7.047 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.165 0.835 29 H 0.435 0.565 30 H 0.413 0.587 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.274 0.726 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.941 12.563 -9.733 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C -0.108 4.108 4 C -0.130 4.130 5 C 0.026 3.974 6 N -0.278 5.278 7 C 0.299 3.701 8 O -0.393 6.393 9 C 0.280 3.720 10 O -0.428 6.428 11 N -0.321 5.321 12 C 0.107 3.893 13 C -0.594 4.594 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.570 5.570 17 Si 0.766 3.234 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.174 1.174 21 C -0.132 4.132 22 C -0.173 4.173 23 Br 0.038 6.962 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.182 0.818 29 H 0.275 0.725 30 H 0.249 0.751 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.046 11.815 -9.624 31.044 hybrid contribution 1.322 -0.043 0.084 1.325 sum -25.724 11.772 -9.540 29.855 Atomic orbital electron populations 1.21042 0.88383 1.04643 1.03859 1.20220 0.98139 0.91085 0.97867 1.21267 0.92860 0.98328 0.98377 1.21435 0.95114 0.96646 0.99805 1.17821 0.81675 0.94554 1.03306 1.42961 1.04878 1.30538 1.49411 1.20178 0.88217 0.82654 0.79092 1.90777 1.69585 1.33740 1.45211 1.20008 0.88007 0.83249 0.80696 1.90713 1.70098 1.34968 1.47047 1.45977 1.09091 1.26561 1.50504 1.19388 0.76102 0.96836 0.97004 1.21254 0.93623 1.09898 1.34631 0.92897 1.25687 1.00051 0.97331 0.94497 1.69996 1.15903 1.31032 1.40110 0.85763 0.78274 0.79080 0.80237 1.18677 1.20053 1.17403 1.21165 0.92953 0.98676 1.00421 1.21695 0.93796 0.92391 1.09427 1.96670 1.74492 1.27382 1.97623 0.89757 0.88520 0.91056 0.80772 0.81784 0.72477 0.75052 0.95085 0.95177 0.91720 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.55 71.23 0.68 -0.61 16 2 C -0.07 -1.12 5.88 -19.82 -0.12 -1.23 16 3 C -0.09 -1.08 9.69 22.25 0.22 -0.87 16 4 C -0.11 -1.62 9.97 22.41 0.22 -1.39 16 5 C 0.12 2.67 6.30 38.21 0.24 2.91 16 6 N -0.63 -14.99 5.32 -304.85 -1.62 -16.61 16 7 C 0.52 16.17 7.73 87.24 0.67 16.85 16 8 O -0.52 -18.33 13.91 -3.34 -0.05 -18.37 16 9 C 0.50 18.28 7.89 87.24 0.69 18.97 16 10 O -0.55 -21.30 16.48 -3.28 -0.05 -21.36 16 11 N -0.67 -27.57 5.54 -468.24 -2.59 -30.17 16 12 C 0.23 10.81 4.50 85.63 0.38 11.20 16 13 C -0.56 -30.65 9.83 25.60 0.25 -30.40 16 14 H 0.05 3.15 7.84 -2.91 -0.02 3.13 16 15 C 0.02 1.38 5.47 84.65 0.46 1.85 16 16 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 17 Si 0.94 42.31 27.47 68.60 1.88 44.19 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 21 C -0.11 -2.82 8.43 22.42 0.19 -2.63 16 22 C -0.09 -2.02 6.22 22.29 0.14 -1.88 16 23 Br -0.05 -0.99 31.77 -20.37 -0.65 -1.64 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.10 0.55 8.09 -2.38 -0.02 0.53 16 26 H 0.07 0.85 6.64 -2.39 -0.02 0.83 16 27 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 28 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 29 H 0.43 8.39 8.30 -92.71 -0.77 7.62 16 30 H 0.41 16.57 7.79 -92.71 -0.72 15.85 16 31 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 32 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.13 3.83 6.22 -2.92 -0.02 3.81 16 Total: -1.00 -67.32 318.86 0.88 -66.44 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.38 Total: 20.10 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.03 Total: 12.77 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.92 Total: -102.14 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.10 Total: -39.73 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 35 Polarization: -0.99 SS G_CDS: -0.65 Total: -1.64 kcal Total: -67.32 0.88 -66.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427888929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds