Wall clock time and date at job start Sat Apr 11 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38209 * 120.04165 * 2 1 4 4 Br 1.89102 * 119.97488 * 359.95526 * 3 2 1 5 5 C 1.38364 * 120.05220 * 180.23360 * 3 2 1 6 6 C 1.38298 * 120.14033 * 359.48789 * 5 3 2 7 7 C 1.38074 * 120.08904 * 0.51356 * 6 5 3 8 8 C 1.38890 * 120.04198 * 179.97438 * 2 1 3 9 9 N 1.39729 * 120.07042 * 0.04404 * 8 2 1 10 10 C 1.34779 * 120.00047 * 204.83104 * 9 8 2 11 11 O 1.21383 * 119.99627 * 5.52583 * 10 9 8 12 12 C 1.49348 * 120.00067 * 185.51779 * 10 9 8 13 13 O 1.21361 * 120.00216 * 0.02562 * 12 10 9 14 14 N 1.34779 * 120.00067 * 180.02562 * 12 10 9 15 15 C 1.46492 * 120.00173 * 180.02562 * 14 12 10 16 16 C 1.50695 * 109.47448 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00054 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00271 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00155 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00091 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47080 * 60.00129 * 20 18 16 22 22 H 1.48498 * 109.47254 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47489 * 300.00718 * 20 18 16 24 24 H 1.09000 * 109.47348 * 90.00003 * 1 2 3 25 25 H 1.08994 * 109.47083 * 210.00015 * 1 2 3 26 26 H 1.09004 * 109.47122 * 329.99976 * 1 2 3 27 27 H 1.08004 * 119.92975 * 179.72059 * 5 3 2 28 28 H 1.08002 * 119.95680 * 180.23252 * 6 5 3 29 29 H 1.08002 * 120.03159 * 179.72660 * 7 6 5 30 30 H 0.96996 * 119.99945 * 24.83369 * 9 8 2 31 31 H 0.96999 * 119.99951 * 0.02562 * 14 12 10 32 32 H 1.09002 * 109.47003 * 300.00110 * 15 14 12 33 33 H 1.09001 * 109.47531 * 59.99500 * 15 14 12 34 34 H 0.96998 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1964 0.0000 4 35 1.2539 2.8344 -0.0013 5 6 3.5826 1.1967 -0.0049 6 6 4.2773 0.0008 0.0009 7 6 3.5919 -1.1978 0.0009 8 6 2.2024 -1.2023 0.0005 9 7 1.5061 -2.4138 0.0002 10 6 2.0884 -3.5259 0.4908 11 8 3.1767 -3.4563 1.0238 12 6 1.3945 -4.8436 0.3788 13 8 0.3065 -4.9132 -0.1544 14 7 1.9766 -5.9556 0.8699 15 6 1.2962 -7.2483 0.7595 16 6 2.1521 -8.3212 1.3818 17 1 3.1076 -8.0658 1.8157 18 6 1.7154 -9.6289 1.3972 19 7 0.5517 -9.9399 0.8693 20 14 2.7767 -10.9590 2.1679 21 1 3.0068 -10.6407 3.6001 22 1 2.0864 -12.2691 2.0573 23 1 4.0804 -11.0243 1.4599 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 4.1213 2.1328 -0.0094 28 1 5.3573 0.0045 0.0009 29 1 4.1354 -2.1312 0.0010 30 1 0.6037 -2.4544 -0.3532 31 1 2.8460 -5.9000 1.2964 32 1 0.3391 -7.2006 1.2791 33 1 1.1276 -7.4816 -0.2918 34 1 0.2447 -10.8599 0.8799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427903104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:40 Heat of formation + Delta-G solvation = -42.732805 kcal Electronic energy + Delta-G solvation = -20352.707129 eV Core-core repulsion = 16910.840938 eV Total energy + Delta-G solvation = -3441.866191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11593 -39.39364 -37.99158 -35.45465 -34.33676 -33.37015 -32.43733 -31.35605 -29.35282 -27.82468 -27.13964 -24.99506 -23.05149 -21.92528 -21.41588 -19.95664 -18.82260 -17.49120 -16.72125 -16.20544 -15.97893 -15.66575 -15.31312 -14.93658 -14.47787 -14.31073 -14.19194 -13.75310 -13.45799 -13.19391 -12.79807 -12.54787 -12.10378 -12.00784 -11.97256 -11.79058 -11.39245 -11.18635 -11.03693 -10.93863 -10.50988 -10.40702 -10.35480 -9.55075 -9.23551 -8.89859 -8.88124 -8.34246 -8.17800 -6.26199 -4.34058 0.79703 0.87792 1.31157 1.74636 2.51468 3.22174 3.26999 3.28923 3.29431 3.59298 3.91938 4.27640 4.43675 4.61261 4.72805 4.93234 5.06918 5.10590 5.16639 5.28834 5.33239 5.37617 5.80293 5.87360 5.93834 6.04080 6.17262 6.61413 6.88425 7.00633 7.10555 7.30123 7.48084 7.70496 7.81696 8.28899 8.47751 8.76370 9.32465 10.83787 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002149 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.260585 B =13026.049366 C =13612.294314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.073 4.073 4 Br -0.048 7.048 5 C -0.108 4.108 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.158 3.842 9 N -0.646 5.646 10 C 0.509 3.491 11 O -0.500 6.500 12 C 0.491 3.509 13 O -0.534 6.534 14 N -0.668 5.668 15 C 0.246 3.754 16 C -0.549 4.549 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.425 0.575 31 H 0.405 0.595 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 26.385 -2.811 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.153 4.153 4 Br 0.037 6.963 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.062 3.938 9 N -0.292 5.292 10 C 0.293 3.707 11 O -0.374 6.374 12 C 0.269 3.731 13 O -0.413 6.413 14 N -0.317 5.317 15 C 0.127 3.873 16 C -0.587 4.587 17 H 0.084 0.916 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.264 0.736 31 H 0.240 0.760 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.590 26.680 -2.840 26.956 hybrid contribution 0.692 -1.103 0.426 1.370 sum 3.282 25.577 -2.414 25.899 Atomic orbital electron populations 1.20981 0.89907 1.04210 1.03472 1.19442 0.96675 0.90258 1.02802 1.21392 0.94543 0.90598 1.08781 1.96673 1.75819 1.26131 1.97664 1.21072 0.91813 0.99212 1.00796 1.21056 1.00340 0.91121 0.99189 1.21619 0.92359 1.00397 0.98951 1.17515 0.91506 0.84276 1.00507 1.43272 1.19682 1.06158 1.60107 1.20980 0.86019 0.85937 0.77796 1.90701 1.20335 1.86198 1.40126 1.19612 0.86458 0.84807 0.82188 1.90747 1.20324 1.86103 1.44124 1.46434 1.22734 1.08125 1.54432 1.19365 0.93388 0.76225 0.98352 1.21152 1.05065 0.92245 1.40204 0.91574 1.24935 0.95248 0.98612 0.95031 1.69949 1.19000 1.19717 1.43530 0.86415 0.80162 0.80267 0.79767 1.19937 1.21001 1.19931 0.90065 0.90862 0.89923 0.84962 0.84632 0.82869 0.73637 0.76031 0.94632 0.94630 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.99 36.01 0.32 -0.84 16 2 C -0.09 -0.95 5.90 -104.39 -0.62 -1.56 16 3 C -0.07 -0.75 6.22 -39.55 -0.25 -0.99 16 4 Br -0.05 -0.43 31.78 -68.01 -2.16 -2.59 16 5 C -0.11 -1.01 9.78 -39.51 -0.39 -1.40 16 6 C -0.10 -0.95 10.04 -39.62 -0.40 -1.35 16 7 C -0.11 -1.37 8.72 -39.37 -0.34 -1.72 16 8 C 0.16 1.96 6.41 -83.75 -0.54 1.42 16 9 N -0.65 -8.53 4.96 -10.30 -0.05 -8.58 16 10 C 0.51 8.14 7.69 -11.63 -0.09 8.05 16 11 O -0.50 -8.42 13.64 5.47 0.07 -8.35 16 12 C 0.49 9.39 7.89 -11.63 -0.09 9.30 16 13 O -0.53 -11.33 16.48 5.49 0.09 -11.24 16 14 N -0.67 -13.85 5.54 -61.95 -0.34 -14.19 16 15 C 0.25 6.22 5.43 -5.20 -0.03 6.19 16 16 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 17 H 0.07 1.65 7.60 -52.48 -0.40 1.25 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 20 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.66 6.99 -51.93 -0.36 0.29 16 26 H 0.08 0.70 6.65 -51.93 -0.35 0.35 16 27 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.15 2.03 5.79 -52.49 -0.30 1.73 16 30 H 0.42 5.05 6.88 -40.82 -0.28 4.76 16 31 H 0.40 7.72 7.79 -40.82 -0.32 7.40 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -29.45 318.88 -7.96 -37.40 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.26 Total: 7.76 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.83 Total: 4.01 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.34 Total: -47.22 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.17 Total: -19.59 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.16 Total: -2.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.45 -7.96 -37.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427903104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.329 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds